HEADER VIRAL PROTEIN 21-AUG-26 45AZ TITLE CRYSTAL STRUCTURE OF THE EMERGING SONGLING VIRUS NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SONGLING VIRUS; SOURCE 3 ORGANISM_TAXID: 2795181; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1452720 KEYWDS ORTHONAIROVIRUS SONGLINGENSE, VIRAL NUCLEOPROTEIN MONOMER, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.O.YANSHIN,V.A.POSPELOV,E.O.UKLADOV,V.I.BORSHCHEVSKIY,A.V.GLADYSHEVA REVDAT 1 16-SEP-26 45AZ 0 SPRSDE 16-SEP-26 45AZ 9X6Q JRNL AUTH A.YANSHIN,V.POSPELOV,E.UKLAVOV,V.TUYRIN,V.BORSHCHEVSKIY, JRNL AUTH 2 I.OSINKINA,N.RADCHENKO,Y.RYZHYKAU,S.ARKHIPOV,A.AGAFONOV, JRNL AUTH 3 I.IMATDINOV,A.GLADYSHEVA JRNL TITL CRYSTAL STRUCTURE OF THE NUCLEOPROTEIN FROM THE EMERGING JRNL TITL 2 HUMAN PATHOGEN SONGLING VIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 91499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5600 - 4.8200 0.99 6754 151 0.1663 0.1882 REMARK 3 2 4.8200 - 3.8300 1.00 6517 145 0.1489 0.1723 REMARK 3 3 3.8200 - 3.3400 1.00 6450 142 0.1753 0.2090 REMARK 3 4 3.3400 - 3.0400 1.00 6405 144 0.2010 0.2335 REMARK 3 5 3.0400 - 2.8200 1.00 6420 143 0.2130 0.2780 REMARK 3 6 2.8200 - 2.6500 1.00 6358 142 0.2077 0.2547 REMARK 3 7 2.6500 - 2.5200 1.00 6339 142 0.2076 0.2325 REMARK 3 8 2.5200 - 2.4100 1.00 6375 142 0.2199 0.2723 REMARK 3 9 2.4100 - 2.3200 1.00 6316 141 0.2384 0.2978 REMARK 3 10 2.3200 - 2.2400 1.00 6335 141 0.2658 0.2854 REMARK 3 11 2.2400 - 2.1700 1.00 6298 142 0.2935 0.3262 REMARK 3 12 2.1700 - 2.1100 1.00 6303 139 0.3206 0.3519 REMARK 3 13 2.1100 - 2.0500 1.00 6348 141 0.3617 0.3619 REMARK 3 14 2.0500 - 2.0000 1.00 6285 141 0.3996 0.4466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.316 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.582 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7568 REMARK 3 ANGLE : 0.912 10262 REMARK 3 CHIRALITY : 0.059 1116 REMARK 3 PLANARITY : 0.009 1317 REMARK 3 DIHEDRAL : 15.754 2710 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 45AZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-26. REMARK 100 THE DEPOSITION ID IS D_1300078582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90 MM LINAK (0.3 M LITHIUM SULFATE, REMARK 280 0.3 M SODIUM SULFATE, 0.3 M POTASSIUM SULFATE); 0.1 M BUFFER REMARK 280 SYSTEM 4 (1.0M MOPSO, BIS-TRIS, PH 6.5); PH 6.5; 50 % V/V REMARK 280 PRECIPITANT MIX 6 (25% W/V PEG 4000, 40% W/V 1,2,6- HEXANETRIOL), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.95500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 183 REMARK 465 GLY A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 LYS A 187 REMARK 465 ALA A 188 REMARK 465 PRO A 189 REMARK 465 ALA A 190 REMARK 465 LEU A 191 REMARK 465 GLU B 182 REMARK 465 PRO B 183 REMARK 465 GLY B 184 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 LYS B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 54 NE CZ NH1 NH2 REMARK 470 LYS A 97 CE NZ REMARK 470 LYS A 169 CD CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 ILE A 181 CG1 CG2 CD1 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 HIS A 192 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 193 CG1 CG2 CD1 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 PHE A 196 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 197 CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 SER A 202 OG REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 SER A 213 OG REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ASN A 218 CG OD1 ND2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 THR A 222 OG1 CG2 REMARK 470 LEU A 224 CG CD1 CD2 REMARK 470 LEU A 232 CG CD1 CD2 REMARK 470 VAL A 233 CG1 CG2 REMARK 470 ASN A 234 CG OD1 ND2 REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LEU A 247 CG CD1 CD2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 THR A 249 OG1 CG2 REMARK 470 ILE A 250 CG1 CG2 CD1 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 ASN A 266 CG OD1 ND2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 VAL A 282 CG1 CG2 REMARK 470 LEU A 286 CG CD1 CD2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 LEU A 340 CG CD1 CD2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ARG B 54 NE CZ NH1 NH2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 97 NZ REMARK 470 LYS B 103 NZ REMARK 470 LYS B 106 CE NZ REMARK 470 LYS B 136 CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LEU B 191 CG CD1 CD2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 GLN B 242 CG CD OE1 NE2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 LYS B 276 CE NZ REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 ASN B 295 CG OD1 ND2 REMARK 470 LEU B 340 CG CD1 CD2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 SER B 369 OG REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 205 0.54 -65.91 REMARK 500 SER A 213 121.87 -174.11 REMARK 500 LYS A 217 81.15 73.31 REMARK 500 ASN A 218 -74.15 -98.45 REMARK 500 LYS A 236 -131.28 57.81 REMARK 500 THR A 239 -136.07 56.29 REMARK 500 SER A 386 -66.92 -101.21 REMARK 500 GLU A 399 77.47 -150.30 REMARK 500 ASN A 422 68.50 61.35 REMARK 500 LYS B 180 42.85 -87.49 REMARK 500 LEU B 191 -47.81 71.89 REMARK 500 TRP B 211 29.90 -147.65 REMARK 500 ALA B 343 -17.79 67.04 REMARK 500 SER B 386 -68.10 -100.29 REMARK 500 GLU B 399 77.46 -154.38 REMARK 500 LYS B 402 -2.76 -59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 240 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 793 DISTANCE = 6.15 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1JW A 503 REMARK 610 1JW B 501 REMARK 610 1JW B 502 REMARK 610 1JW B 505 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 258 O REMARK 620 2 LEU A 260 O 76.6 REMARK 620 3 PHE A 263 O 82.2 72.7 REMARK 620 4 HOH A 705 O 107.4 150.6 79.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 258 O REMARK 620 2 LEU B 260 O 91.5 REMARK 620 3 PHE B 263 O 92.1 84.4 REMARK 620 4 HOH B 732 O 172.1 94.3 83.2 REMARK 620 N 1 2 3 DBREF1 45AZ A 2 483 UNP A0A7U3T2R1_9VIRU DBREF2 45AZ A A0A7U3T2R1 6 487 DBREF1 45AZ B 2 483 UNP A0A7U3T2R1_9VIRU DBREF2 45AZ B A0A7U3T2R1 6 487 SEQADV 45AZ SER A 1 UNP A0A7U3T2R EXPRESSION TAG SEQADV 45AZ THR A 273 UNP A0A7U3T2R ALA 277 CONFLICT SEQADV 45AZ SER A 365 UNP A0A7U3T2R ALA 369 CONFLICT SEQADV 45AZ SER B 1 UNP A0A7U3T2R EXPRESSION TAG SEQADV 45AZ THR B 273 UNP A0A7U3T2R ALA 277 CONFLICT SEQADV 45AZ SER B 365 UNP A0A7U3T2R ALA 369 CONFLICT SEQRES 1 A 483 SER SER GLN LEU THR PHE SER ASP LYS GLY GLY LEU ASP SEQRES 2 A 483 THR TRP TYR LYS GLY PHE LYS SER SER LEU GLY PHE ASP SEQRES 3 A 483 LEU LEU SER THR LEU THR TYR SER GLU SER LEU CYS LYS SEQRES 4 A 483 GLU VAL LEU GLY PRO HIS SER LEU ASP ILE LYS SER ALA SEQRES 5 A 483 SER ARG GLU LYS ASP ALA GLU ILE ALA ARG LEU MET HIS SEQRES 6 A 483 GLU ARG LEU LYS ASP MET ALA PRO VAL TYR GLU CYS ALA SEQRES 7 A 483 TRP THR SER CYS ASP GLY ILE VAL ARG ARG SER PHE ASP SEQRES 8 A 483 TRP PHE GLU LYS ASN LYS ASP HIS LYS ASN MET LYS TRP SEQRES 9 A 483 SER LYS GLU TYR GLU SER LEU LYS LYS ALA VAL PRO SER SEQRES 10 A 483 SER ASP GLN VAL LEU GLN TYR GLN GLU ALA ALA LEU GLU SEQRES 11 A 483 TRP ARG ASN ALA ILE LYS TYR GLU ILE ASN SER PHE THR SEQRES 12 A 483 THR ALA SER LYS ASP SER VAL VAL LYS ILE TYR ARG VAL SEQRES 13 A 483 GLY ALA ASP ILE VAL THR ASP ILE GLN ASP LEU LEU LYS SEQRES 14 A 483 ASP MET GLN ARG ARG ARG ASN THR ALA LEU LYS ILE GLU SEQRES 15 A 483 PRO GLY GLN GLU LYS ALA PRO ALA LEU HIS ILE GLU ALA SEQRES 16 A 483 PHE LYS GLU TRP LEU ASP SER LYS ASP TYR THR ALA PRO SEQRES 17 A 483 CYS PRO TRP GLY SER TRP THR LYS LYS ASN LYS GLY GLY SEQRES 18 A 483 THR SER LEU ALA VAL THR ALA CYS ALA GLY LEU VAL ASN SEQRES 19 A 483 LYS LYS TYR ARG THR ARG ASP GLN LEU LYS ALA GLU LEU SEQRES 20 A 483 GLU THR ILE GLY THR GLU VAL GLU ALA MET GLY GLU LEU SEQRES 21 A 483 ALA GLU PHE ASP LYS ASN PHE CYS LYS GLU GLN GLY THR SEQRES 22 A 483 PHE PHE LYS SER LEU TRP SER THR VAL ASP GLY PHE LEU SEQRES 23 A 483 SER GLY THR GLN ALA GLY SER LYS ASN SER GLY PHE VAL SEQRES 24 A 483 GLN GLN GLY SER ALA ILE ASP THR ALA PHE SER SER HIS SEQRES 25 A 483 TYR TRP ALA TRP LYS ALA GLY VAL ARG PRO GLU LEU PHE SEQRES 26 A 483 PRO THR LEU SER SER MET LEU PHE ASN LEU GLY LYS ALA SEQRES 27 A 483 PRO LEU GLY LYS ALA LYS VAL ILE LYS LYS LEU LYS GLU SEQRES 28 A 483 SER PRO PHE VAL TRP ALA GLN THR MET SER GLU MET PHE SEQRES 29 A 483 SER GLN VAL GLU SER ASP ALA ILE HIS MET HIS PRO GLY SEQRES 30 A 483 ILE LEU THR PRO GLY ARG ILE CYS SER ASP MET VAL CYS SEQRES 31 A 483 ALA PHE GLY ALA PHE PRO VAL ALA GLU PRO ALA LYS ILE SEQRES 32 A 483 ARG ASP GLY SER SER SER PRO ARG PHE LEU LEU ASN LEU SEQRES 33 A 483 ARG SER ASP GLY GLU ASN PRO ALA GLY GLN SER ILE CYS SEQRES 34 A 483 ALA LEU PHE ARG GLU TYR LYS GLN GLU TYR SER GLY TRP SEQRES 35 A 483 GLN ASP GLN GLU ILE VAL PRO VAL GLU HIS MET LEU HIS SEQRES 36 A 483 GLN SER PHE LEU SER LYS HIS GLY PRO PHE VAL ASN VAL SEQRES 37 A 483 TYR GLN VAL GLN GLY LEU ALA LEU ALA VAL LYS ILE GLN SEQRES 38 A 483 GLY ILE SEQRES 1 B 483 SER SER GLN LEU THR PHE SER ASP LYS GLY GLY LEU ASP SEQRES 2 B 483 THR TRP TYR LYS GLY PHE LYS SER SER LEU GLY PHE ASP SEQRES 3 B 483 LEU LEU SER THR LEU THR TYR SER GLU SER LEU CYS LYS SEQRES 4 B 483 GLU VAL LEU GLY PRO HIS SER LEU ASP ILE LYS SER ALA SEQRES 5 B 483 SER ARG GLU LYS ASP ALA GLU ILE ALA ARG LEU MET HIS SEQRES 6 B 483 GLU ARG LEU LYS ASP MET ALA PRO VAL TYR GLU CYS ALA SEQRES 7 B 483 TRP THR SER CYS ASP GLY ILE VAL ARG ARG SER PHE ASP SEQRES 8 B 483 TRP PHE GLU LYS ASN LYS ASP HIS LYS ASN MET LYS TRP SEQRES 9 B 483 SER LYS GLU TYR GLU SER LEU LYS LYS ALA VAL PRO SER SEQRES 10 B 483 SER ASP GLN VAL LEU GLN TYR GLN GLU ALA ALA LEU GLU SEQRES 11 B 483 TRP ARG ASN ALA ILE LYS TYR GLU ILE ASN SER PHE THR SEQRES 12 B 483 THR ALA SER LYS ASP SER VAL VAL LYS ILE TYR ARG VAL SEQRES 13 B 483 GLY ALA ASP ILE VAL THR ASP ILE GLN ASP LEU LEU LYS SEQRES 14 B 483 ASP MET GLN ARG ARG ARG ASN THR ALA LEU LYS ILE GLU SEQRES 15 B 483 PRO GLY GLN GLU LYS ALA PRO ALA LEU HIS ILE GLU ALA SEQRES 16 B 483 PHE LYS GLU TRP LEU ASP SER LYS ASP TYR THR ALA PRO SEQRES 17 B 483 CYS PRO TRP GLY SER TRP THR LYS LYS ASN LYS GLY GLY SEQRES 18 B 483 THR SER LEU ALA VAL THR ALA CYS ALA GLY LEU VAL ASN SEQRES 19 B 483 LYS LYS TYR ARG THR ARG ASP GLN LEU LYS ALA GLU LEU SEQRES 20 B 483 GLU THR ILE GLY THR GLU VAL GLU ALA MET GLY GLU LEU SEQRES 21 B 483 ALA GLU PHE ASP LYS ASN PHE CYS LYS GLU GLN GLY THR SEQRES 22 B 483 PHE PHE LYS SER LEU TRP SER THR VAL ASP GLY PHE LEU SEQRES 23 B 483 SER GLY THR GLN ALA GLY SER LYS ASN SER GLY PHE VAL SEQRES 24 B 483 GLN GLN GLY SER ALA ILE ASP THR ALA PHE SER SER HIS SEQRES 25 B 483 TYR TRP ALA TRP LYS ALA GLY VAL ARG PRO GLU LEU PHE SEQRES 26 B 483 PRO THR LEU SER SER MET LEU PHE ASN LEU GLY LYS ALA SEQRES 27 B 483 PRO LEU GLY LYS ALA LYS VAL ILE LYS LYS LEU LYS GLU SEQRES 28 B 483 SER PRO PHE VAL TRP ALA GLN THR MET SER GLU MET PHE SEQRES 29 B 483 SER GLN VAL GLU SER ASP ALA ILE HIS MET HIS PRO GLY SEQRES 30 B 483 ILE LEU THR PRO GLY ARG ILE CYS SER ASP MET VAL CYS SEQRES 31 B 483 ALA PHE GLY ALA PHE PRO VAL ALA GLU PRO ALA LYS ILE SEQRES 32 B 483 ARG ASP GLY SER SER SER PRO ARG PHE LEU LEU ASN LEU SEQRES 33 B 483 ARG SER ASP GLY GLU ASN PRO ALA GLY GLN SER ILE CYS SEQRES 34 B 483 ALA LEU PHE ARG GLU TYR LYS GLN GLU TYR SER GLY TRP SEQRES 35 B 483 GLN ASP GLN GLU ILE VAL PRO VAL GLU HIS MET LEU HIS SEQRES 36 B 483 GLN SER PHE LEU SER LYS HIS GLY PRO PHE VAL ASN VAL SEQRES 37 B 483 TYR GLN VAL GLN GLY LEU ALA LEU ALA VAL LYS ILE GLN SEQRES 38 B 483 GLY ILE HET 1JW A 501 9 HET 1JW A 502 9 HET 1JW A 503 7 HET NA A 504 1 HET 1JW A 505 9 HET 1JW B 501 8 HET 1JW B 502 7 HET 1JW B 503 9 HET 1JW B 504 9 HET 1JW B 505 8 HET NA B 506 1 HETNAM 1JW (2S)-HEXANE-1,2,6-TRIOL HETNAM NA SODIUM ION HETSYN 1JW (-)-1,2,6-HEXANETRIOL; 6999990 FORMUL 3 1JW 9(C6 H14 O3) FORMUL 6 NA 2(NA 1+) FORMUL 14 HOH *398(H2 O) HELIX 1 AA1 ASP A 8 GLY A 24 1 17 HELIX 2 AA2 ALA A 52 LYS A 69 1 18 HELIX 3 AA3 PRO A 73 SER A 81 1 9 HELIX 4 AA4 CYS A 82 ASN A 96 1 15 HELIX 5 AA5 HIS A 99 ASN A 101 5 3 HELIX 6 AA6 MET A 102 GLU A 107 1 6 HELIX 7 AA7 GLU A 107 LYS A 112 1 6 HELIX 8 AA8 SER A 117 ILE A 135 1 19 HELIX 9 AA9 ASN A 140 THR A 144 5 5 HELIX 10 AB1 GLY A 157 ILE A 181 1 25 HELIX 11 AB2 ILE A 193 LYS A 203 1 11 HELIX 12 AB3 SER A 223 VAL A 233 1 11 HELIX 13 AB4 ARG A 240 GLU A 259 1 20 HELIX 14 AB5 ASP A 264 GLY A 288 1 25 HELIX 15 AB6 GLN A 300 ALA A 304 5 5 HELIX 16 AB7 ASP A 306 ALA A 318 1 13 HELIX 17 AB8 ARG A 321 GLU A 323 5 3 HELIX 18 AB9 LEU A 324 LYS A 337 1 14 HELIX 19 AC1 GLY A 341 GLU A 351 1 11 HELIX 20 AC2 PHE A 354 GLU A 362 1 9 HELIX 21 AC3 THR A 380 GLY A 393 1 14 HELIX 22 AC4 GLU A 399 GLY A 406 5 8 HELIX 23 AC5 SER A 409 LEU A 416 5 8 HELIX 24 AC6 ASN A 422 TYR A 439 1 18 HELIX 25 AC7 GLY A 441 GLN A 445 5 5 HELIX 26 AC8 VAL A 448 SER A 460 1 13 HELIX 27 AC9 LEU A 474 VAL A 478 5 5 HELIX 28 AD1 ASP B 8 LEU B 23 1 16 HELIX 29 AD2 ALA B 52 LYS B 69 1 18 HELIX 30 AD3 PRO B 73 SER B 81 1 9 HELIX 31 AD4 CYS B 82 ASN B 96 1 15 HELIX 32 AD5 HIS B 99 ASN B 101 5 3 HELIX 33 AD6 MET B 102 GLU B 107 1 6 HELIX 34 AD7 GLU B 107 LYS B 112 1 6 HELIX 35 AD8 SER B 117 ILE B 135 1 19 HELIX 36 AD9 ASN B 140 THR B 144 5 5 HELIX 37 AE1 ILE B 160 LYS B 180 1 21 HELIX 38 AE2 LEU B 191 LYS B 203 1 13 HELIX 39 AE3 SER B 223 LYS B 235 1 13 HELIX 40 AE4 THR B 239 GLY B 258 1 20 HELIX 41 AE5 ASP B 264 SER B 287 1 24 HELIX 42 AE6 GLN B 300 ALA B 304 5 5 HELIX 43 AE7 ASP B 306 GLY B 319 1 14 HELIX 44 AE8 ARG B 321 GLU B 323 5 3 HELIX 45 AE9 LEU B 324 LYS B 337 1 14 HELIX 46 AF1 LYS B 344 GLU B 351 1 8 HELIX 47 AF2 PHE B 354 GLU B 362 1 9 HELIX 48 AF3 THR B 380 GLY B 393 1 14 HELIX 49 AF4 GLU B 399 ASP B 405 5 7 HELIX 50 AF5 SER B 409 LEU B 416 5 8 HELIX 51 AF6 ASN B 422 TYR B 439 1 18 HELIX 52 AF7 GLY B 441 GLN B 445 5 5 HELIX 53 AF8 VAL B 448 SER B 460 1 13 HELIX 54 AF9 LEU B 474 VAL B 478 5 5 SHEET 1 AA1 2 ILE A 153 VAL A 156 0 SHEET 2 AA1 2 LYS A 479 GLY A 482 1 O LYS A 479 N TYR A 154 SHEET 1 AA2 2 ILE B 153 VAL B 156 0 SHEET 2 AA2 2 LYS B 479 GLY B 482 1 O LYS B 479 N TYR B 154 LINK O GLY A 258 NA NA A 504 1555 1555 3.04 LINK O LEU A 260 NA NA A 504 1555 1555 2.63 LINK O PHE A 263 NA NA A 504 1555 1555 2.67 LINK NA NA A 504 O HOH A 705 1555 1555 2.76 LINK O GLY B 258 NA NA B 506 1555 1555 2.45 LINK O LEU B 260 NA NA B 506 1555 1555 2.37 LINK O PHE B 263 NA NA B 506 1555 1555 2.44 LINK NA NA B 506 O HOH B 732 1555 1555 2.71 CRYST1 54.530 113.480 215.910 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004632 0.00000 CONECT 1890 7338 CONECT 1899 7338 CONECT 1921 7338 CONECT 5594 7389 CONECT 5607 7389 CONECT 5629 7389 CONECT 7313 7314 7317 CONECT 7314 7313 7315 CONECT 7315 7314 7316 CONECT 7316 7315 CONECT 7317 7313 7318 CONECT 7318 7317 7319 7321 CONECT 7319 7318 7320 CONECT 7320 7319 CONECT 7321 7318 CONECT 7322 7323 7326 CONECT 7323 7322 7324 CONECT 7324 7323 7325 CONECT 7325 7324 CONECT 7326 7322 7327 CONECT 7327 7326 7328 7330 CONECT 7328 7327 7329 CONECT 7329 7328 CONECT 7330 7327 CONECT 7331 7332 7333 CONECT 7332 7331 CONECT 7333 7331 7334 CONECT 7334 7333 7335 7337 CONECT 7335 7334 7336 CONECT 7336 7335 CONECT 7337 7334 CONECT 7338 1890 1899 1921 7494 CONECT 7339 7340 7343 CONECT 7340 7339 7341 CONECT 7341 7340 7342 CONECT 7342 7341 CONECT 7343 7339 7344 CONECT 7344 7343 7345 7347 CONECT 7345 7344 7346 CONECT 7346 7345 CONECT 7347 7344 CONECT 7348 7349 7352 CONECT 7349 7348 7350 CONECT 7350 7349 7351 CONECT 7351 7350 CONECT 7352 7348 7353 CONECT 7353 7352 7354 CONECT 7354 7353 7355 CONECT 7355 7354 CONECT 7356 7357 7358 CONECT 7357 7356 CONECT 7358 7356 7359 CONECT 7359 7358 7360 7362 CONECT 7360 7359 7361 CONECT 7361 7360 CONECT 7362 7359 CONECT 7363 7364 7367 CONECT 7364 7363 7365 CONECT 7365 7364 7366 CONECT 7366 7365 CONECT 7367 7363 7368 CONECT 7368 7367 7369 7371 CONECT 7369 7368 7370 CONECT 7370 7369 CONECT 7371 7368 CONECT 7372 7373 7376 CONECT 7373 7372 7374 CONECT 7374 7373 7375 CONECT 7375 7374 CONECT 7376 7372 7377 CONECT 7377 7376 7378 7380 CONECT 7378 7377 7379 CONECT 7379 7378 CONECT 7380 7377 CONECT 7381 7382 7384 CONECT 7382 7381 7383 CONECT 7383 7382 CONECT 7384 7381 7385 CONECT 7385 7384 7386 7388 CONECT 7386 7385 7387 CONECT 7387 7386 CONECT 7388 7385 CONECT 7389 5594 5607 5629 7726 CONECT 7494 7338 CONECT 7726 7389 MASTER 422 0 11 54 4 0 0 6 7702 2 85 76 END