HEADER OXIDOREDUCTASE 17-AUG-26 44YD TITLE CRYSTAL STRUCTURE OF D-LACTATE DEHYDROGENASE FROM LACTICASEIBACILLUS TITLE 2 RHAMNOSUS IN ITS APOFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTICASEIBACILLUS RHAMNOSUS; SOURCE 3 ORGANISM_TAXID: 47715; SOURCE 4 GENE: LRHM_0158; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LACTICASEIBACILLUS RHAMNOSUS, D-LACTATE, DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,A.A.POMETUN,A.A.LOGINOVA,V.O.POPOV,K.M.BOYKO REVDAT 1 04-NOV-26 44YD 0 JRNL AUTH A.A.LOGINOVA,A.S.KOTINA,P.V.CHACHIN,N.N.MORDKOVICH, JRNL AUTH 2 N.A.OKOROKOVA,S.Y.KLEYMENOV,A.A.SOKOLOVSKAYA,K.M.BOYKO, JRNL AUTH 3 I.O.MATYUTA,E.V.POMETUN,D.M.HUSHPULIAN,A.A.POMETUN JRNL TITL CRYSTAL STRUCTURE OF D-LACTATE DEHYDROGENASE FROM JRNL TITL 2 LACTICASEIBACILLUS RHAMNOSUS IN ITS APOFORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 37410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.09000 REMARK 3 B22 (A**2) : 3.28000 REMARK 3 B33 (A**2) : 2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5260 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4861 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7145 ; 2.063 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11170 ; 1.374 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 8.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;38.209 ;24.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 819 ;17.229 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6011 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1161 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2650 ; 4.165 ; 3.620 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2649 ; 4.163 ; 3.619 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3310 ; 5.975 ; 5.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3311 ; 5.975 ; 5.417 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 4.356 ; 3.850 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2611 ; 4.355 ; 3.851 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3834 ; 6.331 ; 5.675 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5814 ; 8.262 ;43.101 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5810 ; 8.262 ;43.114 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 335 B 7 335 9996 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 44YD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-26. REMARK 100 THE DEPOSITION ID IS D_1300077698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17UM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39444 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.36700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 2.81800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 65.32600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 ALA A 338 REMARK 465 PRO A 339 REMARK 465 ALA A 340 REMARK 465 LYS A 341 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 MET B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 THR B 337 REMARK 465 ALA B 338 REMARK 465 PRO B 339 REMARK 465 ALA B 340 REMARK 465 LYS B 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 6 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 149 CE NZ REMARK 470 HIS A 163 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN A 249 CG CD OE1 NE2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 LEU A 278 CG CD1 CD2 REMARK 470 PHE A 284 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 HIS B 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 163 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 170 CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 ARG B 242 NE CZ NH1 NH2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 ASN B 277 CG OD1 ND2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 SER B 283 OG REMARK 470 LYS B 285 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 7 43.11 37.64 REMARK 500 LEU A 59 106.50 -160.02 REMARK 500 SER A 109 85.16 -155.89 REMARK 500 THR A 161 52.40 -117.61 REMARK 500 HIS A 212 47.43 -145.07 REMARK 500 GLU A 225 -65.03 -29.95 REMARK 500 ALA A 241 -84.26 -85.35 REMARK 500 ALA A 279 -9.40 -58.18 REMARK 500 LYS A 280 -104.29 -137.63 REMARK 500 PHE A 284 26.14 46.96 REMARK 500 LYS A 285 -62.11 44.35 REMARK 500 ASP A 286 110.38 73.10 REMARK 500 ASP B 43 -165.94 -125.52 REMARK 500 ALA B 66 -53.82 -21.09 REMARK 500 ASN B 84 -166.00 -102.53 REMARK 500 VAL B 105 78.76 -118.84 REMARK 500 SER B 109 82.54 -160.15 REMARK 500 TYR B 185 72.68 -111.38 REMARK 500 MET B 187 132.96 -34.94 REMARK 500 ALA B 241 -92.57 -74.38 REMARK 500 LYS B 280 -31.39 138.95 REMARK 500 HIS B 281 -22.75 -149.67 REMARK 500 SER B 283 134.75 148.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 281 GLY A 282 -146.79 REMARK 500 REMARK 500 REMARK: NULL DBREF1 44YD A 10 341 UNP A0A7S7JGB1_LACRG DBREF2 44YD A A0A7S7JGB1 2 333 DBREF1 44YD B 10 341 UNP A0A7S7JGB1_LACRG DBREF2 44YD B A0A7S7JGB1 2 333 SEQADV 44YD MET A 1 UNP A0A7S7JGB INITIATING METHIONINE SEQADV 44YD GLY A 2 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD MET A 3 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 4 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 5 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 6 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 7 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 8 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS A 9 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD SER A 234 UNP A0A7S7JGB GLY 226 CONFLICT SEQADV 44YD MET B 1 UNP A0A7S7JGB INITIATING METHIONINE SEQADV 44YD GLY B 2 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD MET B 3 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 4 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 5 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 6 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 7 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 8 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD HIS B 9 UNP A0A7S7JGB EXPRESSION TAG SEQADV 44YD SER B 234 UNP A0A7S7JGB GLY 226 CONFLICT SEQRES 1 A 341 MET GLY MET HIS HIS HIS HIS HIS HIS LYS ILE ILE ALA SEQRES 2 A 341 TYR GLY ALA ARG VAL ASP GLU ILE GLN TYR PHE LYS GLN SEQRES 3 A 341 TRP ALA LYS GLU THR GLY ASN THR LEU GLU TYR HIS THR SEQRES 4 A 341 GLU PHE LEU ASP GLU HIS THR VAL GLU TRP ALA LYS GLY SEQRES 5 A 341 PHE ASP GLY ILE ASN SER LEU GLN THR THR PRO TYR ALA SEQRES 6 A 341 ALA GLY VAL PHE GLU LYS MET HIS GLU TYR GLY ILE LYS SEQRES 7 A 341 PHE LEU THR ILE ARG ASN VAL GLY THR ASP ASN ILE ASP SEQRES 8 A 341 MET ALA ALA MET ASN LYS TYR GLY ILE ARG LEU SER ASN SEQRES 9 A 341 VAL PRO ALA TYR SER PRO ALA ALA ILE ALA GLU PHE ALA SEQRES 10 A 341 LEU THR ASP THR LEU TYR LEU LEU ARG ASN MET GLY LYS SEQRES 11 A 341 VAL GLN ALA GLN LEU GLN ALA GLY ASP TYR GLU LYS ALA SEQRES 12 A 341 GLY THR PHE ILE GLY LYS GLU LEU GLY GLN GLN THR VAL SEQRES 13 A 341 GLY VAL MET GLY THR GLY HIS ILE GLY ARG VAL ALA ILE SEQRES 14 A 341 LYS LEU PHE LYS GLY PHE GLY ALA LYS VAL ILE ALA TYR SEQRES 15 A 341 ASP PRO TYR PRO MET LYS GLY ASP HIS PRO ASP PHE GLU SEQRES 16 A 341 TYR VAL SER LEU GLU GLU LEU PHE LYS GLN SER ASP ILE SEQRES 17 A 341 ILE ASP LEU HIS VAL PRO GLY ILE LYS GLN ASN THR HIS SEQRES 18 A 341 ILE ILE ASN GLU ALA ALA PHE ASP LEU MET LYS PRO SER SEQRES 19 A 341 VAL ILE VAL VAL ASN THR ALA ARG PRO ASN LEU ILE ASP SEQRES 20 A 341 THR GLN ALA MET LEU SER ASN LEU LYS SER GLY LYS LEU SEQRES 21 A 341 ALA GLY VAL GLY ILE ASP THR TYR GLU TYR GLU THR GLU SEQRES 22 A 341 ASP LEU LEU ASN LEU ALA LYS HIS GLY SER PHE LYS ASP SEQRES 23 A 341 PRO LEU TRP ASP GLU LEU LEU ALA MET PRO ASN VAL VAL SEQRES 24 A 341 LEU SER PRO HIS ILE ALA TYR TYR THR GLU THR ALA VAL SEQRES 25 A 341 HIS ASN MET VAL TYR PHE SER LEU GLN ASN LEU VAL ASP SEQRES 26 A 341 PHE LEU THR LYS GLY LYS THR ASN THR GLU VAL THR ALA SEQRES 27 A 341 PRO ALA LYS SEQRES 1 B 341 MET GLY MET HIS HIS HIS HIS HIS HIS LYS ILE ILE ALA SEQRES 2 B 341 TYR GLY ALA ARG VAL ASP GLU ILE GLN TYR PHE LYS GLN SEQRES 3 B 341 TRP ALA LYS GLU THR GLY ASN THR LEU GLU TYR HIS THR SEQRES 4 B 341 GLU PHE LEU ASP GLU HIS THR VAL GLU TRP ALA LYS GLY SEQRES 5 B 341 PHE ASP GLY ILE ASN SER LEU GLN THR THR PRO TYR ALA SEQRES 6 B 341 ALA GLY VAL PHE GLU LYS MET HIS GLU TYR GLY ILE LYS SEQRES 7 B 341 PHE LEU THR ILE ARG ASN VAL GLY THR ASP ASN ILE ASP SEQRES 8 B 341 MET ALA ALA MET ASN LYS TYR GLY ILE ARG LEU SER ASN SEQRES 9 B 341 VAL PRO ALA TYR SER PRO ALA ALA ILE ALA GLU PHE ALA SEQRES 10 B 341 LEU THR ASP THR LEU TYR LEU LEU ARG ASN MET GLY LYS SEQRES 11 B 341 VAL GLN ALA GLN LEU GLN ALA GLY ASP TYR GLU LYS ALA SEQRES 12 B 341 GLY THR PHE ILE GLY LYS GLU LEU GLY GLN GLN THR VAL SEQRES 13 B 341 GLY VAL MET GLY THR GLY HIS ILE GLY ARG VAL ALA ILE SEQRES 14 B 341 LYS LEU PHE LYS GLY PHE GLY ALA LYS VAL ILE ALA TYR SEQRES 15 B 341 ASP PRO TYR PRO MET LYS GLY ASP HIS PRO ASP PHE GLU SEQRES 16 B 341 TYR VAL SER LEU GLU GLU LEU PHE LYS GLN SER ASP ILE SEQRES 17 B 341 ILE ASP LEU HIS VAL PRO GLY ILE LYS GLN ASN THR HIS SEQRES 18 B 341 ILE ILE ASN GLU ALA ALA PHE ASP LEU MET LYS PRO SER SEQRES 19 B 341 VAL ILE VAL VAL ASN THR ALA ARG PRO ASN LEU ILE ASP SEQRES 20 B 341 THR GLN ALA MET LEU SER ASN LEU LYS SER GLY LYS LEU SEQRES 21 B 341 ALA GLY VAL GLY ILE ASP THR TYR GLU TYR GLU THR GLU SEQRES 22 B 341 ASP LEU LEU ASN LEU ALA LYS HIS GLY SER PHE LYS ASP SEQRES 23 B 341 PRO LEU TRP ASP GLU LEU LEU ALA MET PRO ASN VAL VAL SEQRES 24 B 341 LEU SER PRO HIS ILE ALA TYR TYR THR GLU THR ALA VAL SEQRES 25 B 341 HIS ASN MET VAL TYR PHE SER LEU GLN ASN LEU VAL ASP SEQRES 26 B 341 PHE LEU THR LYS GLY LYS THR ASN THR GLU VAL THR ALA SEQRES 27 B 341 PRO ALA LYS HET PEG A 401 7 HET PEG A 402 7 HET PEG B 401 7 HET PGE B 402 10 HET GOL B 403 6 HET PEG B 404 7 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PEG 4(C4 H10 O3) FORMUL 6 PGE C6 H14 O4 FORMUL 7 GOL C3 H8 O3 FORMUL 9 HOH *65(H2 O) HELIX 1 AA1 GLU A 20 GLY A 32 1 13 HELIX 2 AA2 HIS A 45 LYS A 51 5 7 HELIX 3 AA3 ALA A 65 TYR A 75 1 11 HELIX 4 AA4 ASP A 91 TYR A 98 1 8 HELIX 5 AA5 SER A 109 ARG A 126 1 18 HELIX 6 AA6 ASN A 127 ALA A 137 1 11 HELIX 7 AA7 ASP A 139 GLY A 144 1 6 HELIX 8 AA8 GLU A 150 GLN A 153 5 4 HELIX 9 AA9 GLY A 162 PHE A 175 1 14 HELIX 10 AB1 SER A 198 SER A 206 1 9 HELIX 11 AB2 ILE A 216 THR A 220 5 5 HELIX 12 AB3 ASN A 224 MET A 231 1 8 HELIX 13 AB4 ASP A 247 SER A 257 1 11 HELIX 14 AB5 TYR A 270 ASN A 277 1 8 HELIX 15 AB6 LEU A 278 LYS A 280 5 3 HELIX 16 AB7 ASP A 286 MET A 295 1 10 HELIX 17 AB8 THR A 308 GLY A 330 1 23 HELIX 18 AB9 GLU B 20 GLY B 32 1 13 HELIX 19 AC1 HIS B 45 LYS B 51 5 7 HELIX 20 AC2 ALA B 65 TYR B 75 1 11 HELIX 21 AC3 ASP B 91 TYR B 98 1 8 HELIX 22 AC4 SER B 109 ARG B 126 1 18 HELIX 23 AC5 ASN B 127 ALA B 137 1 11 HELIX 24 AC6 ASP B 139 GLY B 144 1 6 HELIX 25 AC7 GLU B 150 GLN B 153 5 4 HELIX 26 AC8 GLY B 162 GLY B 174 1 13 HELIX 27 AC9 SER B 198 SER B 206 1 9 HELIX 28 AD1 ILE B 216 THR B 220 5 5 HELIX 29 AD2 ASN B 224 MET B 231 1 8 HELIX 30 AD3 ASP B 247 SER B 257 1 11 HELIX 31 AD4 TYR B 270 ASN B 277 1 8 HELIX 32 AD5 ASP B 286 MET B 295 1 10 HELIX 33 AD6 THR B 308 GLY B 330 1 23 SHEET 1 AA1 6 THR A 34 TYR A 37 0 SHEET 2 AA1 6 LYS A 10 ALA A 13 1 N ILE A 11 O GLU A 36 SHEET 3 AA1 6 ILE A 56 SER A 58 1 O ASN A 57 N ILE A 12 SHEET 4 AA1 6 PHE A 79 ILE A 82 1 O THR A 81 N ILE A 56 SHEET 5 AA1 6 ARG A 101 SER A 103 1 O ARG A 101 N LEU A 80 SHEET 6 AA1 6 GLU A 335 VAL A 336 -1 O VAL A 336 N LEU A 102 SHEET 1 AA2 7 GLU A 195 TYR A 196 0 SHEET 2 AA2 7 LYS A 178 TYR A 182 1 N ALA A 181 O GLU A 195 SHEET 3 AA2 7 THR A 155 MET A 159 1 N VAL A 156 O LYS A 178 SHEET 4 AA2 7 ILE A 208 LEU A 211 1 O ILE A 208 N GLY A 157 SHEET 5 AA2 7 VAL A 235 ASN A 239 1 O VAL A 238 N ILE A 209 SHEET 6 AA2 7 LEU A 260 ILE A 265 1 O ALA A 261 N VAL A 235 SHEET 7 AA2 7 VAL A 298 LEU A 300 1 O VAL A 299 N ILE A 265 SHEET 1 AA3 5 THR B 34 TYR B 37 0 SHEET 2 AA3 5 LYS B 10 ALA B 13 1 N ALA B 13 O GLU B 36 SHEET 3 AA3 5 ILE B 56 SER B 58 1 O ASN B 57 N ILE B 12 SHEET 4 AA3 5 PHE B 79 ILE B 82 1 O THR B 81 N ILE B 56 SHEET 5 AA3 5 ARG B 101 SER B 103 1 O SER B 103 N ILE B 82 SHEET 1 AA4 7 GLU B 195 TYR B 196 0 SHEET 2 AA4 7 LYS B 178 TYR B 182 1 N ALA B 181 O GLU B 195 SHEET 3 AA4 7 THR B 155 MET B 159 1 N VAL B 156 O LYS B 178 SHEET 4 AA4 7 ILE B 208 LEU B 211 1 O ILE B 208 N GLY B 157 SHEET 5 AA4 7 VAL B 235 ASN B 239 1 O VAL B 238 N ILE B 209 SHEET 6 AA4 7 LEU B 260 ILE B 265 1 O GLY B 264 N ASN B 239 SHEET 7 AA4 7 VAL B 298 LEU B 300 1 O VAL B 299 N VAL B 263 CRYST1 65.326 80.250 70.225 90.00 110.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015308 0.000000 0.005829 0.00000 SCALE2 0.000000 0.012461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015237 0.00000 CONECT 5104 5105 5106 CONECT 5105 5104 CONECT 5106 5104 5107 CONECT 5107 5106 5108 CONECT 5108 5107 5109 CONECT 5109 5108 5110 CONECT 5110 5109 CONECT 5111 5112 5113 CONECT 5112 5111 CONECT 5113 5111 5114 CONECT 5114 5113 5115 CONECT 5115 5114 5116 CONECT 5116 5115 5117 CONECT 5117 5116 CONECT 5118 5119 5120 CONECT 5119 5118 CONECT 5120 5118 5121 CONECT 5121 5120 5122 CONECT 5122 5121 5123 CONECT 5123 5122 5124 CONECT 5124 5123 CONECT 5125 5126 5127 CONECT 5126 5125 CONECT 5127 5125 5128 CONECT 5128 5127 5129 CONECT 5129 5128 5130 CONECT 5130 5129 5134 CONECT 5131 5132 CONECT 5132 5131 5133 CONECT 5133 5132 5134 CONECT 5134 5130 5133 CONECT 5135 5136 5137 CONECT 5136 5135 CONECT 5137 5135 5138 5139 CONECT 5138 5137 CONECT 5139 5137 5140 CONECT 5140 5139 CONECT 5141 5142 5143 CONECT 5142 5141 CONECT 5143 5141 5144 CONECT 5144 5143 5145 CONECT 5145 5144 5146 CONECT 5146 5145 5147 CONECT 5147 5146 MASTER 377 0 6 33 25 0 0 6 5201 2 44 54 END