data_470D # _entry.id 470D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 470D pdb_0000470d 10.2210/pdb470d/pdb RCSB AR0017 ? ? WWPDB D_1000179247 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-12 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2013-01-16 6 'Structure model' 1 5 2013-02-27 7 'Structure model' 1 6 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Atomic model' 5 6 'Structure model' 'Atomic model' 6 7 'Structure model' 'Data collection' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' chem_comp_atom 2 7 'Structure model' chem_comp_bond 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_struct_conn_angle 5 7 'Structure model' struct_conn 6 7 'Structure model' struct_conn_type 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_database_2.pdbx_DOI' 2 7 'Structure model' '_database_2.pdbx_database_accession' 3 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 7 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 7 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 7 'Structure model' '_pdbx_struct_conn_angle.value' 11 7 'Structure model' '_struct_conn.conn_type_id' 12 7 'Structure model' '_struct_conn.id' 13 7 'Structure model' '_struct_conn.pdbx_dist_value' 14 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 7 'Structure model' '_struct_conn.ptnr1_symmetry' 23 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 7 'Structure model' '_struct_conn.ptnr2_symmetry' 31 7 'Structure model' '_struct_conn_type.id' 32 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 470D _pdbx_database_status.recvd_initial_deposition_date 1999-04-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teplova, M.' 1 'Minasov, G.' 2 'Tereshko, V.' 3 'Inamati, G.' 4 'Cook, P.D.' 5 'Egli, M.' 6 # _citation.id primary _citation.title ;Crystal structure and improved antisense properties of 2'-O-(2-methoxyethyl)-RNA. ; _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 6 _citation.page_first 535 _citation.page_last 539 _citation.year 1999 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10360355 _citation.pdbx_database_id_DOI 10.1038/9304 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teplova, M.' 1 ? primary 'Minasov, G.' 2 ? primary 'Tereshko, V.' 3 ? primary 'Inamati, G.B.' 4 ? primary 'Cook, P.D.' 5 ? primary 'Manoharan, M.' 6 ? primary 'Egli, M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(C43)P*(G48)P*(C43)P*(G48)P*(A44)P*(A44)P*(U36)P*(U36)P*(C43)P*(G48)P*(C43)P*(G48))-3') ; 4524.284 2 ? ? ? 'O2* OF EACH RIBOSE MODIFIED BY METHOXYETHYL' 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 123 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(C43)(G48)(C43)(G48)(A44)(A44)(U36)(U36)(C43)(G48)(C43)(G48)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C43 n 1 2 G48 n 1 3 C43 n 1 4 G48 n 1 5 A44 n 1 6 A44 n 1 7 U36 n 1 8 U36 n 1 9 C43 n 1 10 G48 n 1 11 C43 n 1 12 G48 n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A44 'RNA linking' n ;2'-O-METHYOXYETHYL-ADENOSINE 5'-MONOPHOSPHATE ; ? 'C13 H20 N5 O8 P' 405.300 C43 'RNA linking' n "2'-O-METHYOXYETHYL-CYTIDINE-5'-MONOPHOSPHATE" ? 'C12 H20 N3 O9 P' 381.276 G48 'RNA linking' n "2'-O-METHYOXYETHYL-GUANOSINE-5'-MONOPHOSPHATE" ? 'C13 H20 N5 O9 P' 421.300 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U36 'RNA linking' n "2'-O-METHYOXYETHYL-URIDINE-5'-MONOPHOSPHATE" ? 'C12 H19 N2 O10 P' 382.260 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C43 1 1 1 C43 +C A . n A 1 2 G48 2 2 2 G48 +G A . n A 1 3 C43 3 3 3 C43 +C A . n A 1 4 G48 4 4 4 G48 +G A . n A 1 5 A44 5 5 5 A44 +A A . n A 1 6 A44 6 6 6 A44 +A A . n A 1 7 U36 7 7 7 U36 +U A . n A 1 8 U36 8 8 8 U36 +U A . n A 1 9 C43 9 9 9 C43 +C A . n A 1 10 G48 10 10 10 G48 +G A . n A 1 11 C43 11 11 11 C43 +C A . n A 1 12 G48 12 12 12 G48 +G A . n B 1 1 C43 1 13 13 C43 +C B . n B 1 2 G48 2 14 14 G48 +G B . n B 1 3 C43 3 15 15 C43 +C B . n B 1 4 G48 4 16 16 G48 +G B . n B 1 5 A44 5 17 17 A44 +A B . n B 1 6 A44 6 18 18 A44 +A B . n B 1 7 U36 7 19 19 U36 +U B . n B 1 8 U36 8 20 20 U36 +U B . n B 1 9 C43 9 21 21 C43 +C B . n B 1 10 G48 10 22 22 G48 +G B . n B 1 11 C43 11 23 23 C43 +C B . n B 1 12 G48 12 24 24 G48 +G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 100 100 MG MG A . D 2 MG 1 106 106 MG MG A . E 3 HOH 1 101 101 HOH HOH A . E 3 HOH 2 105 105 HOH HOH A . E 3 HOH 3 107 107 HOH HOH A . E 3 HOH 4 108 108 HOH HOH A . E 3 HOH 5 109 109 HOH HOH A . E 3 HOH 6 110 110 HOH HOH A . E 3 HOH 7 111 111 HOH HOH A . E 3 HOH 8 112 112 HOH HOH A . E 3 HOH 9 113 113 HOH HOH A . E 3 HOH 10 114 114 HOH HOH A . E 3 HOH 11 116 116 HOH HOH A . E 3 HOH 12 117 117 HOH HOH A . E 3 HOH 13 122 122 HOH HOH A . E 3 HOH 14 124 124 HOH HOH A . E 3 HOH 15 125 125 HOH HOH A . E 3 HOH 16 128 128 HOH HOH A . E 3 HOH 17 129 129 HOH HOH A . E 3 HOH 18 131 131 HOH HOH A . E 3 HOH 19 132 132 HOH HOH A . E 3 HOH 20 133 133 HOH HOH A . E 3 HOH 21 134 134 HOH HOH A . E 3 HOH 22 136 136 HOH HOH A . E 3 HOH 23 137 137 HOH HOH A . E 3 HOH 24 139 139 HOH HOH A . E 3 HOH 25 141 141 HOH HOH A . E 3 HOH 26 142 142 HOH HOH A . E 3 HOH 27 143 143 HOH HOH A . E 3 HOH 28 144 144 HOH HOH A . E 3 HOH 29 147 147 HOH HOH A . E 3 HOH 30 148 148 HOH HOH A . E 3 HOH 31 149 149 HOH HOH A . E 3 HOH 32 151 151 HOH HOH A . E 3 HOH 33 152 152 HOH HOH A . E 3 HOH 34 155 155 HOH HOH A . E 3 HOH 35 160 160 HOH HOH A . E 3 HOH 36 162 162 HOH HOH A . E 3 HOH 37 165 165 HOH HOH A . E 3 HOH 38 167 167 HOH HOH A . E 3 HOH 39 168 168 HOH HOH A . E 3 HOH 40 169 169 HOH HOH A . E 3 HOH 41 170 170 HOH HOH A . E 3 HOH 42 171 171 HOH HOH A . E 3 HOH 43 173 173 HOH HOH A . E 3 HOH 44 175 175 HOH HOH A . E 3 HOH 45 176 176 HOH HOH A . E 3 HOH 46 179 179 HOH HOH A . E 3 HOH 47 183 183 HOH HOH A . E 3 HOH 48 185 185 HOH HOH A . E 3 HOH 49 186 186 HOH HOH A . E 3 HOH 50 187 187 HOH HOH A . E 3 HOH 51 189 189 HOH HOH A . E 3 HOH 52 191 191 HOH HOH A . E 3 HOH 53 192 192 HOH HOH A . E 3 HOH 54 194 194 HOH HOH A . E 3 HOH 55 195 195 HOH HOH A . E 3 HOH 56 196 196 HOH HOH A . E 3 HOH 57 197 197 HOH HOH A . E 3 HOH 58 198 198 HOH HOH A . E 3 HOH 59 199 199 HOH HOH A . E 3 HOH 60 201 201 HOH HOH A . E 3 HOH 61 202 202 HOH HOH A . E 3 HOH 62 203 203 HOH HOH A . E 3 HOH 63 207 207 HOH HOH A . E 3 HOH 64 209 209 HOH HOH A . E 3 HOH 65 211 211 HOH HOH A . E 3 HOH 66 215 215 HOH HOH A . E 3 HOH 67 216 216 HOH HOH A . E 3 HOH 68 218 218 HOH HOH A . E 3 HOH 69 220 220 HOH HOH A . E 3 HOH 70 222 222 HOH HOH A . E 3 HOH 71 223 223 HOH HOH A . E 3 HOH 72 224 224 HOH HOH A . F 3 HOH 1 102 102 HOH HOH B . F 3 HOH 2 103 103 HOH HOH B . F 3 HOH 3 104 104 HOH HOH B . F 3 HOH 4 115 115 HOH HOH B . F 3 HOH 5 118 118 HOH HOH B . F 3 HOH 6 119 119 HOH HOH B . F 3 HOH 7 120 120 HOH HOH B . F 3 HOH 8 121 121 HOH HOH B . F 3 HOH 9 123 123 HOH HOH B . F 3 HOH 10 126 126 HOH HOH B . F 3 HOH 11 127 127 HOH HOH B . F 3 HOH 12 130 130 HOH HOH B . F 3 HOH 13 135 135 HOH HOH B . F 3 HOH 14 138 138 HOH HOH B . F 3 HOH 15 140 140 HOH HOH B . F 3 HOH 16 145 145 HOH HOH B . F 3 HOH 17 146 146 HOH HOH B . F 3 HOH 18 150 150 HOH HOH B . F 3 HOH 19 153 153 HOH HOH B . F 3 HOH 20 154 154 HOH HOH B . F 3 HOH 21 156 156 HOH HOH B . F 3 HOH 22 157 157 HOH HOH B . F 3 HOH 23 158 158 HOH HOH B . F 3 HOH 24 159 159 HOH HOH B . F 3 HOH 25 161 161 HOH HOH B . F 3 HOH 26 163 163 HOH HOH B . F 3 HOH 27 164 164 HOH HOH B . F 3 HOH 28 166 166 HOH HOH B . F 3 HOH 29 172 172 HOH HOH B . F 3 HOH 30 174 174 HOH HOH B . F 3 HOH 31 177 177 HOH HOH B . F 3 HOH 32 178 178 HOH HOH B . F 3 HOH 33 180 180 HOH HOH B . F 3 HOH 34 181 181 HOH HOH B . F 3 HOH 35 182 182 HOH HOH B . F 3 HOH 36 184 184 HOH HOH B . F 3 HOH 37 188 188 HOH HOH B . F 3 HOH 38 190 190 HOH HOH B . F 3 HOH 39 193 193 HOH HOH B . F 3 HOH 40 200 200 HOH HOH B . F 3 HOH 41 204 204 HOH HOH B . F 3 HOH 42 205 205 HOH HOH B . F 3 HOH 43 206 206 HOH HOH B . F 3 HOH 44 208 208 HOH HOH B . F 3 HOH 45 210 210 HOH HOH B . F 3 HOH 46 212 212 HOH HOH B . F 3 HOH 47 213 213 HOH HOH B . F 3 HOH 48 214 214 HOH HOH B . F 3 HOH 49 217 217 HOH HOH B . F 3 HOH 50 219 219 HOH HOH B . F 3 HOH 51 221 221 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 470D _cell.length_a 42.00 _cell.length_b 35.600 _cell.length_c 47.140 _cell.angle_alpha 90.00 _cell.angle_beta 93.20 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 470D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 470D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.74 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;DROPLETS CONTAINING 2MM OLIGONUCLEOTIDE, 50 MM MGCL2, 50 MM NA HEPES PH 7.5, 15% PEG 400, AGAINST 1 ML OF RESERVOIR SOLUTION CONTAINING 100 MM MGCL2, 100 MM NA HEPES PH 7.5, 30% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 'NA HEPES' ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 MGCL2 ? ? ? 1 5 2 'NA HEPES' ? ? ? 1 6 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1998-04-03 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 470D _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.95 _reflns.number_obs 4996 _reflns.number_all 4996 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 470D _refine.ls_number_reflns_obs 4359 _refine.ls_number_reflns_all 4996 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 85.6 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 602 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 727 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.88 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 470D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 470D _struct.title ;CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O-(2-METHOXYETHYL)-RNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 470D _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;2'-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX, RIBONUCLEIC ACID, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 470D _struct_ref.pdbx_db_accession 470D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 470D A 1 ? 12 ? 470D 1 ? 12 ? 1 12 2 1 470D B 1 ? 12 ? 470D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A C43 1 "O3'" ? ? ? 1_555 A G48 2 P ? ? A C43 1 A G48 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A G48 2 "O3'" ? ? ? 1_555 A C43 3 P ? ? A G48 2 A C43 3 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale one ? A C43 3 "O3'" ? ? ? 1_555 A G48 4 P ? ? A C43 3 A G48 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? A G48 4 "O3'" ? ? ? 1_555 A A44 5 P ? ? A G48 4 A A44 5 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale5 covale both ? A A44 5 "O3'" ? ? ? 1_555 A A44 6 P ? ? A A44 5 A A44 6 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale6 covale both ? A A44 6 "O3'" ? ? ? 1_555 A U36 7 P ? ? A A44 6 A U36 7 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale7 covale one ? A U36 7 "O3'" ? ? ? 1_555 A U36 8 P ? ? A U36 7 A U36 8 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale8 covale one ? A U36 8 "O3'" ? ? ? 1_555 A C43 9 P ? ? A U36 8 A C43 9 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale9 covale one ? A C43 9 "O3'" ? ? ? 1_555 A G48 10 P ? ? A C43 9 A G48 10 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale10 covale both ? A G48 10 "O3'" ? ? ? 1_555 A C43 11 P ? ? A G48 10 A C43 11 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale11 covale one ? A C43 11 "O3'" ? ? ? 1_555 A G48 12 P ? ? A C43 11 A G48 12 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale12 covale one ? B C43 1 "O3'" ? ? ? 1_555 B G48 2 P ? ? B C43 13 B G48 14 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale13 covale both ? B G48 2 "O3'" ? ? ? 1_555 B C43 3 P ? ? B G48 14 B C43 15 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale14 covale one ? B C43 3 "O3'" ? ? ? 1_555 B G48 4 P ? ? B C43 15 B G48 16 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale15 covale both ? B G48 4 "O3'" ? ? ? 1_555 B A44 5 P ? ? B G48 16 B A44 17 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale16 covale both ? B A44 5 "O3'" ? ? ? 1_555 B A44 6 P ? ? B A44 17 B A44 18 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale17 covale both ? B A44 6 "O3'" ? ? ? 1_555 B U36 7 P ? ? B A44 18 B U36 19 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale18 covale one ? B U36 7 "O3'" ? ? ? 1_555 B U36 8 P ? ? B U36 19 B U36 20 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale19 covale one ? B U36 8 "O3'" ? ? ? 1_555 B C43 9 P ? ? B U36 20 B C43 21 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale20 covale one ? B C43 9 "O3'" ? ? ? 1_555 B G48 10 P ? ? B C43 21 B G48 22 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale21 covale both ? B G48 10 "O3'" ? ? ? 1_555 B C43 11 P ? ? B G48 22 B C43 23 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale22 covale one ? B C43 11 "O3'" ? ? ? 1_555 B G48 12 P ? ? B C43 23 B G48 24 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 101 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 100 A HOH 105 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 100 B HOH 102 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 100 B HOH 103 1_555 ? ? ? ? ? ? ? 1.946 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 100 B HOH 104 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 2_656 E HOH . O ? ? A MG 106 A HOH 107 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 106 A HOH 107 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 106 A HOH 108 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 2_656 E HOH . O ? ? A MG 106 A HOH 109 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 106 A HOH 109 1_555 ? ? ? ? ? ? ? 2.035 ? ? hydrog1 hydrog ? ? A C43 1 N3 ? ? ? 1_555 B G48 12 N1 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C43 1 N4 ? ? ? 1_555 B G48 12 O6 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C43 1 O2 ? ? ? 1_555 B G48 12 N2 ? ? A C43 1 B G48 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G48 2 N1 ? ? ? 1_555 B C43 11 N3 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G48 2 N2 ? ? ? 1_555 B C43 11 O2 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G48 2 O6 ? ? ? 1_555 B C43 11 N4 ? ? A G48 2 B C43 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C43 3 N3 ? ? ? 1_555 B G48 10 N1 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C43 3 N4 ? ? ? 1_555 B G48 10 O6 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C43 3 O2 ? ? ? 1_555 B G48 10 N2 ? ? A C43 3 B G48 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G48 4 N1 ? ? ? 1_555 B C43 9 N3 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G48 4 N2 ? ? ? 1_555 B C43 9 O2 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G48 4 O6 ? ? ? 1_555 B C43 9 N4 ? ? A G48 4 B C43 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A44 5 N1 ? ? ? 1_555 B U36 8 N3 ? ? A A44 5 B U36 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A44 5 N6 ? ? ? 1_555 B U36 8 O4 ? ? A A44 5 B U36 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A44 6 N1 ? ? ? 1_555 B U36 7 N3 ? ? A A44 6 B U36 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A44 6 N6 ? ? ? 1_555 B U36 7 O4 ? ? A A44 6 B U36 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U36 7 N3 ? ? ? 1_555 B A44 6 N1 ? ? A U36 7 B A44 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U36 7 O4 ? ? ? 1_555 B A44 6 N6 ? ? A U36 7 B A44 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U36 8 N3 ? ? ? 1_555 B A44 5 N1 ? ? A U36 8 B A44 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U36 8 O4 ? ? ? 1_555 B A44 5 N6 ? ? A U36 8 B A44 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C43 9 N3 ? ? ? 1_555 B G48 4 N1 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C43 9 N4 ? ? ? 1_555 B G48 4 O6 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C43 9 O2 ? ? ? 1_555 B G48 4 N2 ? ? A C43 9 B G48 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G48 10 N1 ? ? ? 1_555 B C43 3 N3 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G48 10 N2 ? ? ? 1_555 B C43 3 O2 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G48 10 O6 ? ? ? 1_555 B C43 3 N4 ? ? A G48 10 B C43 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C43 11 N3 ? ? ? 1_555 B G48 2 N1 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C43 11 N4 ? ? ? 1_555 B G48 2 O6 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C43 11 O2 ? ? ? 1_555 B G48 2 N2 ? ? A C43 11 B G48 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G48 12 N1 ? ? ? 1_555 B C43 1 N3 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G48 12 N2 ? ? ? 1_555 B C43 1 O2 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G48 12 O6 ? ? ? 1_555 B C43 1 N4 ? ? A G48 12 B C43 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? E HOH . ? A HOH 105 ? 1_555 89.7 ? 2 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 86.4 ? 3 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 102 ? 1_555 88.4 ? 4 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 177.6 ? 5 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 92.3 ? 6 O ? F HOH . ? B HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 103 ? 1_555 94.9 ? 7 O ? E HOH . ? A HOH 101 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 104 ? 1_555 87.7 ? 8 O ? E HOH . ? A HOH 105 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 104 ? 1_555 175.4 ? 9 O ? F HOH . ? B HOH 102 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 104 ? 1_555 95.2 ? 10 O ? F HOH . ? B HOH 103 ? 1_555 MG ? C MG . ? A MG 100 ? 1_555 O ? F HOH . ? B HOH 104 ? 1_555 90.2 ? 11 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 107 ? 1_555 0.0 ? 12 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 108 ? 1_555 91.5 ? 13 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 108 ? 1_555 91.5 ? 14 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 96.1 ? 15 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 96.1 ? 16 O ? E HOH . ? A HOH 108 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 90.0 ? 17 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 96.1 ? 18 O ? E HOH . ? A HOH 107 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 96.1 ? 19 O ? E HOH . ? A HOH 108 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 90.0 ? 20 O ? E HOH . ? A HOH 109 ? 1_555 MG ? D MG . ? A MG 106 ? 2_656 O ? E HOH . ? A HOH 109 ? 1_555 0.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 100 ? 5 'BINDING SITE FOR RESIDUE MG A 100' AC2 Software A MG 106 ? 6 'BINDING SITE FOR RESIDUE MG A 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH E . ? HOH A 101 . ? 1_555 ? 2 AC1 5 HOH E . ? HOH A 105 . ? 1_555 ? 3 AC1 5 HOH F . ? HOH B 102 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH B 103 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH B 104 . ? 1_555 ? 6 AC2 6 HOH E . ? HOH A 107 . ? 1_555 ? 7 AC2 6 HOH E . ? HOH A 107 . ? 2_656 ? 8 AC2 6 HOH E . ? HOH A 108 . ? 2_656 ? 9 AC2 6 HOH E . ? HOH A 108 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 109 . ? 2_656 ? 11 AC2 6 HOH E . ? HOH A 109 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C43 1 A C43 1 ? C ? 2 A G48 2 A G48 2 ? G ? 3 A C43 3 A C43 3 ? C ? 4 A G48 4 A G48 4 ? G ? 5 A A44 5 A A44 5 ? A ? 6 A A44 6 A A44 6 ? A ? 7 A U36 7 A U36 7 ? U ? 8 A U36 8 A U36 8 ? U ? 9 A C43 9 A C43 9 ? C ? 10 A G48 10 A G48 10 ? G ? 11 A C43 11 A C43 11 ? C ? 12 A G48 12 A G48 12 ? G ? 13 B C43 1 B C43 13 ? C ? 14 B G48 2 B G48 14 ? G ? 15 B C43 3 B C43 15 ? C ? 16 B G48 4 B G48 16 ? G ? 17 B A44 5 B A44 17 ? A ? 18 B A44 6 B A44 18 ? A ? 19 B U36 7 B U36 19 ? U ? 20 B U36 8 B U36 20 ? U ? 21 B C43 9 B C43 21 ? C ? 22 B G48 10 B G48 22 ? G ? 23 B C43 11 B C43 23 ? C ? 24 B G48 12 B G48 24 ? G ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 106 ? D MG . 2 1 A HOH 113 ? E HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A44 P P N N 1 A44 OP2 O N N 2 A44 OP1 O N N 3 A44 "O5'" O N N 4 A44 "C5'" C N N 5 A44 "C4'" C N R 6 A44 "O4'" O N N 7 A44 "C3'" C N R 8 A44 "O3'" O N N 9 A44 "C2'" C N R 10 A44 "O2'" O N N 11 A44 "C1'" C N R 12 A44 N9 N Y N 13 A44 C8 C Y N 14 A44 N7 N Y N 15 A44 C5 C Y N 16 A44 C6 C Y N 17 A44 N6 N N N 18 A44 N1 N Y N 19 A44 C2 C Y N 20 A44 N3 N Y N 21 A44 C4 C Y N 22 A44 "CA'" C N N 23 A44 "CD'" C N N 24 A44 "OC'" O N N 25 A44 "CB'" C N N 26 A44 OP3 O N N 27 A44 HOP2 H N N 28 A44 "H5'" H N N 29 A44 "H5''" H N N 30 A44 "H4'" H N N 31 A44 "H3'" H N N 32 A44 "HO3'" H N N 33 A44 "H2'" H N N 34 A44 "H1'" H N N 35 A44 H8 H N N 36 A44 H61 H N N 37 A44 H62 H N N 38 A44 H2 H N N 39 A44 HCA2 H N N 40 A44 HCA1 H N N 41 A44 HCD1 H N N 42 A44 HCD2 H N N 43 A44 HCD3 H N N 44 A44 HCB1 H N N 45 A44 HCB2 H N N 46 A44 HOP3 H N N 47 C43 P P N N 48 C43 OP3 O N N 49 C43 OP2 O N N 50 C43 OP1 O N N 51 C43 "O5'" O N N 52 C43 "C5'" C N N 53 C43 "C4'" C N R 54 C43 "O4'" O N N 55 C43 "C3'" C N R 56 C43 "O3'" O N N 57 C43 "C2'" C N R 58 C43 "O2'" O N N 59 C43 "C1'" C N R 60 C43 N1 N N N 61 C43 C2 C N N 62 C43 O2 O N N 63 C43 N3 N N N 64 C43 C4 C N N 65 C43 N4 N N N 66 C43 C5 C N N 67 C43 C6 C N N 68 C43 "CA'" C N N 69 C43 "CB'" C N N 70 C43 "CD'" C N N 71 C43 "OC'" O N N 72 C43 HOP3 H N N 73 C43 HOP2 H N N 74 C43 "H5'1" H N N 75 C43 "H5'2" H N N 76 C43 "H4'" H N N 77 C43 "H3'" H N N 78 C43 HA H N N 79 C43 "H2'" H N N 80 C43 "H1'" H N N 81 C43 H4N1 H N N 82 C43 H4N2 H N N 83 C43 H5 H N N 84 C43 H6 H N N 85 C43 "HA'1" H N N 86 C43 "HA'2" H N N 87 C43 "HB'1" H N N 88 C43 "HB'2" H N N 89 C43 "HD'1" H N N 90 C43 "HD'2" H N N 91 C43 "HD'3" H N N 92 G48 P P N N 93 G48 OP1 O N N 94 G48 OP3 O N N 95 G48 "O5'" O N N 96 G48 "C5'" C N N 97 G48 "C4'" C N R 98 G48 "O4'" O N N 99 G48 "C3'" C N R 100 G48 "O3'" O N N 101 G48 "C2'" C N R 102 G48 "O2'" O N N 103 G48 "C1'" C N R 104 G48 N9 N Y N 105 G48 C8 C Y N 106 G48 N7 N Y N 107 G48 C5 C Y N 108 G48 C6 C N N 109 G48 O6 O N N 110 G48 N1 N N N 111 G48 C2 C N N 112 G48 N2 N N N 113 G48 N3 N N N 114 G48 C4 C Y N 115 G48 "CA'" C N N 116 G48 "CB'" C N N 117 G48 "OC'" O N N 118 G48 "CD'" C N N 119 G48 OP2 O N N 120 G48 HOP3 H N N 121 G48 "H5'" H N N 122 G48 "H5''" H N N 123 G48 "H4'" H N N 124 G48 "H3'" H N N 125 G48 "HO3'" H N N 126 G48 "H2'" H N N 127 G48 "H1'" H N N 128 G48 H8 H N N 129 G48 H1 H N N 130 G48 H21 H N N 131 G48 H22 H N N 132 G48 HCA2 H N N 133 G48 HCA1 H N N 134 G48 HCB1 H N N 135 G48 HCB2 H N N 136 G48 HCD1 H N N 137 G48 HCD2 H N N 138 G48 HCD3 H N N 139 G48 HOP2 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 MG MG MG N N 144 U36 P P N N 145 U36 OP1 O N N 146 U36 OP2 O N N 147 U36 OP3 O N N 148 U36 "O5'" O N N 149 U36 "C5'" C N N 150 U36 "C4'" C N R 151 U36 "O4'" O N N 152 U36 "C3'" C N R 153 U36 "O3'" O N N 154 U36 "C2'" C N R 155 U36 "O2'" O N N 156 U36 "C1'" C N R 157 U36 N1 N N N 158 U36 C2 C N N 159 U36 O2 O N N 160 U36 N3 N N N 161 U36 C4 C N N 162 U36 O4 O N N 163 U36 C5 C N N 164 U36 C6 C N N 165 U36 "CA'" C N N 166 U36 "CB'" C N N 167 U36 "CD'" C N N 168 U36 "OC'" O N N 169 U36 HOP2 H N N 170 U36 HOP3 H N N 171 U36 "H5'1" H N N 172 U36 "H5'2" H N N 173 U36 "H4'" H N N 174 U36 "H3'" H N N 175 U36 HA H N N 176 U36 "H2'" H N N 177 U36 "H1'" H N N 178 U36 H3 H N N 179 U36 H5 H N N 180 U36 H6 H N N 181 U36 "HA'1" H N N 182 U36 "HA'2" H N N 183 U36 "HB'1" H N N 184 U36 "HB'2" H N N 185 U36 "HD'1" H N N 186 U36 "HD'2" H N N 187 U36 "HD'3" H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A44 C2 N1 doub Y N 1 A44 C2 N3 sing Y N 2 A44 N1 C6 sing Y N 3 A44 "CB'" "CA'" sing N N 4 A44 "CB'" "OC'" sing N N 5 A44 N3 C4 doub Y N 6 A44 C6 N6 sing N N 7 A44 C6 C5 doub Y N 8 A44 "CD'" "OC'" sing N N 9 A44 "CA'" "O2'" sing N N 10 A44 C4 C5 sing Y N 11 A44 C4 N9 sing Y N 12 A44 C5 N7 sing Y N 13 A44 "O2'" "C2'" sing N N 14 A44 "C2'" "C1'" sing N N 15 A44 "C2'" "C3'" sing N N 16 A44 N9 "C1'" sing N N 17 A44 N9 C8 sing Y N 18 A44 N7 C8 doub Y N 19 A44 "C1'" "O4'" sing N N 20 A44 "O3'" "C3'" sing N N 21 A44 "C3'" "C4'" sing N N 22 A44 "O4'" "C4'" sing N N 23 A44 "C4'" "C5'" sing N N 24 A44 "O5'" "C5'" sing N N 25 A44 "O5'" P sing N N 26 A44 OP1 P doub N N 27 A44 P OP2 sing N N 28 A44 P OP3 sing N N 29 A44 OP2 HOP2 sing N N 30 A44 "C5'" "H5'" sing N N 31 A44 "C5'" "H5''" sing N N 32 A44 "C4'" "H4'" sing N N 33 A44 "C3'" "H3'" sing N N 34 A44 "O3'" "HO3'" sing N N 35 A44 "C2'" "H2'" sing N N 36 A44 "C1'" "H1'" sing N N 37 A44 C8 H8 sing N N 38 A44 N6 H61 sing N N 39 A44 N6 H62 sing N N 40 A44 C2 H2 sing N N 41 A44 "CA'" HCA2 sing N N 42 A44 "CA'" HCA1 sing N N 43 A44 "CD'" HCD1 sing N N 44 A44 "CD'" HCD2 sing N N 45 A44 "CD'" HCD3 sing N N 46 A44 "CB'" HCB1 sing N N 47 A44 "CB'" HCB2 sing N N 48 A44 OP3 HOP3 sing N N 49 C43 P OP3 sing N N 50 C43 P OP2 sing N N 51 C43 P OP1 doub N N 52 C43 P "O5'" sing N N 53 C43 OP3 HOP3 sing N N 54 C43 OP2 HOP2 sing N N 55 C43 "O5'" "C5'" sing N N 56 C43 "C5'" "C4'" sing N N 57 C43 "C5'" "H5'1" sing N N 58 C43 "C5'" "H5'2" sing N N 59 C43 "C4'" "O4'" sing N N 60 C43 "C4'" "C3'" sing N N 61 C43 "C4'" "H4'" sing N N 62 C43 "O4'" "C1'" sing N N 63 C43 "C3'" "O3'" sing N N 64 C43 "C3'" "C2'" sing N N 65 C43 "C3'" "H3'" sing N N 66 C43 "O3'" HA sing N N 67 C43 "C2'" "O2'" sing N N 68 C43 "C2'" "C1'" sing N N 69 C43 "C2'" "H2'" sing N N 70 C43 "O2'" "CA'" sing N N 71 C43 "C1'" N1 sing N N 72 C43 "C1'" "H1'" sing N N 73 C43 N1 C2 sing N N 74 C43 N1 C6 sing N N 75 C43 C2 O2 doub N N 76 C43 C2 N3 sing N N 77 C43 N3 C4 doub N N 78 C43 C4 N4 sing N N 79 C43 C4 C5 sing N N 80 C43 N4 H4N1 sing N N 81 C43 N4 H4N2 sing N N 82 C43 C5 C6 doub N N 83 C43 C5 H5 sing N N 84 C43 C6 H6 sing N N 85 C43 "CA'" "CB'" sing N N 86 C43 "CA'" "HA'1" sing N N 87 C43 "CA'" "HA'2" sing N N 88 C43 "CB'" "OC'" sing N N 89 C43 "CB'" "HB'1" sing N N 90 C43 "CB'" "HB'2" sing N N 91 C43 "CD'" "OC'" sing N N 92 C43 "CD'" "HD'1" sing N N 93 C43 "CD'" "HD'2" sing N N 94 C43 "CD'" "HD'3" sing N N 95 G48 OP1 P doub N N 96 G48 P "O5'" sing N N 97 G48 P OP3 sing N N 98 G48 "C5'" "O5'" sing N N 99 G48 "C5'" "C4'" sing N N 100 G48 "C4'" "O4'" sing N N 101 G48 "C4'" "C3'" sing N N 102 G48 "O4'" "C1'" sing N N 103 G48 "O3'" "C3'" sing N N 104 G48 "C3'" "C2'" sing N N 105 G48 "C1'" "C2'" sing N N 106 G48 "C1'" N9 sing N N 107 G48 "O2'" "C2'" sing N N 108 G48 "O2'" "CA'" sing N N 109 G48 "CD'" "OC'" sing N N 110 G48 C8 N9 sing Y N 111 G48 C8 N7 doub Y N 112 G48 "CB'" "OC'" sing N N 113 G48 "CB'" "CA'" sing N N 114 G48 N9 C4 sing Y N 115 G48 N7 C5 sing Y N 116 G48 C4 C5 doub Y N 117 G48 C4 N3 sing N N 118 G48 C5 C6 sing N N 119 G48 N3 C2 doub N N 120 G48 C6 O6 doub N N 121 G48 C6 N1 sing N N 122 G48 C2 N1 sing N N 123 G48 C2 N2 sing N N 124 G48 P OP2 sing N N 125 G48 OP3 HOP3 sing N N 126 G48 "C5'" "H5'" sing N N 127 G48 "C5'" "H5''" sing N N 128 G48 "C4'" "H4'" sing N N 129 G48 "C3'" "H3'" sing N N 130 G48 "O3'" "HO3'" sing N N 131 G48 "C2'" "H2'" sing N N 132 G48 "C1'" "H1'" sing N N 133 G48 C8 H8 sing N N 134 G48 N1 H1 sing N N 135 G48 N2 H21 sing N N 136 G48 N2 H22 sing N N 137 G48 "CA'" HCA2 sing N N 138 G48 "CA'" HCA1 sing N N 139 G48 "CB'" HCB1 sing N N 140 G48 "CB'" HCB2 sing N N 141 G48 "CD'" HCD1 sing N N 142 G48 "CD'" HCD2 sing N N 143 G48 "CD'" HCD3 sing N N 144 G48 OP2 HOP2 sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 U36 P OP1 doub N N 148 U36 P OP2 sing N N 149 U36 P OP3 sing N N 150 U36 P "O5'" sing N N 151 U36 OP2 HOP2 sing N N 152 U36 OP3 HOP3 sing N N 153 U36 "O5'" "C5'" sing N N 154 U36 "C5'" "C4'" sing N N 155 U36 "C5'" "H5'1" sing N N 156 U36 "C5'" "H5'2" sing N N 157 U36 "C4'" "O4'" sing N N 158 U36 "C4'" "C3'" sing N N 159 U36 "C4'" "H4'" sing N N 160 U36 "O4'" "C1'" sing N N 161 U36 "C3'" "O3'" sing N N 162 U36 "C3'" "C2'" sing N N 163 U36 "C3'" "H3'" sing N N 164 U36 "O3'" HA sing N N 165 U36 "C2'" "O2'" sing N N 166 U36 "C2'" "C1'" sing N N 167 U36 "C2'" "H2'" sing N N 168 U36 "O2'" "CA'" sing N N 169 U36 "C1'" N1 sing N N 170 U36 "C1'" "H1'" sing N N 171 U36 N1 C2 sing N N 172 U36 N1 C6 sing N N 173 U36 C2 O2 doub N N 174 U36 C2 N3 sing N N 175 U36 N3 C4 sing N N 176 U36 N3 H3 sing N N 177 U36 C4 O4 doub N N 178 U36 C4 C5 sing N N 179 U36 C5 C6 doub N N 180 U36 C5 H5 sing N N 181 U36 C6 H6 sing N N 182 U36 "CA'" "CB'" sing N N 183 U36 "CA'" "HA'1" sing N N 184 U36 "CA'" "HA'2" sing N N 185 U36 "CB'" "OC'" sing N N 186 U36 "CB'" "HB'1" sing N N 187 U36 "CB'" "HB'2" sing N N 188 U36 "CD'" "OC'" sing N N 189 U36 "CD'" "HD'1" sing N N 190 U36 "CD'" "HD'2" sing N N 191 U36 "CD'" "HD'3" sing N N 192 # _ndb_struct_conf_na.entry_id 470D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C43 1 1_555 B G48 12 1_555 0.114 -0.094 0.118 5.796 -11.353 1.004 1 A_C431:G4824_B A 1 ? B 24 ? 19 1 1 A G48 2 1_555 B C43 11 1_555 -0.301 -0.234 0.241 -1.620 -14.335 2.533 2 A_G482:C4323_B A 2 ? B 23 ? 19 1 1 A C43 3 1_555 B G48 10 1_555 0.282 0.106 0.115 -11.036 -11.334 5.036 3 A_C433:G4822_B A 3 ? B 22 ? 19 1 1 A G48 4 1_555 B C43 9 1_555 -0.829 -0.056 -0.256 -13.099 -9.441 5.645 4 A_G484:C4321_B A 4 ? B 21 ? 19 1 1 A A44 5 1_555 B U36 8 1_555 -0.144 0.014 -0.304 -7.342 -6.929 5.938 5 A_A445:U3620_B A 5 ? B 20 ? 20 1 1 A A44 6 1_555 B U36 7 1_555 0.060 0.051 0.029 1.249 -7.389 2.560 6 A_A446:U3619_B A 6 ? B 19 ? 20 1 1 A U36 7 1_555 B A44 6 1_555 -0.148 -0.002 0.321 -0.612 -8.347 6.057 7 A_U367:A4418_B A 7 ? B 18 ? 20 1 1 A U36 8 1_555 B A44 5 1_555 -0.118 -0.179 -0.113 3.862 -13.245 0.648 8 A_U368:A4417_B A 8 ? B 17 ? 20 1 1 A C43 9 1_555 B G48 4 1_555 0.285 -0.075 0.072 0.978 -11.787 3.632 9 A_C439:G4816_B A 9 ? B 16 ? 19 1 1 A G48 10 1_555 B C43 3 1_555 -0.285 -0.117 0.269 4.183 -11.344 -1.025 10 A_G4810:C4315_B A 10 ? B 15 ? 19 1 1 A C43 11 1_555 B G48 2 1_555 0.746 -0.204 0.047 -1.276 -12.076 3.781 11 A_C4311:G4814_B A 11 ? B 14 ? 19 1 1 A G48 12 1_555 B C43 1 1_555 0.146 -0.098 0.587 4.730 -11.927 1.384 12 A_G4812:C4313_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C43 1 1_555 B G48 12 1_555 A G48 2 1_555 B C43 11 1_555 -0.593 -1.859 3.209 -2.150 12.127 29.857 -5.250 0.731 2.332 22.375 3.968 32.244 1 AA_C431G482:C4323G4824_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A G48 2 1_555 B C43 11 1_555 A C43 3 1_555 B G48 10 1_555 -0.059 -1.354 3.486 0.841 13.483 35.726 -3.775 0.197 2.810 21.072 -1.315 38.117 2 AA_G482C433:G4822C4323_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A C43 3 1_555 B G48 10 1_555 A G48 4 1_555 B C43 9 1_555 0.455 -1.782 3.045 0.211 16.264 22.675 -6.676 -0.907 1.464 36.012 -0.468 27.843 3 AA_C433G484:C4321G4822_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A G48 4 1_555 B C43 9 1_555 A A44 5 1_555 B U36 8 1_555 -0.030 -1.853 3.068 -1.703 9.460 31.252 -4.702 -0.200 2.417 17.061 3.072 32.662 4 AA_G484A445:U3620C4321_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A A44 5 1_555 B U36 8 1_555 A A44 6 1_555 B U36 7 1_555 -0.521 -1.532 3.086 -2.337 11.405 30.477 -4.459 0.576 2.405 20.768 4.255 32.575 5 AA_A445A446:U3619U3620_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A A44 6 1_555 B U36 7 1_555 A U36 7 1_555 B A44 6 1_555 0.449 -1.334 3.340 -1.560 14.330 29.810 -4.606 -1.036 2.435 26.028 2.834 33.041 6 AA_A446U367:A4418U3619_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A U36 7 1_555 B A44 6 1_555 A U36 8 1_555 B A44 5 1_555 -0.572 -1.546 3.066 1.280 11.236 29.366 -4.647 1.260 2.307 21.199 -2.414 31.424 7 AA_U367U368:A4417A4418_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A U36 8 1_555 B A44 5 1_555 A C43 9 1_555 B G48 4 1_555 0.082 -1.842 3.383 -2.062 12.592 31.761 -4.992 -0.444 2.485 21.933 3.592 34.167 8 AA_U368C439:G4816A4417_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A C43 9 1_555 B G48 4 1_555 A G48 10 1_555 B C43 3 1_555 -0.402 -1.896 2.993 -1.982 10.894 27.185 -5.654 0.448 2.115 22.052 4.012 29.314 9 AA_C439G4810:C4315G4816_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G48 10 1_555 B C43 3 1_555 A C43 11 1_555 B G48 2 1_555 0.495 -1.360 3.485 4.257 6.992 35.760 -3.156 -0.183 3.207 11.207 -6.823 36.655 10 AA_G4810C4311:G4814C4315_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C43 11 1_555 B G48 2 1_555 A G48 12 1_555 B C43 1 1_555 0.491 -1.631 2.723 0.041 12.778 31.970 -4.242 -0.826 1.948 22.127 -0.071 34.367 11 AA_C4311G4812:C4313G4814_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 470D _atom_sites.fract_transf_matrix[1][1] 0.023810 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001331 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028090 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_