HEADER STRUCTURAL PROTEIN 26-JUN-26 43CQ TITLE STRUCTURE OF WILD TYPE CATALYTIC DOMAINS OF E. COLI THREONINE TITLE 2 DEAMINASE IN COMPLEX WITH PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE DEHYDRATASE BIOSYNTHETIC ILVA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THREONINE DEAMINASE; COMPND 5 EC: 4.3.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ILVA, B3772, JW3745; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THREONINE DEAMINASE, PLP, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KHODI REVDAT 1 29-JUL-26 43CQ 0 SPRSDE 29-JUL-26 43CQ 9JFI JRNL AUTH S.KHODI,A.YEKEEN,H.LIU,Q.CHEN JRNL TITL TETRAMERIZATION MEDIATED BY TRANS-INTERFACE COUPLING JRNL TITL 2 UNDERLIES ALLOSTERIC CONTROL IN ESCHERICHIA COLI JRNL TITL 3 BIOSYNTHETIC THREONINE DEAMINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6900 - 4.9600 1.00 2854 149 0.1887 0.2165 REMARK 3 2 4.9600 - 3.9400 1.00 2686 143 0.1801 0.2549 REMARK 3 3 3.9400 - 3.4400 0.99 2624 164 0.2389 0.2994 REMARK 3 4 3.4400 - 3.1200 1.00 2658 145 0.2515 0.3147 REMARK 3 5 3.1200 - 2.9000 1.00 2638 139 0.2953 0.3625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4938 REMARK 3 ANGLE : 0.515 6696 REMARK 3 CHIRALITY : 0.041 773 REMARK 3 PLANARITY : 0.004 876 REMARK 3 DIHEDRAL : 6.725 707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8730 5.9269 0.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.4198 REMARK 3 T33: 0.3503 T12: -0.0163 REMARK 3 T13: 0.0195 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.1198 L22: 2.8042 REMARK 3 L33: 2.2723 L12: -0.9780 REMARK 3 L13: -0.2833 L23: -0.7425 REMARK 3 S TENSOR REMARK 3 S11: 0.2327 S12: -0.3216 S13: -0.2358 REMARK 3 S21: -0.1939 S22: -0.1195 S23: 0.3435 REMARK 3 S31: 0.0462 S32: 0.0660 S33: 0.0114 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3601 3.8147 -19.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.5703 T22: 0.5167 REMARK 3 T33: 0.3291 T12: -0.0501 REMARK 3 T13: -0.0419 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.9591 L22: 2.1631 REMARK 3 L33: 2.5803 L12: 0.9551 REMARK 3 L13: -1.1451 L23: -0.1072 REMARK 3 S TENSOR REMARK 3 S11: -0.3546 S12: 0.8561 S13: -0.2033 REMARK 3 S21: -0.7641 S22: 0.2062 S23: 0.1478 REMARK 3 S31: 0.1416 S32: -0.3095 S33: 0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1141 0.0500 -23.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.6107 T22: 0.6366 REMARK 3 T33: 0.5552 T12: -0.1056 REMARK 3 T13: 0.1443 T23: -0.1289 REMARK 3 L TENSOR REMARK 3 L11: 1.7137 L22: 3.1563 REMARK 3 L33: 1.6004 L12: 0.2861 REMARK 3 L13: -0.4931 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.1949 S12: 0.7654 S13: -0.5258 REMARK 3 S21: -0.3973 S22: 0.2164 S23: -0.1182 REMARK 3 S31: 0.5135 S32: -0.3302 S33: 0.1348 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7936 10.2460 0.2179 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.4487 REMARK 3 T33: 0.4194 T12: 0.0332 REMARK 3 T13: -0.0446 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.9969 L22: 2.4945 REMARK 3 L33: 0.5101 L12: 0.1904 REMARK 3 L13: 0.5750 L23: -0.8956 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.2060 S13: -0.4710 REMARK 3 S21: 0.0974 S22: -0.1457 S23: 0.3151 REMARK 3 S31: 0.2353 S32: -0.0184 S33: 0.0680 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0586 4.8183 0.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.5472 REMARK 3 T33: 0.6431 T12: -0.0407 REMARK 3 T13: 0.0539 T23: 0.1420 REMARK 3 L TENSOR REMARK 3 L11: 3.3135 L22: 3.1223 REMARK 3 L33: 2.1868 L12: 0.9113 REMARK 3 L13: -0.3380 L23: -0.9467 REMARK 3 S TENSOR REMARK 3 S11: 0.2067 S12: -0.2696 S13: -0.5664 REMARK 3 S21: -0.3616 S22: -0.2133 S23: -1.0965 REMARK 3 S31: 0.4107 S32: 0.4450 S33: 0.2224 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6217 -2.5248 -14.8407 REMARK 3 T TENSOR REMARK 3 T11: 0.6945 T22: 0.6577 REMARK 3 T33: 0.7431 T12: -0.0543 REMARK 3 T13: 0.2378 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.6981 L22: 2.3774 REMARK 3 L33: 0.1999 L12: 0.5802 REMARK 3 L13: -0.2676 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.8566 S12: 0.6283 S13: -1.0677 REMARK 3 S21: -1.2610 S22: 0.8659 S23: -0.7046 REMARK 3 S31: 0.1622 S32: -0.2878 S33: 0.2666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3143 0.0547 0.6219 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.5162 REMARK 3 T33: 0.3858 T12: 0.0432 REMARK 3 T13: -0.0033 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.7923 L22: 3.3641 REMARK 3 L33: 1.6425 L12: 1.0655 REMARK 3 L13: -0.2345 L23: -0.4148 REMARK 3 S TENSOR REMARK 3 S11: 0.1244 S12: -0.4362 S13: -0.3020 REMARK 3 S21: -0.5561 S22: -0.4509 S23: -0.4298 REMARK 3 S31: 0.1885 S32: 0.4046 S33: 0.1924 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0335 -9.4333 4.1232 REMARK 3 T TENSOR REMARK 3 T11: 0.4493 T22: 0.5236 REMARK 3 T33: 0.5741 T12: 0.0051 REMARK 3 T13: 0.0959 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 2.1215 L22: 3.3698 REMARK 3 L33: 1.7855 L12: -0.9153 REMARK 3 L13: 0.4569 L23: -1.1909 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: 0.3034 S13: -0.1801 REMARK 3 S21: -0.0685 S22: 0.0470 S23: -0.3701 REMARK 3 S31: 0.1341 S32: 0.2974 S33: 0.1583 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2831 -18.1579 3.5115 REMARK 3 T TENSOR REMARK 3 T11: 0.4962 T22: 0.5016 REMARK 3 T33: 0.5479 T12: -0.0297 REMARK 3 T13: -0.0605 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.1712 L22: 3.5211 REMARK 3 L33: 2.4038 L12: -1.8210 REMARK 3 L13: -0.2875 L23: -0.9230 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: -0.0498 S13: -0.2460 REMARK 3 S21: -0.1333 S22: 0.1956 S23: 0.2190 REMARK 3 S31: 0.1258 S32: -0.2735 S33: -0.1260 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4238 -27.0286 18.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.5991 T22: 0.8313 REMARK 3 T33: 0.6940 T12: 0.1821 REMARK 3 T13: 0.0686 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 2.0755 L22: 3.0267 REMARK 3 L33: 2.7538 L12: 0.1069 REMARK 3 L13: 0.7730 L23: -0.5669 REMARK 3 S TENSOR REMARK 3 S11: -0.2608 S12: -0.2081 S13: -0.6405 REMARK 3 S21: 0.5438 S22: 0.8648 S23: 0.2522 REMARK 3 S31: 0.3480 S32: 0.4964 S33: -0.0178 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1551 -30.7491 -2.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.6896 T22: 0.5172 REMARK 3 T33: 0.8500 T12: -0.0106 REMARK 3 T13: -0.2255 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 2.4993 L22: 2.7955 REMARK 3 L33: 1.8589 L12: -0.1391 REMARK 3 L13: -1.3107 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.1683 S13: -0.6917 REMARK 3 S21: -0.0683 S22: -0.0495 S23: 0.7346 REMARK 3 S31: 0.2102 S32: -0.0505 S33: -0.1113 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6033 -24.5538 -8.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.6602 T22: 0.3802 REMARK 3 T33: 0.4374 T12: 0.0933 REMARK 3 T13: -0.0730 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.8553 L22: 3.5632 REMARK 3 L33: 2.4721 L12: 1.5018 REMARK 3 L13: -0.6412 L23: -0.7212 REMARK 3 S TENSOR REMARK 3 S11: 0.3632 S12: 0.2137 S13: -0.7577 REMARK 3 S21: -0.7966 S22: -0.2906 S23: -0.2071 REMARK 3 S31: 0.1195 S32: 0.2241 S33: 0.0326 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 43CQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 30-JUN-26. REMARK 100 THE DEPOSITION ID IS D_1300076144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14225 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2H4O2, 0.1 M HEPES SODIUM PH REMARK 280 7.5 AND 28% V/V PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.23650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.07950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.11825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.07950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.35475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.07950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.11825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.07950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.07950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.35475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 VAL B 235 REMARK 465 GLY B 236 REMARK 465 LEU B 237 REMARK 465 PHE B 238 REMARK 465 ALA B 239 REMARK 465 GLU B 240 REMARK 465 GLY B 241 REMARK 465 VAL B 242 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 ARG B 325 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 329 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 24 57.34 -90.53 REMARK 500 ALA A 28 -42.73 -133.36 REMARK 500 ASN A 134 -168.76 -115.07 REMARK 500 PHE A 157 -39.02 -152.06 REMARK 500 SER A 217 57.62 -108.06 REMARK 500 GLU A 335 -159.50 -108.44 REMARK 500 LEU A 336 -114.14 -90.16 REMARK 500 PRO B 24 50.03 -91.39 REMARK 500 ALA B 28 -48.80 -137.35 REMARK 500 THR B 111 35.78 -73.76 REMARK 500 ALA B 112 14.53 -156.00 REMARK 500 PHE B 157 -35.55 -151.29 REMARK 500 LEU B 203 -70.15 -106.15 REMARK 500 SER B 217 55.07 -110.66 REMARK 500 GLU B 332 -42.00 -177.81 REMARK 500 LEU B 336 41.87 -78.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 43CQ A 10 335 UNP P04968 ILVA_ECOLI 10 335 DBREF 43CQ B 10 335 UNP P04968 ILVA_ECOLI 10 335 SEQADV 43CQ THR A 161 UNP P04968 MET 161 CONFLICT SEQADV 43CQ VAL A 274 UNP P04968 MET 274 CONFLICT SEQADV 43CQ GLN A 302 UNP P04968 LEU 302 CONFLICT SEQADV 43CQ LEU A 336 UNP P04968 EXPRESSION TAG SEQADV 43CQ GLU A 337 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 338 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 339 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 340 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 341 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 342 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS A 343 UNP P04968 EXPRESSION TAG SEQADV 43CQ THR B 161 UNP P04968 MET 161 CONFLICT SEQADV 43CQ VAL B 274 UNP P04968 MET 274 CONFLICT SEQADV 43CQ GLN B 302 UNP P04968 LEU 302 CONFLICT SEQADV 43CQ LEU B 336 UNP P04968 EXPRESSION TAG SEQADV 43CQ GLU B 337 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 338 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 339 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 340 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 341 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 342 UNP P04968 EXPRESSION TAG SEQADV 43CQ HIS B 343 UNP P04968 EXPRESSION TAG SEQRES 1 A 334 ALA PRO GLU GLY ALA GLU TYR LEU ARG ALA VAL LEU ARG SEQRES 2 A 334 ALA PRO VAL TYR GLU ALA ALA GLN VAL THR PRO LEU GLN SEQRES 3 A 334 LYS MET GLU LYS LEU SER SER ARG LEU ASP ASN VAL ILE SEQRES 4 A 334 LEU VAL LYS ARG GLU ASP ARG GLN PRO VAL HIS SER PHE SEQRES 5 A 334 LLP LEU ARG GLY ALA TYR ALA MET MET ALA GLY LEU THR SEQRES 6 A 334 GLU GLU GLN LYS ALA HIS GLY VAL ILE THR ALA SER ALA SEQRES 7 A 334 GLY ASN HIS ALA GLN GLY VAL ALA PHE SER SER ALA ARG SEQRES 8 A 334 LEU GLY VAL LYS ALA LEU ILE VAL MET PRO THR ALA THR SEQRES 9 A 334 ALA ASP ILE LYS VAL ASP ALA VAL ARG GLY PHE GLY GLY SEQRES 10 A 334 GLU VAL LEU LEU HIS GLY ALA ASN PHE ASP GLU ALA LYS SEQRES 11 A 334 ALA LYS ALA ILE GLU LEU SER GLN GLN GLN GLY PHE THR SEQRES 12 A 334 TRP VAL PRO PRO PHE ASP HIS PRO THR VAL ILE ALA GLY SEQRES 13 A 334 GLN GLY THR LEU ALA LEU GLU LEU LEU GLN GLN ASP ALA SEQRES 14 A 334 HIS LEU ASP ARG VAL PHE VAL PRO VAL GLY GLY GLY GLY SEQRES 15 A 334 LEU ALA ALA GLY VAL ALA VAL LEU ILE LYS GLN LEU MET SEQRES 16 A 334 PRO GLN ILE LYS VAL ILE ALA VAL GLU ALA GLU ASP SER SEQRES 17 A 334 ALA CYS LEU LYS ALA ALA LEU ASP ALA GLY HIS PRO VAL SEQRES 18 A 334 ASP LEU PRO ARG VAL GLY LEU PHE ALA GLU GLY VAL ALA SEQRES 19 A 334 VAL LYS ARG ILE GLY ASP GLU THR PHE ARG LEU CYS GLN SEQRES 20 A 334 GLU TYR LEU ASP ASP ILE ILE THR VAL ASP SER ASP ALA SEQRES 21 A 334 ILE CYS ALA ALA VAL LYS ASP LEU PHE GLU ASP VAL ARG SEQRES 22 A 334 ALA VAL ALA GLU PRO SER GLY ALA LEU ALA LEU ALA GLY SEQRES 23 A 334 MET LYS LYS TYR ILE ALA GLN HIS ASN ILE ARG GLY GLU SEQRES 24 A 334 ARG LEU ALA HIS ILE LEU SER GLY ALA ASN VAL ASN PHE SEQRES 25 A 334 HIS GLY LEU ARG TYR VAL SER GLU ARG CYS GLU LEU GLY SEQRES 26 A 334 GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 334 ALA PRO GLU GLY ALA GLU TYR LEU ARG ALA VAL LEU ARG SEQRES 2 B 334 ALA PRO VAL TYR GLU ALA ALA GLN VAL THR PRO LEU GLN SEQRES 3 B 334 LYS MET GLU LYS LEU SER SER ARG LEU ASP ASN VAL ILE SEQRES 4 B 334 LEU VAL LYS ARG GLU ASP ARG GLN PRO VAL HIS SER PHE SEQRES 5 B 334 LLP LEU ARG GLY ALA TYR ALA MET MET ALA GLY LEU THR SEQRES 6 B 334 GLU GLU GLN LYS ALA HIS GLY VAL ILE THR ALA SER ALA SEQRES 7 B 334 GLY ASN HIS ALA GLN GLY VAL ALA PHE SER SER ALA ARG SEQRES 8 B 334 LEU GLY VAL LYS ALA LEU ILE VAL MET PRO THR ALA THR SEQRES 9 B 334 ALA ASP ILE LYS VAL ASP ALA VAL ARG GLY PHE GLY GLY SEQRES 10 B 334 GLU VAL LEU LEU HIS GLY ALA ASN PHE ASP GLU ALA LYS SEQRES 11 B 334 ALA LYS ALA ILE GLU LEU SER GLN GLN GLN GLY PHE THR SEQRES 12 B 334 TRP VAL PRO PRO PHE ASP HIS PRO THR VAL ILE ALA GLY SEQRES 13 B 334 GLN GLY THR LEU ALA LEU GLU LEU LEU GLN GLN ASP ALA SEQRES 14 B 334 HIS LEU ASP ARG VAL PHE VAL PRO VAL GLY GLY GLY GLY SEQRES 15 B 334 LEU ALA ALA GLY VAL ALA VAL LEU ILE LYS GLN LEU MET SEQRES 16 B 334 PRO GLN ILE LYS VAL ILE ALA VAL GLU ALA GLU ASP SER SEQRES 17 B 334 ALA CYS LEU LYS ALA ALA LEU ASP ALA GLY HIS PRO VAL SEQRES 18 B 334 ASP LEU PRO ARG VAL GLY LEU PHE ALA GLU GLY VAL ALA SEQRES 19 B 334 VAL LYS ARG ILE GLY ASP GLU THR PHE ARG LEU CYS GLN SEQRES 20 B 334 GLU TYR LEU ASP ASP ILE ILE THR VAL ASP SER ASP ALA SEQRES 21 B 334 ILE CYS ALA ALA VAL LYS ASP LEU PHE GLU ASP VAL ARG SEQRES 22 B 334 ALA VAL ALA GLU PRO SER GLY ALA LEU ALA LEU ALA GLY SEQRES 23 B 334 MET LYS LYS TYR ILE ALA GLN HIS ASN ILE ARG GLY GLU SEQRES 24 B 334 ARG LEU ALA HIS ILE LEU SER GLY ALA ASN VAL ASN PHE SEQRES 25 B 334 HIS GLY LEU ARG TYR VAL SER GLU ARG CYS GLU LEU GLY SEQRES 26 B 334 GLU LEU GLU HIS HIS HIS HIS HIS HIS MODRES 43CQ LLP A 62 LYS MODIFIED RESIDUE MODRES 43CQ LLP B 62 LYS MODIFIED RESIDUE HET LLP A 62 24 HET LLP B 62 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 GLU A 12 ALA A 23 1 12 HELIX 2 AA2 PRO A 24 ALA A 28 5 5 HELIX 3 AA3 MET A 37 ASP A 45 1 9 HELIX 4 AA4 ASP A 54 GLN A 56 5 3 HELIX 5 AA5 PHE A 61 GLY A 72 1 12 HELIX 6 AA6 THR A 74 HIS A 80 1 7 HELIX 7 AA7 GLY A 88 GLY A 102 1 15 HELIX 8 AA8 ALA A 114 PHE A 124 1 11 HELIX 9 AA9 ASN A 134 GLY A 150 1 17 HELIX 10 AB1 HIS A 159 ASP A 177 1 19 HELIX 11 AB2 GLY A 190 MET A 204 1 15 HELIX 12 AB3 ALA A 218 GLY A 227 1 10 HELIX 13 AB4 LEU A 237 GLY A 241 5 5 HELIX 14 AB5 GLY A 248 LEU A 259 1 12 HELIX 15 AB6 ASP A 266 ARG A 282 1 17 HELIX 16 AB7 ALA A 290 ASN A 304 1 15 HELIX 17 AB8 HIS A 322 GLU A 332 1 11 HELIX 18 AB9 GLY B 13 ARG B 22 1 10 HELIX 19 AC1 PRO B 24 ALA B 28 5 5 HELIX 20 AC2 MET B 37 ASP B 45 1 9 HELIX 21 AC3 GLU B 53 GLN B 56 5 4 HELIX 22 AC4 PHE B 61 GLY B 72 1 12 HELIX 23 AC5 THR B 74 GLY B 81 1 8 HELIX 24 AC6 GLY B 88 LEU B 101 1 14 HELIX 25 AC7 ALA B 114 PHE B 124 1 11 HELIX 26 AC8 ASN B 134 GLY B 150 1 17 HELIX 27 AC9 HIS B 159 ASP B 177 1 19 HELIX 28 AD1 GLY B 190 MET B 204 1 15 HELIX 29 AD2 ALA B 218 GLY B 227 1 10 HELIX 30 AD3 GLY B 248 LEU B 259 1 12 HELIX 31 AD4 ASP B 266 ARG B 282 1 17 HELIX 32 AD5 ALA B 290 ASN B 304 1 15 HELIX 33 AD6 PHE B 321 GLY B 323 5 3 HELIX 34 AD7 LEU B 324 GLY B 334 1 11 SHEET 1 AA1 6 LEU A 34 LYS A 36 0 SHEET 2 AA1 6 VAL A 47 ARG A 52 -1 O VAL A 50 N GLN A 35 SHEET 3 AA1 6 ARG A 309 LEU A 314 1 O LEU A 310 N LEU A 49 SHEET 4 AA1 6 ARG A 182 PRO A 186 1 N PHE A 184 O ALA A 311 SHEET 5 AA1 6 LYS A 208 ALA A 214 1 O ILE A 210 N VAL A 183 SHEET 6 AA1 6 ASP A 261 VAL A 265 1 O ASP A 261 N ALA A 211 SHEET 1 AA2 4 GLU A 127 LEU A 130 0 SHEET 2 AA2 4 ALA A 105 MET A 109 1 N ILE A 107 O GLU A 127 SHEET 3 AA2 4 VAL A 82 ALA A 85 1 N THR A 84 O VAL A 108 SHEET 4 AA2 4 THR A 152 TRP A 153 1 O THR A 152 N ILE A 83 SHEET 1 AA3 6 LEU B 34 LYS B 36 0 SHEET 2 AA3 6 VAL B 47 LYS B 51 -1 O VAL B 50 N GLN B 35 SHEET 3 AA3 6 ARG B 309 ILE B 313 1 O HIS B 312 N LYS B 51 SHEET 4 AA3 6 ARG B 182 PRO B 186 1 N PHE B 184 O ALA B 311 SHEET 5 AA3 6 LYS B 208 ALA B 214 1 O ILE B 210 N VAL B 183 SHEET 6 AA3 6 ASP B 261 VAL B 265 1 O ILE B 263 N ALA B 211 SHEET 1 AA4 4 GLU B 127 LEU B 130 0 SHEET 2 AA4 4 ALA B 105 MET B 109 1 N ILE B 107 O GLU B 127 SHEET 3 AA4 4 VAL B 82 ALA B 85 1 N THR B 84 O VAL B 108 SHEET 4 AA4 4 THR B 152 TRP B 153 1 O THR B 152 N ILE B 83 LINK C PHE A 61 N LLP A 62 1555 1555 1.32 LINK C LLP A 62 N LEU A 63 1555 1555 1.33 LINK C PHE B 61 N LLP B 62 1555 1555 1.33 LINK C LLP B 62 N LEU B 63 1555 1555 1.33 CRYST1 102.159 102.159 116.473 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008586 0.00000 CONECT 408 432 CONECT 417 418 425 CONECT 418 417 419 420 CONECT 419 418 CONECT 420 418 421 422 CONECT 421 420 CONECT 422 420 423 424 CONECT 423 422 438 CONECT 424 422 425 426 CONECT 425 417 424 CONECT 426 424 427 CONECT 427 426 428 CONECT 428 427 429 430 431 CONECT 429 428 CONECT 430 428 CONECT 431 428 CONECT 432 408 433 CONECT 433 432 434 439 CONECT 434 433 435 CONECT 435 434 436 CONECT 436 435 437 CONECT 437 436 438 CONECT 438 423 437 CONECT 439 433 440 441 CONECT 440 439 CONECT 441 439 CONECT 2861 2885 CONECT 2870 2871 2878 CONECT 2871 2870 2872 2873 CONECT 2872 2871 CONECT 2873 2871 2874 2875 CONECT 2874 2873 CONECT 2875 2873 2876 2877 CONECT 2876 2875 2891 CONECT 2877 2875 2878 2879 CONECT 2878 2870 2877 CONECT 2879 2877 2880 CONECT 2880 2879 2881 CONECT 2881 2880 2882 2883 2884 CONECT 2882 2881 CONECT 2883 2881 CONECT 2884 2881 CONECT 2885 2861 2886 CONECT 2886 2885 2887 2892 CONECT 2887 2886 2888 CONECT 2888 2887 2889 CONECT 2889 2888 2890 CONECT 2890 2889 2891 CONECT 2891 2876 2890 CONECT 2892 2886 2893 2894 CONECT 2893 2892 CONECT 2894 2892 MASTER 476 0 2 34 20 0 0 6 4853 2 52 52 END