HEADER OXIDOREDUCTASE 24-JUL-26 44CF TITLE CRYSTAL STRUCTURE OF D-APIONATE OXIDOISOMERASE FROM AUREIMONAS TITLE 2 ALTAMIRENSIS IN COMPLEX WITH NAD+(H), ZN2+, MN2+, AND MALONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE COENZYME F420-DEPENDENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUREIMONAS ALTAMIRENSIS; SOURCE 3 ORGANISM_TAXID: 370622; SOURCE 4 GENE: SAMN02745911_3050; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS D-APIOSE METABOLISM; D-APIONATE; OXIDOISOMERASE; METAL ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WATANABE,Y.AONO REVDAT 1 11-NOV-26 44CF 0 JRNL AUTH S.WATANABE,Y.AONO,S.I.TERAWAKI,H.SATO,T.YOKOI JRNL TITL STRUCTURAL BASIS FOR OXIDATION-COUPLED ISOMERIZATION BY JRNL TITL 2 APNO. JRNL REF J.BIOL.CHEM. 13628 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42849729 JRNL DOI 10.1016/J.JBC.2026.113628 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5200 - 4.9400 1.00 2642 123 0.1723 0.1695 REMARK 3 2 4.9400 - 3.9200 1.00 2511 147 0.1322 0.1498 REMARK 3 3 3.9200 - 3.4300 1.00 2474 124 0.1463 0.1546 REMARK 3 4 3.4300 - 3.1100 1.00 2449 151 0.1660 0.2241 REMARK 3 5 3.1100 - 2.8900 1.00 2448 131 0.1818 0.2211 REMARK 3 6 2.8900 - 2.7200 1.00 2434 162 0.1905 0.2196 REMARK 3 7 2.7200 - 2.5800 1.00 2448 118 0.1849 0.2468 REMARK 3 8 2.5800 - 2.4700 1.00 2435 120 0.1792 0.2335 REMARK 3 9 2.4700 - 2.3800 1.00 2399 149 0.1714 0.2137 REMARK 3 10 2.3800 - 2.2900 1.00 2415 145 0.1751 0.2076 REMARK 3 11 2.2900 - 2.2200 1.00 2414 129 0.1685 0.2331 REMARK 3 12 2.2200 - 2.1600 1.00 2416 139 0.1725 0.2197 REMARK 3 13 2.1600 - 2.1000 1.00 2438 111 0.1608 0.2010 REMARK 3 14 2.1000 - 2.0500 0.99 2371 149 0.1752 0.2291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.181 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4304 REMARK 3 ANGLE : 0.529 5867 REMARK 3 CHIRALITY : 0.040 668 REMARK 3 PLANARITY : 0.005 763 REMARK 3 DIHEDRAL : 12.247 1539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3464 -0.3180 15.6369 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0291 REMARK 3 T33: 0.0526 T12: 0.0021 REMARK 3 T13: 0.0065 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.4199 L22: 0.2618 REMARK 3 L33: 0.7987 L12: -0.0909 REMARK 3 L13: 0.3430 L23: -0.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0231 S13: 0.0229 REMARK 3 S21: 0.0243 S22: 0.0009 S23: -0.0184 REMARK 3 S31: -0.0187 S32: 0.0378 S33: 0.0018 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 275) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3770 -2.5493 -15.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0175 REMARK 3 T33: 0.0542 T12: -0.0006 REMARK 3 T13: 0.0041 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3123 L22: 0.2622 REMARK 3 L33: 0.6396 L12: 0.0228 REMARK 3 L13: 0.2058 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0111 S13: -0.0135 REMARK 3 S21: -0.0172 S22: -0.0025 S23: 0.0261 REMARK 3 S31: 0.0061 S32: -0.0445 S33: -0.0166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 34 or REMARK 3 (resid 35 through 36 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 37 through 59 or (resid 60 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 61 through 75 or REMARK 3 resid 77 through 125 or (resid 126 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 127 through 198 or REMARK 3 resid 200 through 211 or (resid 212 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 213 through 222 or REMARK 3 resid 224 through 251 or resid 253 REMARK 3 through 275 or resid 301 through 302)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 38 or REMARK 3 (resid 39 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 40 REMARK 3 through 75 or resid 77 through 198 or REMARK 3 resid 200 through 222 or resid 224 REMARK 3 through 251 or resid 253 through 275 or REMARK 3 resid 301 through 302)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 44CF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1300077370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.889970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.30 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 19.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH7.0 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.74250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.26150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.26150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.74250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -206.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 MET B 126 CG SD CE REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 548 O HOH B 628 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 116 151.70 73.15 REMARK 500 ALA A 137 -31.46 -151.48 REMARK 500 MET A 169 -102.90 -100.71 REMARK 500 VAL A 190 -71.54 -98.10 REMARK 500 HIS B 116 152.08 73.20 REMARK 500 ALA B 137 -31.79 -151.31 REMARK 500 MET B 169 -103.04 -101.08 REMARK 500 VAL B 190 -71.37 -97.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 703 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 GLU A 183 OE1 106.0 REMARK 620 3 MLA A 302 O3A 118.3 134.3 REMARK 620 4 MLA A 302 O3B 98.7 112.3 52.6 REMARK 620 5 HIS B 222 NE2 105.4 92.9 86.2 138.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE2 REMARK 620 2 GLU A 188 OE2 93.2 REMARK 620 3 MLA A 302 O1B 156.2 96.4 REMARK 620 4 MLA A 302 O3B 83.8 104.7 72.7 REMARK 620 5 HOH A 417 O 72.6 156.6 104.0 92.4 REMARK 620 6 HOH A 515 O 101.8 76.3 101.6 174.2 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS B 113 NE2 104.3 REMARK 620 3 GLU B 183 OE1 94.1 101.2 REMARK 620 4 MLA B 302 O1A 147.0 98.0 105.2 REMARK 620 5 MLA B 302 O1B 96.9 109.2 143.8 52.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 183 OE2 REMARK 620 2 GLU B 188 OE2 94.3 REMARK 620 3 MLA B 302 O1A 82.5 106.4 REMARK 620 4 MLA B 302 O3B 155.8 96.1 73.7 REMARK 620 5 HOH B 404 O 69.5 153.3 92.8 107.2 REMARK 620 6 HOH B 525 O 100.4 78.2 174.6 103.1 83.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26JC RELATED DB: PDB DBREF1 44CF A 2 275 UNP A0ABY1INU2_9HYPH DBREF2 44CF A A0ABY1INU2 2 275 DBREF1 44CF B 2 275 UNP A0ABY1INU2_9HYPH DBREF2 44CF B A0ABY1INU2 2 275 SEQADV 44CF MET A -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 44CF ARG A -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF GLY A -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF SER A -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS A -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF GLY A 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF SER A 1 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF MET B -10 UNP A0ABY1INU INITIATING METHIONINE SEQADV 44CF ARG B -9 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF GLY B -8 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF SER B -7 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -6 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -5 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -4 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -3 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -2 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF HIS B -1 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF GLY B 0 UNP A0ABY1INU EXPRESSION TAG SEQADV 44CF SER B 1 UNP A0ABY1INU EXPRESSION TAG SEQRES 1 A 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 A 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 A 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 A 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 A 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 A 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 A 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 A 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 A 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 A 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 A 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 A 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 A 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 A 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 A 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 A 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 A 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 A 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 A 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 A 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 A 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 A 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR SEQRES 1 B 286 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR SEQRES 2 B 286 SER ILE ALA LEU PHE GLY ALA GLY GLY LYS MET GLY TYR SEQRES 3 B 286 ARG LEU ALA SER ASN LEU LYS GLY SER ARG PHE ASP VAL SEQRES 4 B 286 ARG HIS VAL GLU PRO SER GLU ALA GLY ALA LYS ARG LEU SEQRES 5 B 286 LYS ASP GLY LEU GLY PHE ASP CYS VAL PRO ALA GLU ALA SEQRES 6 B 286 ALA LEU ASP GLY ALA GLU VAL VAL VAL LEU ALA VAL PRO SEQRES 7 B 286 ASP THR LEU ILE GLY LYS VAL ALA ASN GLY ILE GLU LYS SEQRES 8 B 286 SER LEU LYS PRO GLY THR ILE VAL VAL VAL LEU ASP ALA SEQRES 9 B 286 ALA ALA PRO PHE ALA GLY HIS LEU PRO ASN ARG PRO ASP SEQRES 10 B 286 LEU THR TYR PHE VAL THR HIS PRO CYS HIS PRO PRO ILE SEQRES 11 B 286 PHE ASN ASP GLU THR GLU MET ASP ALA LYS ARG ASP PHE SEQRES 12 B 286 PHE GLY GLY ILE ALA ALA LYS GLN HIS ILE THR SER ALA SEQRES 13 B 286 LEU MET GLN GLY PRO ASP GLU HIS TYR ALA LEU GLY GLU SEQRES 14 B 286 GLU VAL ALA LYS VAL ILE TRP ALA PRO VAL MET ARG SER SEQRES 15 B 286 HIS ARG VAL THR VAL GLU GLN MET ALA LEU LEU GLU PRO SEQRES 16 B 286 GLY LEU SER GLU THR VAL CYS ALA SER LEU LEU VAL ALA SEQRES 17 B 286 MET LYS GLU ALA MET ASP GLU VAL VAL ALA ARG GLY VAL SEQRES 18 B 286 PRO LYS GLU ALA ALA ARG ASP PHE LEU LEU GLY HIS MET SEQRES 19 B 286 ASN VAL LEU GLY SER VAL ILE PHE GLU GLU THR PRO GLY SEQRES 20 B 286 VAL PHE SER ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY SEQRES 21 B 286 LYS PRO MET LEU MET ARG ASP ASP TRP LYS ARG VAL PHE SEQRES 22 B 286 GLU PRO GLU GLU LEU ALA ALA SER ILE ARG ARG ILE THR HET NAD A 301 44 HET MLA A 302 7 HET ZN A 303 1 HET MN A 304 1 HET NAD B 301 44 HET MLA B 302 7 HET ZN B 303 1 HET MN B 304 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 MLA 2(C3 H4 O4) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MN 2(MN 2+) FORMUL 11 HOH *618(H2 O) HELIX 1 AA1 GLY A 11 LYS A 22 1 12 HELIX 2 AA2 SER A 34 GLY A 46 1 13 HELIX 3 AA3 PRO A 51 ASP A 57 1 7 HELIX 4 AA4 PRO A 67 THR A 69 5 3 HELIX 5 AA5 LEU A 70 GLU A 79 1 10 HELIX 6 AA6 LYS A 80 LEU A 82 5 3 HELIX 7 AA7 ALA A 93 ALA A 98 1 6 HELIX 8 AA8 GLU A 125 ARG A 130 1 6 HELIX 9 AA9 PRO A 150 GLU A 152 5 3 HELIX 10 AB1 HIS A 153 TRP A 165 1 13 HELIX 11 AB2 THR A 175 GLU A 183 1 9 HELIX 12 AB3 VAL A 190 ARG A 208 1 19 HELIX 13 AB4 PRO A 211 PHE A 231 1 21 HELIX 14 AB5 SER A 239 MET A 254 1 16 HELIX 15 AB6 ASP A 257 PHE A 262 5 6 HELIX 16 AB7 GLU A 263 THR A 275 1 13 HELIX 17 AB8 GLY B 11 LYS B 22 1 12 HELIX 18 AB9 SER B 34 GLY B 46 1 13 HELIX 19 AC1 PRO B 51 ASP B 57 1 7 HELIX 20 AC2 PRO B 67 THR B 69 5 3 HELIX 21 AC3 LEU B 70 GLU B 79 1 10 HELIX 22 AC4 LYS B 80 LEU B 82 5 3 HELIX 23 AC5 ALA B 93 ALA B 98 1 6 HELIX 24 AC6 GLU B 125 ARG B 130 1 6 HELIX 25 AC7 GLU B 152 TRP B 165 1 14 HELIX 26 AC8 THR B 175 GLU B 183 1 9 HELIX 27 AC9 VAL B 190 ARG B 208 1 19 HELIX 28 AD1 PRO B 211 PHE B 231 1 21 HELIX 29 AD2 SER B 239 MET B 254 1 16 HELIX 30 AD3 ASP B 257 PHE B 262 5 6 HELIX 31 AD4 GLU B 263 THR B 275 1 13 SHEET 1 AA1 7 ASP A 27 VAL A 31 0 SHEET 2 AA1 7 SER A 3 PHE A 7 1 N ILE A 4 O ARG A 29 SHEET 3 AA1 7 VAL A 61 LEU A 64 1 O VAL A 63 N PHE A 7 SHEET 4 AA1 7 ILE A 87 VAL A 90 1 O VAL A 89 N VAL A 62 SHEET 5 AA1 7 THR A 108 PRO A 114 1 O THR A 108 N VAL A 88 SHEET 6 AA1 7 GLN A 140 GLN A 148 -1 O ALA A 145 N VAL A 111 SHEET 7 AA1 7 VAL A 168 ARG A 173 1 O HIS A 172 N ILE A 142 SHEET 1 AA2 7 ASP B 27 VAL B 31 0 SHEET 2 AA2 7 SER B 3 PHE B 7 1 N ILE B 4 O ARG B 29 SHEET 3 AA2 7 VAL B 61 LEU B 64 1 O VAL B 63 N PHE B 7 SHEET 4 AA2 7 ILE B 87 VAL B 90 1 O VAL B 89 N VAL B 62 SHEET 5 AA2 7 THR B 108 PRO B 114 1 O THR B 108 N VAL B 88 SHEET 6 AA2 7 GLN B 140 GLN B 148 -1 O ALA B 145 N VAL B 111 SHEET 7 AA2 7 VAL B 168 ARG B 173 1 O HIS B 172 N ILE B 142 LINK NE2 HIS A 113 ZN ZN A 303 1555 1555 2.28 LINK OE1 GLU A 183 ZN ZN A 303 1555 1555 2.03 LINK OE2 GLU A 183 MN MN A 304 1555 1555 2.21 LINK OE2 GLU A 188 MN MN A 304 1555 1555 2.17 LINK NE2 HIS A 222 ZN ZN B 303 1555 1555 2.29 LINK O3A MLA A 302 ZN ZN A 303 1555 1555 2.65 LINK O3B MLA A 302 ZN ZN A 303 1555 1555 2.14 LINK O1B MLA A 302 MN MN A 304 1555 1555 2.24 LINK O3B MLA A 302 MN MN A 304 1555 1555 2.39 LINK ZN ZN A 303 NE2 HIS B 222 1555 1555 2.28 LINK MN MN A 304 O HOH A 417 1555 1555 2.37 LINK MN MN A 304 O HOH A 515 1555 1555 2.34 LINK NE2 HIS B 113 ZN ZN B 303 1555 1555 2.28 LINK OE1 GLU B 183 ZN ZN B 303 1555 1555 2.04 LINK OE2 GLU B 183 MN MN B 304 1555 1555 2.28 LINK OE2 GLU B 188 MN MN B 304 1555 1555 2.16 LINK O1A MLA B 302 ZN ZN B 303 1555 1555 2.29 LINK O1B MLA B 302 ZN ZN B 303 1555 1555 2.60 LINK O1A MLA B 302 MN MN B 304 1555 1555 2.23 LINK O3B MLA B 302 MN MN B 304 1555 1555 2.31 LINK MN MN B 304 O HOH B 404 1555 1555 2.42 LINK MN MN B 304 O HOH B 525 1555 1555 2.41 CISPEP 1 ALA A 166 PRO A 167 0 -2.09 CISPEP 2 GLU A 183 PRO A 184 0 11.14 CISPEP 3 ALA B 166 PRO B 167 0 -1.65 CISPEP 4 GLU B 183 PRO B 184 0 10.97 CRYST1 71.485 75.629 104.523 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009567 0.00000 MTRIX1 1 -0.997172 -0.073208 0.017006 -71.94433 1 MTRIX2 1 -0.074766 0.989315 -0.125163 -2.69626 1 MTRIX3 1 -0.007662 -0.126081 -0.991990 -0.28413 1 CONECT 799 4158 CONECT 1344 4158 CONECT 1345 4159 CONECT 1379 4159 CONECT 1626 4211 CONECT 2851 4211 CONECT 3393 4211 CONECT 3394 4212 CONECT 3428 4212 CONECT 3681 4158 CONECT 4107 4108 4109 4110 4129 CONECT 4108 4107 CONECT 4109 4107 CONECT 4110 4107 4111 CONECT 4111 4110 4112 CONECT 4112 4111 4113 4114 CONECT 4113 4112 4118 CONECT 4114 4112 4115 4116 CONECT 4115 4114 CONECT 4116 4114 4117 4118 CONECT 4117 4116 CONECT 4118 4113 4116 4119 CONECT 4119 4118 4120 4128 CONECT 4120 4119 4121 CONECT 4121 4120 4122 CONECT 4122 4121 4123 4128 CONECT 4123 4122 4124 4125 CONECT 4124 4123 CONECT 4125 4123 4126 CONECT 4126 4125 4127 CONECT 4127 4126 4128 CONECT 4128 4119 4122 4127 CONECT 4129 4107 4130 CONECT 4130 4129 4131 4132 4133 CONECT 4131 4130 CONECT 4132 4130 CONECT 4133 4130 4134 CONECT 4134 4133 4135 CONECT 4135 4134 4136 4137 CONECT 4136 4135 4141 CONECT 4137 4135 4138 4139 CONECT 4138 4137 CONECT 4139 4137 4140 4141 CONECT 4140 4139 CONECT 4141 4136 4139 4142 CONECT 4142 4141 4143 4150 CONECT 4143 4142 4144 CONECT 4144 4143 4145 4148 CONECT 4145 4144 4146 4147 CONECT 4146 4145 CONECT 4147 4145 CONECT 4148 4144 4149 CONECT 4149 4148 4150 CONECT 4150 4142 4149 CONECT 4151 4152 4153 4154 CONECT 4152 4151 CONECT 4153 4151 4159 CONECT 4154 4151 4155 CONECT 4155 4154 4156 4157 CONECT 4156 4155 4158 CONECT 4157 4155 4158 4159 CONECT 4158 799 1344 3681 4156 CONECT 4158 4157 CONECT 4159 1345 1379 4153 4157 CONECT 4159 4229 4327 CONECT 4160 4161 4162 4163 4182 CONECT 4161 4160 CONECT 4162 4160 CONECT 4163 4160 4164 CONECT 4164 4163 4165 CONECT 4165 4164 4166 4167 CONECT 4166 4165 4171 CONECT 4167 4165 4168 4169 CONECT 4168 4167 CONECT 4169 4167 4170 4171 CONECT 4170 4169 CONECT 4171 4166 4169 4172 CONECT 4172 4171 4173 4181 CONECT 4173 4172 4174 CONECT 4174 4173 4175 CONECT 4175 4174 4176 4181 CONECT 4176 4175 4177 4178 CONECT 4177 4176 CONECT 4178 4176 4179 CONECT 4179 4178 4180 CONECT 4180 4179 4181 CONECT 4181 4172 4175 4180 CONECT 4182 4160 4183 CONECT 4183 4182 4184 4185 4186 CONECT 4184 4183 CONECT 4185 4183 CONECT 4186 4183 4187 CONECT 4187 4186 4188 CONECT 4188 4187 4189 4190 CONECT 4189 4188 4194 CONECT 4190 4188 4191 4192 CONECT 4191 4190 CONECT 4192 4190 4193 4194 CONECT 4193 4192 CONECT 4194 4189 4192 4195 CONECT 4195 4194 4196 4203 CONECT 4196 4195 4197 CONECT 4197 4196 4198 4201 CONECT 4198 4197 4199 4200 CONECT 4199 4198 CONECT 4200 4198 CONECT 4201 4197 4202 CONECT 4202 4201 4203 CONECT 4203 4195 4202 CONECT 4204 4205 4206 4207 CONECT 4205 4204 4211 4212 CONECT 4206 4204 4211 CONECT 4207 4204 4208 CONECT 4208 4207 4209 4210 CONECT 4209 4208 CONECT 4210 4208 4212 CONECT 4211 1626 2851 3393 4205 CONECT 4211 4206 CONECT 4212 3394 3428 4205 4210 CONECT 4212 4519 4640 CONECT 4229 4159 CONECT 4327 4159 CONECT 4519 4212 CONECT 4640 4212 MASTER 418 0 8 31 14 0 0 9 4807 2 124 44 END