data_460D # _entry.id 460D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 460D pdb_0000460d 10.2210/pdb460d/pdb RCSB BD0012 ? ? WWPDB D_1000179240 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-04-08 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.conn_type_id' 27 4 'Structure model' '_struct_conn.id' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr1_symmetry' 38 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 4 'Structure model' '_struct_conn.ptnr2_symmetry' 46 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 47 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 48 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 460D _pdbx_database_status.recvd_initial_deposition_date 1999-03-12 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tereshko, V.' 1 'Minasov, G.' 2 'Egli, M.' 3 # _citation.id primary _citation.title ;A "Hydrat-Ion Spine" in a B-DNA minor groove ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 121 _citation.page_first 3590 _citation.page_last 3595 _citation.year 1999 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tereshko, V.' 1 ? primary 'Minasov, G.' 2 ? primary 'Egli, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') ; 3681.383 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'RUBIDIUM ION' 85.468 1 ? ? ? ? 4 water nat water 18.015 189 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TAF)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'RUBIDIUM ION' RB 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 TAF n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 RB non-polymer . 'RUBIDIUM ION' ? 'Rb 1' 85.468 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 TAF 7 7 7 TAF TAF A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 TAF 7 19 19 TAF TAF B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MG A . D 3 RB 1 110 110 RB RB B . E 2 MG 1 32 32 MG MG B . F 2 MG 1 38 38 MG MG B . G 4 HOH 1 26 26 HOH TIP A . G 4 HOH 2 28 28 HOH TIP A . G 4 HOH 3 39 39 HOH TIP A . G 4 HOH 4 40 40 HOH TIP A . G 4 HOH 5 43 43 HOH TIP A . G 4 HOH 6 53 53 HOH TIP A . G 4 HOH 7 57 57 HOH TIP A . G 4 HOH 8 60 60 HOH TIP A . G 4 HOH 9 61 61 HOH TIP A . G 4 HOH 10 62 62 HOH TIP A . G 4 HOH 11 63 63 HOH TIP A . G 4 HOH 12 64 64 HOH TIP A . G 4 HOH 13 65 65 HOH TIP A . G 4 HOH 14 67 67 HOH TIP A . G 4 HOH 15 68 68 HOH TIP A . G 4 HOH 16 76 76 HOH TIP A . G 4 HOH 17 78 78 HOH TIP A . G 4 HOH 18 101 101 HOH TIP A . G 4 HOH 19 102 102 HOH TIP A . G 4 HOH 20 103 103 HOH TIP A . G 4 HOH 21 106 106 HOH TIP A . G 4 HOH 22 107 107 HOH TIP A . G 4 HOH 23 108 108 HOH TIP A . G 4 HOH 24 112 112 HOH TIP A . G 4 HOH 25 113 113 HOH TIP A . G 4 HOH 26 114 114 HOH TIP A . G 4 HOH 27 117 117 HOH TIP A . G 4 HOH 28 118 118 HOH TIP A . G 4 HOH 29 120 120 HOH TIP A . G 4 HOH 30 122 122 HOH TIP A . G 4 HOH 31 123 123 HOH TIP A . G 4 HOH 32 124 124 HOH TIP A . G 4 HOH 33 125 125 HOH TIP A . G 4 HOH 34 126 126 HOH TIP A . G 4 HOH 35 133 133 HOH TIP A . G 4 HOH 36 134 134 HOH TIP A . G 4 HOH 37 135 135 HOH TIP A . G 4 HOH 38 138 138 HOH TIP A . G 4 HOH 39 139 139 HOH TIP A . G 4 HOH 40 140 140 HOH TIP A . G 4 HOH 41 141 141 HOH TIP A . G 4 HOH 42 142 142 HOH TIP A . G 4 HOH 43 146 146 HOH TIP A . G 4 HOH 44 147 147 HOH TIP A . G 4 HOH 45 149 149 HOH TIP A . G 4 HOH 46 150 150 HOH TIP A . G 4 HOH 47 152 152 HOH TIP A . G 4 HOH 48 153 153 HOH TIP A . G 4 HOH 49 154 154 HOH TIP A . G 4 HOH 50 155 155 HOH TIP A . G 4 HOH 51 156 156 HOH TIP A . G 4 HOH 52 157 157 HOH TIP A . G 4 HOH 53 158 158 HOH TIP A . G 4 HOH 54 159 159 HOH TIP A . G 4 HOH 55 160 160 HOH TIP A . G 4 HOH 56 162 162 HOH TIP A . G 4 HOH 57 165 165 HOH TIP A . G 4 HOH 58 166 166 HOH TIP A . G 4 HOH 59 168 168 HOH TIP A . G 4 HOH 60 169 169 HOH TIP A . G 4 HOH 61 173 173 HOH TIP A . G 4 HOH 62 174 174 HOH TIP A . G 4 HOH 63 177 177 HOH TIP A . G 4 HOH 64 179 179 HOH TIP A . G 4 HOH 65 182 182 HOH TIP A . G 4 HOH 66 184 184 HOH TIP A . G 4 HOH 67 186 186 HOH TIP A . G 4 HOH 68 188 188 HOH TIP A . G 4 HOH 69 190 190 HOH TIP A . G 4 HOH 70 196 196 HOH TIP A . G 4 HOH 71 197 197 HOH TIP A . G 4 HOH 72 198 198 HOH TIP A . G 4 HOH 73 201 201 HOH TIP A . G 4 HOH 74 203 203 HOH TIP A . G 4 HOH 75 208 208 HOH TIP A . G 4 HOH 76 222 222 HOH TIP A . G 4 HOH 77 223 223 HOH TIP A . G 4 HOH 78 227 227 HOH TIP A . G 4 HOH 79 232 232 HOH TIP A . G 4 HOH 80 235 235 HOH TIP A . G 4 HOH 81 243 243 HOH TIP A . G 4 HOH 82 247 247 HOH TIP A . G 4 HOH 83 249 249 HOH TIP A . G 4 HOH 84 252 252 HOH TIP A . G 4 HOH 85 259 259 HOH TIP A . G 4 HOH 86 265 265 HOH TIP A . G 4 HOH 87 266 266 HOH TIP A . G 4 HOH 88 267 267 HOH TIP A . G 4 HOH 89 268 268 HOH TIP A . G 4 HOH 90 271 271 HOH TIP A . G 4 HOH 91 272 272 HOH TIP A . G 4 HOH 92 273 273 HOH TIP A . G 4 HOH 93 274 274 HOH TIP A . G 4 HOH 94 277 277 HOH TIP A . G 4 HOH 95 1126 1126 HOH TIP A . G 4 HOH 96 1157 1157 HOH TIP A . G 4 HOH 97 1159 1159 HOH TIP A . G 4 HOH 98 1167 1167 HOH TIP A . G 4 HOH 99 1183 1183 HOH TIP A . G 4 HOH 100 1186 1186 HOH TIP A . G 4 HOH 101 1208 1208 HOH TIP A . H 4 HOH 1 27 27 HOH TIP B . H 4 HOH 2 29 29 HOH TIP B . H 4 HOH 3 30 30 HOH TIP B . H 4 HOH 4 31 31 HOH TIP B . H 4 HOH 5 33 33 HOH TIP B . H 4 HOH 6 34 34 HOH TIP B . H 4 HOH 7 35 35 HOH TIP B . H 4 HOH 8 36 36 HOH TIP B . H 4 HOH 9 37 37 HOH TIP B . H 4 HOH 10 41 41 HOH TIP B . H 4 HOH 11 42 42 HOH TIP B . H 4 HOH 12 44 44 HOH TIP B . H 4 HOH 13 46 46 HOH TIP B . H 4 HOH 14 48 48 HOH TIP B . H 4 HOH 15 50 50 HOH TIP B . H 4 HOH 16 55 55 HOH TIP B . H 4 HOH 17 56 56 HOH TIP B . H 4 HOH 18 66 66 HOH TIP B . H 4 HOH 19 69 69 HOH TIP B . H 4 HOH 20 70 70 HOH TIP B . H 4 HOH 21 72 72 HOH TIP B . H 4 HOH 22 73 73 HOH TIP B . H 4 HOH 23 74 74 HOH TIP B . H 4 HOH 24 75 75 HOH TIP B . H 4 HOH 25 79 79 HOH TIP B . H 4 HOH 26 104 104 HOH TIP B . H 4 HOH 27 105 105 HOH TIP B . H 4 HOH 28 109 109 HOH TIP B . H 4 HOH 29 111 111 HOH TIP B . H 4 HOH 30 115 115 HOH TIP B . H 4 HOH 31 116 116 HOH TIP B . H 4 HOH 32 119 119 HOH TIP B . H 4 HOH 33 121 121 HOH TIP B . H 4 HOH 34 127 127 HOH TIP B . H 4 HOH 35 128 128 HOH TIP B . H 4 HOH 36 129 129 HOH TIP B . H 4 HOH 37 130 130 HOH TIP B . H 4 HOH 38 131 131 HOH TIP B . H 4 HOH 39 132 132 HOH TIP B . H 4 HOH 40 136 136 HOH TIP B . H 4 HOH 41 137 137 HOH TIP B . H 4 HOH 42 143 143 HOH TIP B . H 4 HOH 43 144 144 HOH TIP B . H 4 HOH 44 145 145 HOH TIP B . H 4 HOH 45 148 148 HOH TIP B . H 4 HOH 46 151 151 HOH TIP B . H 4 HOH 47 161 161 HOH TIP B . H 4 HOH 48 163 163 HOH TIP B . H 4 HOH 49 164 164 HOH TIP B . H 4 HOH 50 167 167 HOH TIP B . H 4 HOH 51 170 170 HOH TIP B . H 4 HOH 52 172 172 HOH TIP B . H 4 HOH 53 175 175 HOH TIP B . H 4 HOH 54 176 176 HOH TIP B . H 4 HOH 55 181 181 HOH TIP B . H 4 HOH 56 183 183 HOH TIP B . H 4 HOH 57 187 187 HOH TIP B . H 4 HOH 58 191 191 HOH TIP B . H 4 HOH 59 192 192 HOH TIP B . H 4 HOH 60 193 193 HOH TIP B . H 4 HOH 61 195 195 HOH TIP B . H 4 HOH 62 199 199 HOH TIP B . H 4 HOH 63 202 202 HOH TIP B . H 4 HOH 64 205 205 HOH TIP B . H 4 HOH 65 207 207 HOH TIP B . H 4 HOH 66 209 209 HOH TIP B . H 4 HOH 67 211 211 HOH TIP B . H 4 HOH 68 213 213 HOH TIP B . H 4 HOH 69 221 221 HOH TIP B . H 4 HOH 70 228 228 HOH TIP B . H 4 HOH 71 230 230 HOH TIP B . H 4 HOH 72 237 237 HOH TIP B . H 4 HOH 73 242 242 HOH TIP B . H 4 HOH 74 245 245 HOH TIP B . H 4 HOH 75 246 246 HOH TIP B . H 4 HOH 76 257 257 HOH TIP B . H 4 HOH 77 263 263 HOH TIP B . H 4 HOH 78 264 264 HOH TIP B . H 4 HOH 79 270 270 HOH TIP B . H 4 HOH 80 278 278 HOH TIP B . H 4 HOH 81 279 279 HOH TIP B . H 4 HOH 82 284 284 HOH TIP B . H 4 HOH 83 285 285 HOH TIP B . H 4 HOH 84 286 286 HOH TIP B . H 4 HOH 85 1153 1153 HOH TIP B . H 4 HOH 86 1174 1174 HOH TIP B . H 4 HOH 87 1212 1212 HOH TIP B . H 4 HOH 88 1214 1214 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 460D _cell.length_a 25.111 _cell.length_b 39.731 _cell.length_c 65.829 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 460D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 460D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.84 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 275 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details ;SITTING DROPLETS CONTAINING 1.2 MM OLIGONUCLEOTIDE, 20 MM RB CACODYLATE PH 6.9, 25 MM MAGNESIUM ACETATE, 3.2 MM SPERMINE TETRACLORIDE AGAINST RESERVOIR OF 40% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 275K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'RB CACODYLATE' ? ? ? 1 2 1 'ONUCLEMAGNESIUM ACETATE' ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-11-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.10012 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 1.10012 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 460D _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.2 _reflns.number_obs 20661 _reflns.number_all 20661 _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.0680000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.24 _reflns_shell.percent_possible_all 93.3 _reflns_shell.Rmerge_I_obs 0.1150000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 460D _refine.ls_number_reflns_obs 20661 _refine.ls_number_reflns_all 20661 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.2 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs 0.1790000 _refine.ls_R_factor_all 0.1790000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 508 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 701 _refine_hist.d_res_high 1.2 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 460D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 460D _struct.title ;A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 460D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DODECAMER DUPLEX, TYPE 1 RB+ FORM CRYSTAL, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 460D _struct_ref.pdbx_db_accession 460D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 460D A 1 ? 12 ? 460D 1 ? 12 ? 1 12 2 1 460D B 1 ? 12 ? 460D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TAF 7 P ? ? A DA 6 A TAF 7 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale one ? A TAF 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A TAF 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale3 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TAF 7 P ? ? B DA 18 B TAF 19 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale4 covale one ? B TAF 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B TAF 19 B DT 20 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? A TAF 7 O2 ? ? ? 1_555 D RB . RB ? ? A TAF 7 B RB 110 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc2 metalc ? ? A DT 8 "O4'" ? ? ? 1_555 D RB . RB ? ? A DT 8 B RB 110 1_555 ? ? ? ? ? ? ? 3.514 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 26 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 28 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 27 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 29 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 30 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 31 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc9 metalc ? ? G HOH . O ? ? ? 4_456 F MG . MG ? ? A HOH 39 B MG 38 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc10 metalc ? ? G HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 40 B MG 38 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc11 metalc ? ? G HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 43 B MG 38 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc12 metalc ? ? G HOH . O ? ? ? 1_555 D RB . RB ? ? A HOH 265 B RB 110 1_555 ? ? ? ? ? ? ? 3.292 ? ? metalc13 metalc ? ? B TAF 7 OP1 ? ? ? 3_645 E MG . MG ? ? B TAF 19 B MG 32 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc14 metalc ? ? B TAF 7 O2 ? ? ? 1_555 D RB . RB ? ? B TAF 19 B RB 110 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc15 metalc ? ? B DT 8 "O4'" ? ? ? 1_555 D RB . RB ? ? B DT 20 B RB 110 1_555 ? ? ? ? ? ? ? 3.317 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 33 1_555 ? ? ? ? ? ? ? 1.812 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 34 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 35 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 36 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 37 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 41 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 42 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 44 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc24 metalc ? ? D RB . RB ? ? ? 1_555 H HOH . O ? ? B RB 110 B HOH 131 1_555 ? ? ? ? ? ? ? 2.900 ? ? metalc25 metalc ? ? D RB . RB ? ? ? 1_555 H HOH . O ? ? B RB 110 B HOH 145 1_555 ? ? ? ? ? ? ? 2.840 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TAF 7 N3 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TAF 7 O4 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TAF 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TAF 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 "O4'" ? A DT 8 ? A DT 8 ? 1_555 64.9 ? 2 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? G HOH . ? A HOH 265 ? 1_555 137.8 ? 3 "O4'" ? A DT 8 ? A DT 8 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? G HOH . ? A HOH 265 ? 1_555 75.5 ? 4 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O2 ? B TAF 7 ? B TAF 19 ? 1_555 79.9 ? 5 "O4'" ? A DT 8 ? A DT 8 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O2 ? B TAF 7 ? B TAF 19 ? 1_555 135.5 ? 6 O ? G HOH . ? A HOH 265 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O2 ? B TAF 7 ? B TAF 19 ? 1_555 142.0 ? 7 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 "O4'" ? B DT 8 ? B DT 20 ? 1_555 136.1 ? 8 "O4'" ? A DT 8 ? A DT 8 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 "O4'" ? B DT 8 ? B DT 20 ? 1_555 157.7 ? 9 O ? G HOH . ? A HOH 265 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 "O4'" ? B DT 8 ? B DT 20 ? 1_555 82.2 ? 10 O2 ? B TAF 7 ? B TAF 19 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 "O4'" ? B DT 8 ? B DT 20 ? 1_555 65.4 ? 11 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 131 ? 1_555 113.5 ? 12 "O4'" ? A DT 8 ? A DT 8 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 131 ? 1_555 76.7 ? 13 O ? G HOH . ? A HOH 265 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 131 ? 1_555 68.6 ? 14 O2 ? B TAF 7 ? B TAF 19 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 131 ? 1_555 94.6 ? 15 "O4'" ? B DT 8 ? B DT 20 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 131 ? 1_555 96.0 ? 16 O2 ? A TAF 7 ? A TAF 7 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 98.9 ? 17 "O4'" ? A DT 8 ? A DT 8 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 95.1 ? 18 O ? G HOH . ? A HOH 265 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 69.6 ? 19 O2 ? B TAF 7 ? B TAF 19 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 117.5 ? 20 "O4'" ? B DT 8 ? B DT 20 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 76.1 ? 21 O ? H HOH . ? B HOH 131 ? 1_555 RB ? D RB . ? B RB 110 ? 1_555 O ? H HOH . ? B HOH 145 ? 1_555 138.1 ? 22 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 28 ? 1_555 90.8 ? 23 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 174.8 ? 24 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 86.4 ? 25 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 89.9 ? 26 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 173.0 ? 27 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 93.4 ? 28 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 95.4 ? 29 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 85.1 ? 30 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 88.8 ? 31 O ? H HOH . ? B HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 87.9 ? 32 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 90.0 ? 33 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 94.4 ? 34 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 85.8 ? 35 O ? H HOH . ? B HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 92.5 ? 36 O ? H HOH . ? B HOH 30 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 174.6 ? 37 O ? G HOH . ? A HOH 39 ? 4_456 MG ? F MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 40 ? 1_555 88.0 ? 38 O ? G HOH . ? A HOH 39 ? 4_456 MG ? F MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 43 ? 1_555 92.0 ? 39 O ? G HOH . ? A HOH 40 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 43 ? 1_555 96.6 ? 40 O ? G HOH . ? A HOH 39 ? 4_456 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 169.2 ? 41 O ? G HOH . ? A HOH 40 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 100.2 ? 42 O ? G HOH . ? A HOH 43 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 94.0 ? 43 O ? G HOH . ? A HOH 39 ? 4_456 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 99.4 ? 44 O ? G HOH . ? A HOH 40 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 172.5 ? 45 O ? G HOH . ? A HOH 43 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 83.8 ? 46 O ? H HOH . ? B HOH 41 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 72.3 ? 47 O ? G HOH . ? A HOH 39 ? 4_456 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 44 ? 1_555 89.1 ? 48 O ? G HOH . ? A HOH 40 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 44 ? 1_555 97.6 ? 49 O ? G HOH . ? A HOH 43 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 44 ? 1_555 165.7 ? 50 O ? H HOH . ? B HOH 41 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 44 ? 1_555 82.9 ? 51 O ? H HOH . ? B HOH 42 ? 1_555 MG ? F MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 44 ? 1_555 82.0 ? 52 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 33 ? 1_555 96.2 ? 53 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 172.7 ? 54 O ? H HOH . ? B HOH 33 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 87.6 ? 55 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 94.4 ? 56 O ? H HOH . ? B HOH 33 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 94.2 ? 57 O ? H HOH . ? B HOH 34 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 91.5 ? 58 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 85.3 ? 59 O ? H HOH . ? B HOH 33 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 174.6 ? 60 O ? H HOH . ? B HOH 34 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 90.3 ? 61 O ? H HOH . ? B HOH 35 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 90.8 ? 62 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 90.0 ? 63 O ? H HOH . ? B HOH 33 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 80.3 ? 64 O ? H HOH . ? B HOH 34 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 84.5 ? 65 O ? H HOH . ? B HOH 35 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 173.3 ? 66 O ? H HOH . ? B HOH 36 ? 1_555 MG ? E MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 94.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B RB 110 ? 6 'BINDING SITE FOR RESIDUE RB B 110' AC2 Software A MG 25 ? 6 'BINDING SITE FOR RESIDUE MG A 25' AC3 Software B MG 32 ? 6 'BINDING SITE FOR RESIDUE MG B 32' AC4 Software B MG 38 ? 6 'BINDING SITE FOR RESIDUE MG B 38' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TAF A 7 ? TAF A 7 . ? 1_555 ? 2 AC1 6 DT A 8 ? DT A 8 . ? 1_555 ? 3 AC1 6 TAF B 7 ? TAF B 19 . ? 1_555 ? 4 AC1 6 DT B 8 ? DT B 20 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 131 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 145 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 26 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 28 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 27 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 29 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH B 30 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH B 31 . ? 1_555 ? 13 AC3 6 TAF B 7 ? TAF B 19 . ? 3_645 ? 14 AC3 6 HOH H . ? HOH B 33 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH B 34 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH B 35 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH B 36 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH B 37 . ? 1_555 ? 19 AC4 6 HOH G . ? HOH A 39 . ? 4_456 ? 20 AC4 6 HOH G . ? HOH A 40 . ? 1_555 ? 21 AC4 6 HOH G . ? HOH A 43 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH B 41 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH B 42 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH B 44 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 101.23 108.00 -6.77 0.70 N 2 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 103.70 108.00 -4.30 0.70 N 3 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.33 108.30 2.03 0.30 N 4 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 103.67 108.00 -4.33 0.70 N 5 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.24 102.40 -5.16 0.80 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TAF 7 A TAF 7 ? DT ? 2 B TAF 7 B TAF 19 ? DT ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 RB RB RB N N 148 TAF P P N N 149 TAF OP1 O N N 150 TAF OP2 O N N 151 TAF OP3 O N N 152 TAF "O5'" O N N 153 TAF N1 N N N 154 TAF C6 C N N 155 TAF C2 C N N 156 TAF O2 O N N 157 TAF N3 N N N 158 TAF C4 C N N 159 TAF O4 O N N 160 TAF C5 C N N 161 TAF C5M C N N 162 TAF "F2'" F N N 163 TAF "C2'" C N S 164 TAF "C5'" C N N 165 TAF "C4'" C N R 166 TAF "O4'" O N N 167 TAF "C1'" C N R 168 TAF "C3'" C N R 169 TAF "O3'" O N N 170 TAF HOP1 H N N 171 TAF HOP2 H N N 172 TAF H6 H N N 173 TAF H3 H N N 174 TAF H71 H N N 175 TAF H72 H N N 176 TAF H73 H N N 177 TAF "H2'" H N N 178 TAF "H5'" H N N 179 TAF "H5''" H N N 180 TAF "H4'" H N N 181 TAF "H1'" H N N 182 TAF "H3'" H N N 183 TAF "HO'3" H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 TAF P OP1 sing N N 152 TAF P OP2 sing N N 153 TAF P OP3 doub N N 154 TAF P "O5'" sing N N 155 TAF OP1 HOP1 sing N N 156 TAF OP2 HOP2 sing N N 157 TAF "O5'" "C5'" sing N N 158 TAF N1 C6 sing N N 159 TAF N1 C2 sing N N 160 TAF N1 "C1'" sing N N 161 TAF C6 C5 doub N N 162 TAF C6 H6 sing N N 163 TAF C2 O2 doub N N 164 TAF C2 N3 sing N N 165 TAF N3 C4 sing N N 166 TAF N3 H3 sing N N 167 TAF C4 O4 doub N N 168 TAF C4 C5 sing N N 169 TAF C5 C5M sing N N 170 TAF C5M H71 sing N N 171 TAF C5M H72 sing N N 172 TAF C5M H73 sing N N 173 TAF "F2'" "C2'" sing N N 174 TAF "C2'" "C1'" sing N N 175 TAF "C2'" "C3'" sing N N 176 TAF "C2'" "H2'" sing N N 177 TAF "C5'" "C4'" sing N N 178 TAF "C5'" "H5'" sing N N 179 TAF "C5'" "H5''" sing N N 180 TAF "C4'" "O4'" sing N N 181 TAF "C4'" "C3'" sing N N 182 TAF "C4'" "H4'" sing N N 183 TAF "O4'" "C1'" sing N N 184 TAF "C1'" "H1'" sing N N 185 TAF "C3'" "O3'" sing N N 186 TAF "C3'" "H3'" sing N N 187 TAF "O3'" "HO'3" sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 460D 'double helix' 460D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.230 -0.158 0.097 5.264 -16.328 0.255 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.202 -0.140 0.257 4.373 -6.419 -3.309 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.137 -0.119 0.253 -1.930 -6.531 0.205 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.201 -0.096 0.063 13.960 -9.384 0.066 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.027 -0.094 -0.076 6.091 -15.345 0.731 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B TAF 7 1_555 0.034 -0.095 0.162 3.230 -17.730 4.908 6 A_DA6:TAF19_B A 6 ? B 19 ? 20 1 1 A TAF 7 1_555 B DA 6 1_555 -0.013 -0.092 0.177 -2.275 -18.480 4.391 7 A_TAF7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.081 -0.154 -0.019 -2.263 -14.280 2.249 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.255 -0.104 0.098 -13.544 -7.787 -0.867 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.090 -0.072 0.382 6.026 -7.642 3.716 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.066 -0.112 0.250 2.674 -16.089 -0.926 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.857 -0.134 -0.492 10.462 27.428 -3.812 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.302 0.053 3.309 -1.224 4.833 34.667 -0.649 0.316 3.295 8.059 2.040 35.012 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.693 0.511 3.498 0.289 -3.749 41.287 1.147 -0.946 3.445 -5.304 -0.409 41.451 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.369 0.669 3.076 2.693 9.495 25.749 -0.855 1.417 3.070 20.378 -5.780 27.546 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.029 -0.151 3.403 0.402 3.056 40.251 -0.576 0.088 3.382 4.433 -0.583 40.364 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B TAF 7 1_555 0.203 -0.481 3.241 -1.653 0.561 34.742 -0.889 -0.588 3.221 0.939 2.766 34.785 5 AA_DA5DA6:TAF19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B TAF 7 1_555 A TAF 7 1_555 B DA 6 1_555 -0.053 -0.757 3.319 -0.259 -1.548 30.199 -1.131 0.049 3.353 -2.969 0.496 30.238 6 AA_DA6TAF7:DA18TAF19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A TAF 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.091 -0.389 3.183 2.663 -1.741 35.420 -0.390 0.528 3.183 -2.854 -4.367 35.558 7 AA_TAF7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.168 -0.269 3.477 -0.293 -1.569 43.088 -0.202 0.198 3.485 -2.136 0.399 43.116 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.623 0.690 2.963 -3.733 2.969 26.456 0.794 -2.210 2.908 6.421 8.074 26.875 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.313 0.590 3.479 -2.940 -11.450 43.886 1.837 1.426 3.310 -14.999 3.852 45.374 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.277 0.368 3.647 3.917 -14.450 31.294 3.111 -1.472 3.298 -25.069 -6.796 34.610 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 460D _atom_sites.fract_transf_matrix[1][1] 0.039823 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015191 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F MG N O P RB # loop_