data_463D # _entry.id 463D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 463D pdb_0000463d 10.2210/pdb463d/pdb RCSB BD0014 ? ? WWPDB D_1000179242 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-08 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_symmetry' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_symmetry' 41 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 463D _pdbx_database_status.recvd_initial_deposition_date 1999-03-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, J.' 1 'Subirana, J.A.' 2 # _citation.id primary _citation.title 'Structure of d(CGCGAATTCGCG) in the presence of Ca(2+) ions.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 274 _citation.page_first 24749 _citation.page_last 24752 _citation.year 1999 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10455145 _citation.pdbx_database_id_DOI 10.1074/jbc.274.35.24749 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, J.' 1 ? primary 'Subirana, J.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 ? ? ? A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 ? ? ? B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 101 101 CA CA A . D 2 CA 1 103 103 CA CA A . E 2 CA 1 102 102 CA CA B . F 2 CA 1 104 104 CA CA B . G 3 HOH 1 112 112 HOH HOH A . G 3 HOH 2 113 113 HOH HOH A . G 3 HOH 3 115 115 HOH HOH A . G 3 HOH 4 116 116 HOH HOH A . G 3 HOH 5 117 117 HOH HOH A . G 3 HOH 6 119 119 HOH HOH A . G 3 HOH 7 122 122 HOH HOH A . G 3 HOH 8 125 125 HOH HOH A . G 3 HOH 9 130 130 HOH HOH A . G 3 HOH 10 131 131 HOH HOH A . G 3 HOH 11 132 132 HOH HOH A . G 3 HOH 12 133 133 HOH HOH A . G 3 HOH 13 134 134 HOH HOH A . G 3 HOH 14 135 135 HOH HOH A . G 3 HOH 15 136 136 HOH HOH A . G 3 HOH 16 138 138 HOH HOH A . G 3 HOH 17 140 140 HOH HOH A . G 3 HOH 18 141 141 HOH HOH A . G 3 HOH 19 144 144 HOH HOH A . G 3 HOH 20 145 145 HOH HOH A . G 3 HOH 21 146 146 HOH HOH A . G 3 HOH 22 147 147 HOH HOH A . G 3 HOH 23 148 148 HOH HOH A . G 3 HOH 24 150 150 HOH HOH A . G 3 HOH 25 151 151 HOH HOH A . G 3 HOH 26 152 152 HOH HOH A . G 3 HOH 27 154 154 HOH HOH A . G 3 HOH 28 156 156 HOH HOH A . G 3 HOH 29 157 157 HOH HOH A . G 3 HOH 30 158 158 HOH HOH A . G 3 HOH 31 159 159 HOH HOH A . G 3 HOH 32 160 160 HOH HOH A . G 3 HOH 33 161 161 HOH HOH A . G 3 HOH 34 171 171 HOH HOH A . G 3 HOH 35 176 176 HOH HOH A . G 3 HOH 36 178 178 HOH HOH A . G 3 HOH 37 179 179 HOH HOH A . G 3 HOH 38 180 180 HOH HOH A . G 3 HOH 39 183 183 HOH HOH A . G 3 HOH 40 184 184 HOH HOH A . G 3 HOH 41 185 185 HOH HOH A . G 3 HOH 42 186 186 HOH HOH A . G 3 HOH 43 188 188 HOH HOH A . G 3 HOH 44 189 189 HOH HOH A . G 3 HOH 45 190 190 HOH HOH A . G 3 HOH 46 191 191 HOH HOH A . G 3 HOH 47 192 192 HOH HOH A . G 3 HOH 48 193 193 HOH HOH A . G 3 HOH 49 194 194 HOH HOH A . G 3 HOH 50 195 195 HOH HOH A . G 3 HOH 51 199 199 HOH HOH A . G 3 HOH 52 201 201 HOH HOH A . G 3 HOH 53 207 207 HOH HOH A . G 3 HOH 54 209 209 HOH HOH A . G 3 HOH 55 210 210 HOH HOH A . G 3 HOH 56 214 214 HOH HOH A . G 3 HOH 57 215 215 HOH HOH A . G 3 HOH 58 216 216 HOH HOH A . G 3 HOH 59 220 220 HOH HOH A . G 3 HOH 60 222 222 HOH HOH A . G 3 HOH 61 223 223 HOH HOH A . G 3 HOH 62 225 225 HOH HOH A . G 3 HOH 63 226 226 HOH HOH A . G 3 HOH 64 228 228 HOH HOH A . G 3 HOH 65 230 230 HOH HOH A . G 3 HOH 66 232 232 HOH HOH A . G 3 HOH 67 233 233 HOH HOH A . G 3 HOH 68 235 235 HOH HOH A . G 3 HOH 69 236 236 HOH HOH A . G 3 HOH 70 239 239 HOH HOH A . G 3 HOH 71 240 240 HOH HOH A . G 3 HOH 72 242 242 HOH HOH A . G 3 HOH 73 244 244 HOH HOH A . G 3 HOH 74 246 246 HOH HOH A . G 3 HOH 75 250 250 HOH HOH A . G 3 HOH 76 252 252 HOH HOH A . H 3 HOH 1 111 111 HOH HOH B . H 3 HOH 2 114 114 HOH HOH B . H 3 HOH 3 118 118 HOH HOH B . H 3 HOH 4 120 120 HOH HOH B . H 3 HOH 5 121 121 HOH HOH B . H 3 HOH 6 123 123 HOH HOH B . H 3 HOH 7 124 124 HOH HOH B . H 3 HOH 8 126 126 HOH HOH B . H 3 HOH 9 127 127 HOH HOH B . H 3 HOH 10 128 128 HOH HOH B . H 3 HOH 11 129 129 HOH HOH B . H 3 HOH 12 137 137 HOH HOH B . H 3 HOH 13 139 139 HOH HOH B . H 3 HOH 14 142 142 HOH HOH B . H 3 HOH 15 143 143 HOH HOH B . H 3 HOH 16 149 149 HOH HOH B . H 3 HOH 17 153 153 HOH HOH B . H 3 HOH 18 155 155 HOH HOH B . H 3 HOH 19 162 162 HOH HOH B . H 3 HOH 20 163 163 HOH HOH B . H 3 HOH 21 164 164 HOH HOH B . H 3 HOH 22 165 165 HOH HOH B . H 3 HOH 23 166 166 HOH HOH B . H 3 HOH 24 167 167 HOH HOH B . H 3 HOH 25 168 168 HOH HOH B . H 3 HOH 26 169 169 HOH HOH B . H 3 HOH 27 170 170 HOH HOH B . H 3 HOH 28 172 172 HOH HOH B . H 3 HOH 29 173 173 HOH HOH B . H 3 HOH 30 174 174 HOH HOH B . H 3 HOH 31 175 175 HOH HOH B . H 3 HOH 32 177 177 HOH HOH B . H 3 HOH 33 181 181 HOH HOH B . H 3 HOH 34 182 182 HOH HOH B . H 3 HOH 35 187 187 HOH HOH B . H 3 HOH 36 196 196 HOH HOH B . H 3 HOH 37 197 197 HOH HOH B . H 3 HOH 38 198 198 HOH HOH B . H 3 HOH 39 200 200 HOH HOH B . H 3 HOH 40 202 202 HOH HOH B . H 3 HOH 41 203 203 HOH HOH B . H 3 HOH 42 204 204 HOH HOH B . H 3 HOH 43 205 205 HOH HOH B . H 3 HOH 44 206 206 HOH HOH B . H 3 HOH 45 208 208 HOH HOH B . H 3 HOH 46 211 211 HOH HOH B . H 3 HOH 47 212 212 HOH HOH B . H 3 HOH 48 213 213 HOH HOH B . H 3 HOH 49 217 217 HOH HOH B . H 3 HOH 50 218 218 HOH HOH B . H 3 HOH 51 219 219 HOH HOH B . H 3 HOH 52 221 221 HOH HOH B . H 3 HOH 53 224 224 HOH HOH B . H 3 HOH 54 227 227 HOH HOH B . H 3 HOH 55 229 229 HOH HOH B . H 3 HOH 56 231 231 HOH HOH B . H 3 HOH 57 234 234 HOH HOH B . H 3 HOH 58 237 237 HOH HOH B . H 3 HOH 59 238 238 HOH HOH B . H 3 HOH 60 241 241 HOH HOH B . H 3 HOH 61 243 243 HOH HOH B . H 3 HOH 62 245 245 HOH HOH B . H 3 HOH 63 247 247 HOH HOH B . H 3 HOH 64 248 248 HOH HOH B . H 3 HOH 65 249 249 HOH HOH B . H 3 HOH 66 251 251 HOH HOH B . H 3 HOH 67 253 253 HOH HOH B . H 3 HOH 68 254 254 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 463D _cell.length_a 41.117 _cell.length_b 41.117 _cell.length_c 99.912 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 463D _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting rhombohedral _symmetry.Int_Tables_number 146 # _exptl.entry_id 463D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;CRYSTALLIZED FROM SOLUTION OF OLIGONUCLEOTIDE, CACL2, MPD, AND CACODYLIC ACID IN A HANGING DROP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 CACL2 ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'CACODYLIC ACID' ? ? ? 1 4 2 CACL2 ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'CACODYLIC ACID' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-08-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9076 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.9076 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 463D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.45 _reflns.number_obs 11038 _reflns.number_all 11038 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.0530000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.51 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.3370000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 463D _refine.ls_number_reflns_obs 11005 _refine.ls_number_reflns_all 11005 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.2172000 _refine.ls_R_factor_all 0.2189000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2568000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1123 _refine.ls_number_parameters 2545 _refine.ls_number_restraints 10099 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 463D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen 0. _refine_analyze.occupancy_sum_non_hydrogen 595. _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 454 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 602 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 3.20 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 463D _pdbx_refine.R_factor_all_no_cutoff 0.2189000 _pdbx_refine.R_factor_obs_no_cutoff 0.2172000 _pdbx_refine.free_R_factor_no_cutoff 0.2568000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.2 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1123 _pdbx_refine.R_factor_all_4sig_cutoff 0.2114000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.2098000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2468000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 866 _pdbx_refine.number_reflns_obs_4sig_cutoff 8572 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 463D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 463D _struct.title 'CALCIUM FORM OF D(CGCGAATTCGCG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 463D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'CA2+ BINDING, DICKERSON-DREW DODECAMER, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 463D _struct_ref.pdbx_db_accession 463D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 463D A 1 ? 12 ? 463D 1 ? 12 ? 1 12 2 1 463D B 1 ? 12 ? 463D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 5 OP1 ? ? ? 1_555 D CA . CA ? ? A DA 5 A CA 103 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc2 metalc ? ? A DA 5 OP1 ? ? ? 2_555 D CA . CA ? ? A DA 5 A CA 103 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc3 metalc ? ? A DA 5 OP1 ? ? ? 3_555 D CA . CA ? ? A DA 5 A CA 103 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc4 metalc ? ? A DG 12 O6 ? ? ? 4_445 F CA . CA ? ? A DG 12 B CA 104 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc5 metalc ? ? A DG 12 OP1 ? ? ? 6_455 F CA . CA ? ? A DG 12 B CA 104 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 112 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 113 1_555 ? ? ? ? ? ? ? 2.420 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 115 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 116 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 101 A HOH 117 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 101 B HOH 111 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 101 B HOH 114 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 103 A HOH 125 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 103 A HOH 125 2_555 ? ? ? ? ? ? ? 2.369 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 103 A HOH 125 3_555 ? ? ? ? ? ? ? 2.369 ? ? metalc16 metalc ? ? G HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 119 B CA 102 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc17 metalc ? ? G HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 122 B CA 102 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc18 metalc ? ? B DG 12 OP1 ? ? ? 1_555 F CA . CA ? ? B DG 24 B CA 104 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 102 B HOH 118 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc20 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 102 B HOH 120 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc21 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 102 B HOH 121 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 102 B HOH 123 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 102 B HOH 124 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 104 B HOH 126 1_555 ? ? ? ? ? ? ? 2.196 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 2_555 93.9 ? 2 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 3_555 93.9 ? 3 OP1 ? A DA 5 ? A DA 5 ? 2_555 CA ? D CA . ? A CA 103 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 3_555 93.9 ? 4 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 80.9 ? 5 OP1 ? A DA 5 ? A DA 5 ? 2_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 169.4 ? 6 OP1 ? A DA 5 ? A DA 5 ? 3_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 95.7 ? 7 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 2_555 95.7 ? 8 OP1 ? A DA 5 ? A DA 5 ? 2_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 2_555 80.9 ? 9 OP1 ? A DA 5 ? A DA 5 ? 3_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 2_555 169.4 ? 10 O ? G HOH . ? A HOH 125 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 2_555 90.3 ? 11 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 3_555 169.4 ? 12 OP1 ? A DA 5 ? A DA 5 ? 2_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 3_555 95.7 ? 13 OP1 ? A DA 5 ? A DA 5 ? 3_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 3_555 80.9 ? 14 O ? G HOH . ? A HOH 125 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 3_555 90.3 ? 15 O ? G HOH . ? A HOH 125 ? 2_555 CA ? D CA . ? A CA 103 ? 1_555 O ? G HOH . ? A HOH 125 ? 3_555 90.3 ? 16 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? F CA . ? B CA 104 ? 1_555 OP1 ? A DG 12 ? A DG 12 ? 6_455 90.4 ? 17 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? F CA . ? B CA 104 ? 1_555 OP1 ? B DG 12 ? B DG 24 ? 1_555 151.5 ? 18 OP1 ? A DG 12 ? A DG 12 ? 6_455 CA ? F CA . ? B CA 104 ? 1_555 OP1 ? B DG 12 ? B DG 24 ? 1_555 95.6 ? 19 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? F CA . ? B CA 104 ? 1_555 O ? H HOH . ? B HOH 126 ? 1_555 110.8 ? 20 OP1 ? A DG 12 ? A DG 12 ? 6_455 CA ? F CA . ? B CA 104 ? 1_555 O ? H HOH . ? B HOH 126 ? 1_555 95.0 ? 21 OP1 ? B DG 12 ? B DG 24 ? 1_555 CA ? F CA . ? B CA 104 ? 1_555 O ? H HOH . ? B HOH 126 ? 1_555 96.4 ? 22 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 75.0 ? 23 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 115 ? 1_555 142.3 ? 24 O ? G HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 115 ? 1_555 68.0 ? 25 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 116 ? 1_555 146.7 ? 26 O ? G HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 116 ? 1_555 138.0 ? 27 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 116 ? 1_555 70.1 ? 28 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 86.0 ? 29 O ? G HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 88.5 ? 30 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 85.5 ? 31 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 90.4 ? 32 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 111 ? 1_555 93.8 ? 33 O ? G HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 111 ? 1_555 90.9 ? 34 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 111 ? 1_555 94.2 ? 35 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 111 ? 1_555 90.0 ? 36 O ? G HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 111 ? 1_555 179.4 ? 37 O ? G HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 73.9 ? 38 O ? G HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 146.0 ? 39 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 143.8 ? 40 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 74.7 ? 41 O ? G HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 103.0 ? 42 O ? H HOH . ? B HOH 111 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 77.6 ? 43 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 93.4 ? 44 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 99.6 ? 45 O ? G HOH . ? A HOH 122 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 162.1 ? 46 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 56.8 ? 47 O ? G HOH . ? A HOH 122 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 92.2 ? 48 O ? H HOH . ? B HOH 118 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 120 ? 1_555 84.8 ? 49 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 124.5 ? 50 O ? G HOH . ? A HOH 122 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 57.0 ? 51 O ? H HOH . ? B HOH 118 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 122.4 ? 52 O ? H HOH . ? B HOH 120 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 148.6 ? 53 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 81.4 ? 54 O ? G HOH . ? A HOH 122 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 89.9 ? 55 O ? H HOH . ? B HOH 118 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 104.1 ? 56 O ? H HOH . ? B HOH 120 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 138.2 ? 57 O ? H HOH . ? B HOH 121 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 56.1 ? 58 O ? G HOH . ? A HOH 119 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 130.2 ? 59 O ? G HOH . ? A HOH 122 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 79.8 ? 60 O ? H HOH . ? B HOH 118 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 82.3 ? 61 O ? H HOH . ? B HOH 120 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 74.1 ? 62 O ? H HOH . ? B HOH 121 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 92.7 ? 63 O ? H HOH . ? B HOH 123 ? 1_555 CA ? E CA . ? B CA 102 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 146.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 7 'BINDING SITE FOR RESIDUE CA A 101' AC2 Software B CA 102 ? 7 'BINDING SITE FOR RESIDUE CA B 102' AC3 Software A CA 103 ? 6 'BINDING SITE FOR RESIDUE CA A 103' AC4 Software B CA 104 ? 4 'BINDING SITE FOR RESIDUE CA B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH G . ? HOH A 112 . ? 1_555 ? 2 AC1 7 HOH G . ? HOH A 113 . ? 1_555 ? 3 AC1 7 HOH G . ? HOH A 115 . ? 1_555 ? 4 AC1 7 HOH G . ? HOH A 116 . ? 1_555 ? 5 AC1 7 HOH G . ? HOH A 117 . ? 1_555 ? 6 AC1 7 HOH H . ? HOH B 111 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH B 114 . ? 1_555 ? 8 AC2 7 HOH G . ? HOH A 119 . ? 1_555 ? 9 AC2 7 HOH G . ? HOH A 122 . ? 1_555 ? 10 AC2 7 HOH H . ? HOH B 118 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH B 120 . ? 1_555 ? 12 AC2 7 HOH H . ? HOH B 121 . ? 1_555 ? 13 AC2 7 HOH H . ? HOH B 123 . ? 1_555 ? 14 AC2 7 HOH H . ? HOH B 124 . ? 1_555 ? 15 AC3 6 DA A 5 ? DA A 5 . ? 2_555 ? 16 AC3 6 DA A 5 ? DA A 5 . ? 1_555 ? 17 AC3 6 DA A 5 ? DA A 5 . ? 3_555 ? 18 AC3 6 HOH G . ? HOH A 125 . ? 2_555 ? 19 AC3 6 HOH G . ? HOH A 125 . ? 3_555 ? 20 AC3 6 HOH G . ? HOH A 125 . ? 1_555 ? 21 AC4 4 DG A 12 ? DG A 12 . ? 6_455 ? 22 AC4 4 DG A 12 ? DG A 12 . ? 4_445 ? 23 AC4 4 DG B 12 ? DG B 24 . ? 1_555 ? 24 AC4 4 HOH H . ? HOH B 126 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 122 ? ? O B HOH 121 ? ? 2.08 2 1 O B HOH 121 ? ? O B HOH 123 ? ? 2.12 3 1 O A HOH 119 ? ? O B HOH 120 ? ? 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.659 1.593 0.066 0.010 N 2 1 "C1'" A DC 3 ? ? N1 A DC 3 ? ? 1.374 1.468 -0.094 0.014 N 3 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.667 1.593 0.074 0.010 N 4 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.655 1.593 0.062 0.010 N 5 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.560 1.512 0.048 0.007 N 6 1 "C1'" A DC 9 ? ? N1 A DC 9 ? ? 1.373 1.468 -0.095 0.014 N 7 1 "C1'" A DG 10 ? ? N9 A DG 10 ? ? 1.375 1.468 -0.093 0.014 N 8 1 "C1'" A DC 11 ? ? N1 A DC 11 ? ? 1.364 1.468 -0.104 0.014 N 9 1 P B DG 14 ? ? "O5'" B DG 14 ? ? 1.659 1.593 0.066 0.010 N 10 1 "C1'" B DC 15 ? ? N1 B DC 15 ? ? 1.361 1.468 -0.107 0.014 N 11 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? 1.492 1.420 0.072 0.011 N 12 1 "C1'" B DC 21 ? ? N1 B DC 21 ? ? 1.354 1.468 -0.114 0.014 N 13 1 "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 1.580 1.519 0.061 0.010 N 14 1 "C1'" B DG 22 ? ? N9 B DG 22 ? ? 1.378 1.468 -0.090 0.014 N 15 1 "C1'" B DC 23 ? ? N1 B DC 23 ? ? 1.364 1.468 -0.104 0.014 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 115.73 110.30 5.43 0.70 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 99.77 105.90 -6.13 0.80 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 103.24 108.00 -4.76 0.70 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 130.85 119.70 11.15 1.20 Y 5 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 130.62 119.60 11.02 1.50 N 6 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 100.32 104.50 -4.18 0.40 N 7 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 109.92 102.50 7.42 1.20 N 8 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 99.56 105.90 -6.34 0.80 N 9 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 130.35 119.70 10.65 1.20 Y 10 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 117.28 109.80 7.48 1.10 N 11 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.52 105.90 -5.38 0.80 N 12 1 "C1'" A DA 5 ? ? "O4'" A DA 5 ? ? "C4'" A DA 5 ? ? 115.16 110.30 4.86 0.70 N 13 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 99.94 105.90 -5.96 0.80 N 14 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.12 108.30 3.82 0.30 N 15 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 115.24 110.30 4.94 0.70 N 16 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 128.43 119.70 8.73 1.20 Y 17 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 100.08 105.90 -5.82 0.80 N 18 1 N1 A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 124.18 114.30 9.88 1.40 N 19 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.38 109.40 -6.02 0.80 N 20 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.34 105.90 -5.56 0.80 N 21 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 123.70 114.30 9.40 1.40 N 22 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 124.99 119.90 5.09 0.60 N 23 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 120.68 124.90 -4.22 0.70 N 24 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 129.28 119.70 9.58 1.20 Y 25 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 129.23 119.60 9.63 1.50 N 26 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 104.21 109.40 -5.19 0.80 N 27 1 P A DC 9 ? ? "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? 110.27 120.90 -10.63 1.60 N 28 1 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 110.34 102.50 7.84 1.20 N 29 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 100.79 105.90 -5.11 0.80 N 30 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 135.15 119.70 15.45 1.20 Y 31 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 97.98 105.90 -7.92 0.80 N 32 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.20 108.30 2.90 0.30 N 33 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 131.19 119.70 11.49 1.20 Y 34 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 99.25 105.90 -6.65 0.80 N 35 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 97.66 105.90 -8.24 0.80 N 36 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 100.67 104.50 -3.83 0.40 N 37 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? "O4'" B DG 14 ? ? 116.47 109.80 6.67 1.10 N 38 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 115.48 110.30 5.18 0.70 N 39 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 99.11 105.90 -6.79 0.80 N 40 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 103.18 120.90 -17.72 1.60 N 41 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 98.83 105.90 -7.07 0.80 N 42 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 99.25 105.90 -6.65 0.80 N 43 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.77 108.30 3.47 0.30 N 44 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 133.73 119.70 14.03 1.20 Y 45 1 "C1'" B DA 17 ? ? "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? 115.12 110.30 4.82 0.70 N 46 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 100.51 105.90 -5.39 0.80 N 47 1 OP1 B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 130.79 119.60 11.19 1.50 N 48 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 100.87 109.40 -8.53 0.80 N 49 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.47 105.90 -5.43 0.80 N 50 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 134.42 119.70 14.72 1.20 Y 51 1 "O5'" B DT 20 ? ? "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 103.66 109.40 -5.74 0.80 N 52 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 99.05 105.90 -6.85 0.80 N 53 1 N1 B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 125.68 114.30 11.38 1.40 N 54 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 103.43 108.00 -4.57 0.70 N 55 1 N3 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 125.45 119.90 5.55 0.60 N 56 1 C5 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 120.59 124.90 -4.31 0.70 N 57 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? ? 128.71 119.70 9.01 1.20 Y 58 1 OP1 B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 128.72 119.60 9.12 1.50 N 59 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 96.40 105.90 -9.50 0.80 N 60 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 98.12 105.90 -7.78 0.80 N 61 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.61 108.30 5.31 0.30 N 62 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 131.19 119.70 11.49 1.20 Y 63 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 104.59 109.40 -4.81 0.80 N 64 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? "C2'" B DC 23 ? ? 99.83 105.90 -6.07 0.80 N 65 1 "C3'" B DC 23 ? ? "O3'" B DC 23 ? ? P B DG 24 ? ? 128.37 119.70 8.67 1.20 Y 66 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 104.37 109.40 -5.03 0.80 N 67 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? "C2'" B DG 24 ? ? 98.64 105.90 -7.26 0.80 N 68 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.25 108.30 1.95 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 103 ? D CA . 2 1 B HOH 241 ? H HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 1 ? A DC 1 2 1 Y 1 B DC 13 ? B DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 463D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 11 1_555 -0.384 -0.059 -0.084 -16.188 -1.515 -1.213 1 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.201 -0.154 0.124 -7.839 3.746 0.357 2 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.143 -0.102 0.020 14.373 -11.198 0.914 3 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.193 -0.193 -0.190 6.805 -11.550 3.215 4 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.037 -0.081 -0.144 -0.545 -11.416 5.222 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.152 -0.158 0.134 0.834 -16.373 4.640 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.018 -0.153 -0.225 -2.585 -15.628 7.731 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.379 0.028 0.086 -12.676 -10.347 4.197 8 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.334 -0.006 0.047 0.747 2.372 -0.026 9 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.321 -0.058 0.069 15.113 0.730 2.447 10 A_DC11:DG14_B A 11 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.866 0.458 3.196 -0.998 -5.642 37.858 1.381 -1.442 3.075 -8.635 1.528 38.273 1 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.348 0.663 2.918 1.605 6.629 26.300 -0.115 1.112 2.967 14.266 -3.454 27.155 2 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.075 0.004 3.389 0.599 2.373 37.480 -0.315 0.198 3.382 3.689 -0.931 37.557 3 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.249 -0.037 3.339 -0.955 -0.598 39.645 0.017 0.253 3.344 -0.882 1.408 39.660 4 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.040 -0.433 3.254 -1.877 -4.808 36.928 -0.039 -0.312 3.277 -7.546 2.945 37.275 5 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.304 -0.129 3.227 3.732 0.315 36.310 -0.249 0.026 3.240 0.504 -5.969 36.496 6 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.203 0.084 3.508 -1.733 1.469 41.078 -0.051 -0.490 3.498 2.092 2.468 41.138 7 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.010 0.808 3.086 0.275 6.139 24.376 0.095 0.103 3.190 14.250 -0.638 25.127 8 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.728 0.343 3.094 -0.854 -4.954 34.961 1.256 1.081 3.035 -8.193 1.413 35.310 9 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? # _atom_sites.entry_id 463D _atom_sites.fract_transf_matrix[1][1] 0.024321 _atom_sites.fract_transf_matrix[1][2] 0.014042 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028083 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010009 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P # loop_