HEADER OXIDOREDUCTASE 02-JUL-26 43IC TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H) AND ZN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 43IC 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 100153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2700 - 4.4700 0.99 3441 177 0.1675 0.1926 REMARK 3 2 4.4700 - 3.5500 1.00 3305 188 0.1343 0.1545 REMARK 3 3 3.5500 - 3.1000 1.00 3273 183 0.1627 0.1871 REMARK 3 4 3.1000 - 2.8200 1.00 3229 182 0.1751 0.2032 REMARK 3 5 2.8200 - 2.6200 1.00 3262 145 0.1766 0.1734 REMARK 3 6 2.6200 - 2.4600 1.00 3256 144 0.1648 0.1914 REMARK 3 7 2.4600 - 2.3400 0.99 3225 149 0.1517 0.1735 REMARK 3 8 2.3400 - 2.2400 1.00 3251 139 0.1544 0.1761 REMARK 3 9 2.2400 - 2.1500 0.99 3166 187 0.1457 0.1738 REMARK 3 10 2.1500 - 2.0800 0.99 3166 181 0.1552 0.1892 REMARK 3 11 2.0800 - 2.0100 0.99 3197 162 0.1600 0.1763 REMARK 3 12 2.0100 - 1.9500 0.99 3168 170 0.1502 0.1647 REMARK 3 13 1.9500 - 1.9000 0.99 3168 192 0.1493 0.1814 REMARK 3 14 1.9000 - 1.8600 0.99 3114 185 0.1503 0.1801 REMARK 3 15 1.8600 - 1.8100 0.99 3133 180 0.1517 0.1596 REMARK 3 16 1.8100 - 1.7800 0.99 3145 170 0.1617 0.1966 REMARK 3 17 1.7800 - 1.7400 0.99 3187 137 0.1680 0.1857 REMARK 3 18 1.7400 - 1.7100 0.99 3163 140 0.1787 0.1932 REMARK 3 19 1.7100 - 1.6800 0.98 3146 165 0.1841 0.2244 REMARK 3 20 1.6800 - 1.6500 0.98 3078 179 0.1971 0.2542 REMARK 3 21 1.6500 - 1.6200 0.98 3192 140 0.1814 0.2107 REMARK 3 22 1.6200 - 1.6000 0.98 3105 159 0.1924 0.2335 REMARK 3 23 1.6000 - 1.5700 0.98 3100 185 0.1913 0.1902 REMARK 3 24 1.5700 - 1.5500 0.98 3124 176 0.1954 0.2297 REMARK 3 25 1.5500 - 1.5300 0.98 3084 166 0.2006 0.2174 REMARK 3 26 1.5300 - 1.5100 0.98 3125 148 0.2008 0.2098 REMARK 3 27 1.5100 - 1.4900 0.97 3143 137 0.2165 0.2408 REMARK 3 28 1.4900 - 1.4700 0.97 3119 140 0.2298 0.2568 REMARK 3 29 1.4700 - 1.4600 0.98 3099 154 0.2384 0.2789 REMARK 3 30 1.4600 - 1.4400 0.97 3082 147 0.2538 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.129 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4342 REMARK 3 ANGLE : 1.047 5920 REMARK 3 CHIRALITY : 0.080 673 REMARK 3 PLANARITY : 0.009 767 REMARK 3 DIHEDRAL : 11.967 1571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8503 -2.9091 -15.5961 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0888 REMARK 3 T33: 0.1066 T12: 0.0026 REMARK 3 T13: 0.0015 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1639 L22: 0.1875 REMARK 3 L33: 0.7464 L12: 0.0549 REMARK 3 L13: 0.1364 L23: 0.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0045 S13: -0.0115 REMARK 3 S21: -0.0086 S22: 0.0105 S23: 0.0061 REMARK 3 S31: -0.0009 S32: -0.0223 S33: -0.0180 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7175 -0.2234 15.7265 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0896 REMARK 3 T33: 0.1027 T12: -0.0029 REMARK 3 T13: 0.0008 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2840 L22: 0.2604 REMARK 3 L33: 0.8130 L12: -0.1328 REMARK 3 L13: 0.2046 L23: -0.1123 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0324 S13: 0.0080 REMARK 3 S21: 0.0182 S22: 0.0055 S23: -0.0206 REMARK 3 S31: -0.0292 S32: 0.0218 S33: 0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 21 or REMARK 3 resid 23 through 39 or resid 41 through REMARK 3 124 or (resid 125 through 126 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 127 through 176 or (resid 177 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 178 or resid 180 REMARK 3 through 198 or resid 200 through 222 or REMARK 3 resid 224 through 252 or resid 254 REMARK 3 through 262 or resid 264 through 275 or REMARK 3 resid 301)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 21 or REMARK 3 resid 23 through 39 or resid 41 through REMARK 3 125 or (resid 126 and (name N or name CA REMARK 3 or name C or name O or name CB )) or REMARK 3 resid 127 through 151 or (resid 152 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 153 through 155 or REMARK 3 (resid 156 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 157 REMARK 3 through 178 or resid 180 through 198 or REMARK 3 resid 200 through 222 or resid 224 REMARK 3 through 246 or (resid 247 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 248 through 251 or (resid 252 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 254 through 255 REMARK 3 or (resid 256 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 257 through 262 or resid 264 through 275 REMARK 3 or resid 301)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 43IC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1300076463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 46.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 27.10 REMARK 200 R MERGE (I) : 0.25800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.19100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE 0.1 M BIS-TRIS REMARK 280 PH 6.5 25% W/V POLYETHYLENE GLYCOL 3,350, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.44250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.10900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.10900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.44250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 MET A 126 CG SD CE REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 MET A 252 CG SD CE REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 591 O HOH B 626 1.97 REMARK 500 O HOH B 564 O HOH B 591 2.01 REMARK 500 O1 PEG A 302 O HOH A 401 2.04 REMARK 500 OD2 ASP A 92 O HOH A 402 2.13 REMARK 500 O HOH A 493 O HOH A 519 2.17 REMARK 500 O LYS A 22 O HOH A 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 618 O HOH B 669 2554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 79.77 -100.94 REMARK 500 HIS A 116 155.10 71.82 REMARK 500 ALA A 137 -30.18 -147.57 REMARK 500 MET A 169 -104.20 -99.02 REMARK 500 VAL A 190 -69.55 -96.47 REMARK 500 HIS B 116 155.16 71.82 REMARK 500 ALA B 137 -29.72 -146.14 REMARK 500 MET B 169 -104.57 -97.28 REMARK 500 VAL B 190 -69.53 -96.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 699 DISTANCE = 6.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 111.1 REMARK 620 3 HOH A 554 O 102.9 129.5 REMARK 620 4 HIS B 222 NE2 117.8 94.9 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS B 113 NE2 117.8 REMARK 620 3 GLU B 183 OE1 95.5 111.9 REMARK 620 4 HOH B 555 O 99.9 102.9 129.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26JC RELATED DB: PDB DBREF1 43IC A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 43IC A A0ABY1INU2 2 275 DBREF1 43IC B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 43IC B A0ABY1INU2 2 275 SEQADV 43IC MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 43IC ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 43IC ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 43IC SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET PEG A 302 7 HET ZN A 303 1 HET NAD B 301 44 HET ZN B 302 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 PEG C4 H10 O3 FORMUL 5 ZN 2(ZN 2+) FORMUL 8 HOH *595(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 LEU A 70 GLU A 79 1 10 HELIX 5 AA5 LYS A 80 LEU A 82 5 3 HELIX 6 AA6 ALA A 93 ALA A 98 1 6 HELIX 7 AA7 GLU A 125 ARG A 130 1 6 HELIX 8 AA8 ASP A 151 TRP A 165 1 15 HELIX 9 AA9 THR A 175 GLU A 183 1 9 HELIX 10 AB1 VAL A 190 ARG A 208 1 19 HELIX 11 AB2 PRO A 211 PHE A 231 1 21 HELIX 12 AB3 SER A 239 MET A 254 1 16 HELIX 13 AB4 ASP A 257 PHE A 262 5 6 HELIX 14 AB5 GLU A 263 THR A 275 1 13 HELIX 15 AB6 GLY B 11 LYS B 22 1 12 HELIX 16 AB7 SER B 34 GLY B 46 1 13 HELIX 17 AB8 PRO B 51 ASP B 57 1 7 HELIX 18 AB9 PRO B 67 THR B 69 5 3 HELIX 19 AC1 LEU B 70 GLU B 79 1 10 HELIX 20 AC2 LYS B 80 LEU B 82 5 3 HELIX 21 AC3 ALA B 93 ALA B 98 1 6 HELIX 22 AC4 GLU B 125 ARG B 130 1 6 HELIX 23 AC5 PRO B 150 GLU B 152 5 3 HELIX 24 AC6 HIS B 153 TRP B 165 1 13 HELIX 25 AC7 THR B 175 GLU B 183 1 9 HELIX 26 AC8 VAL B 190 ARG B 208 1 19 HELIX 27 AC9 PRO B 211 PHE B 231 1 21 HELIX 28 AD1 SER B 239 MET B 254 1 16 HELIX 29 AD2 ASP B 257 PHE B 262 5 6 HELIX 30 AD3 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N PHE A 7 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N LEU B 6 O VAL B 31 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O ALA B 145 N VAL B 111 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK NE2 HIS A 113 ZN ZN A 303 1555 1555 2.11 LINK OE1 GLU A 183 ZN ZN A 303 1555 1555 1.97 LINK NE2 HIS A 222 ZN ZN B 302 1555 1555 2.10 LINK ZN ZN A 303 O HOH A 554 1555 1555 1.92 LINK ZN ZN A 303 NE2 HIS B 222 1555 1555 2.13 LINK NE2 HIS B 113 ZN ZN B 302 1555 1555 2.11 LINK OE1 GLU B 183 ZN ZN B 302 1555 1555 1.97 LINK ZN ZN B 302 O HOH B 555 1555 1555 1.97 CISPEP 1 ALA A 166 PRO A 167 0 0.84 CISPEP 2 GLU A 183 PRO A 184 0 13.39 CISPEP 3 ALA B 166 PRO B 167 0 1.29 CISPEP 4 GLU B 183 PRO B 184 0 13.26 CRYST1 70.885 75.374 104.218 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009595 0.00000 MTRIX1 1 -0.996642 -0.081613 -0.006631 70.13807 1 MTRIX2 1 -0.079912 0.987125 -0.138559 2.79171 1 MTRIX3 1 0.017854 -0.137564 -0.990332 -0.59190 1 CONECT 799 4197 CONECT 1343 4197 CONECT 1635 4242 CONECT 2870 4242 CONECT 3416 4242 CONECT 3702 4197 CONECT 4146 4147 4148 4149 4168 CONECT 4147 4146 CONECT 4148 4146 CONECT 4149 4146 4150 CONECT 4150 4149 4151 CONECT 4151 4150 4152 4153 CONECT 4152 4151 4157 CONECT 4153 4151 4154 4155 CONECT 4154 4153 CONECT 4155 4153 4156 4157 CONECT 4156 4155 CONECT 4157 4152 4155 4158 CONECT 4158 4157 4159 4167 CONECT 4159 4158 4160 CONECT 4160 4159 4161 CONECT 4161 4160 4162 4167 CONECT 4162 4161 4163 4164 CONECT 4163 4162 CONECT 4164 4162 4165 CONECT 4165 4164 4166 CONECT 4166 4165 4167 CONECT 4167 4158 4161 4166 CONECT 4168 4146 4169 CONECT 4169 4168 4170 4171 4172 CONECT 4170 4169 CONECT 4171 4169 CONECT 4172 4169 4173 CONECT 4173 4172 4174 CONECT 4174 4173 4175 4176 CONECT 4175 4174 4180 CONECT 4176 4174 4177 4178 CONECT 4177 4176 CONECT 4178 4176 4179 4180 CONECT 4179 4178 CONECT 4180 4175 4178 4181 CONECT 4181 4180 4182 4189 CONECT 4182 4181 4183 CONECT 4183 4182 4184 4187 CONECT 4184 4183 4185 4186 CONECT 4185 4184 CONECT 4186 4184 CONECT 4187 4183 4188 CONECT 4188 4187 4189 CONECT 4189 4181 4188 CONECT 4190 4191 4192 CONECT 4191 4190 CONECT 4192 4190 4193 CONECT 4193 4192 4194 CONECT 4194 4193 4195 CONECT 4195 4194 4196 CONECT 4196 4195 CONECT 4197 799 1343 3702 4396 CONECT 4198 4199 4200 4201 4220 CONECT 4199 4198 CONECT 4200 4198 CONECT 4201 4198 4202 CONECT 4202 4201 4203 CONECT 4203 4202 4204 4205 CONECT 4204 4203 4209 CONECT 4205 4203 4206 4207 CONECT 4206 4205 CONECT 4207 4205 4208 4209 CONECT 4208 4207 CONECT 4209 4204 4207 4210 CONECT 4210 4209 4211 4219 CONECT 4211 4210 4212 CONECT 4212 4211 4213 CONECT 4213 4212 4214 4219 CONECT 4214 4213 4215 4216 CONECT 4215 4214 CONECT 4216 4214 4217 CONECT 4217 4216 4218 CONECT 4218 4217 4219 CONECT 4219 4210 4213 4218 CONECT 4220 4198 4221 CONECT 4221 4220 4222 4223 4224 CONECT 4222 4221 CONECT 4223 4221 CONECT 4224 4221 4225 CONECT 4225 4224 4226 CONECT 4226 4225 4227 4228 CONECT 4227 4226 4232 CONECT 4228 4226 4229 4230 CONECT 4229 4228 CONECT 4230 4228 4231 4232 CONECT 4231 4230 CONECT 4232 4227 4230 4233 CONECT 4233 4232 4234 4241 CONECT 4234 4233 4235 CONECT 4235 4234 4236 4239 CONECT 4236 4235 4237 4238 CONECT 4237 4236 CONECT 4238 4236 CONECT 4239 4235 4240 CONECT 4240 4239 4241 CONECT 4241 4233 4240 CONECT 4242 1635 2870 3416 4696 CONECT 4396 4197 CONECT 4696 4242 MASTER 445 0 5 30 14 0 0 9 4778 2 105 44 END