data_475D
# 
_entry.id   475D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.280 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
PDB   475D         
WWPDB D_1000179250 
# 
_pdbx_database_PDB_obs_spr.id               OBSLTE 
_pdbx_database_PDB_obs_spr.date             2001-07-20 
_pdbx_database_PDB_obs_spr.pdb_id           1ENN 
_pdbx_database_PDB_obs_spr.replace_pdb_id   475D 
_pdbx_database_PDB_obs_spr.details          ? 
# 
_pdbx_database_status.entry_id                        475D 
_pdbx_database_status.status_code                     OBS 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.recvd_initial_deposition_date   1999-06-03 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Soler-Lopez, M.' 1 
'Malinina, L.'    2 
'Liu, J.'         3 
'Huynh-Dinh, T.'  4 
'Subirana, J.A.'  5 
# 
_citation.id                        primary 
_citation.title                     'Water and Ions in a High Resolution Structure of B-DNA' 
_citation.journal_abbrev            J.Biol.Chem. 
_citation.journal_volume            274 
_citation.page_first                23683 
_citation.page_last                 ? 
_citation.year                      1999 
_citation.journal_id_ASTM           JBCHA3 
_citation.country                   US 
_citation.journal_id_ISSN           0021-9258 
_citation.journal_id_CSD            0071 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
primary 'Soler-Lopez, M.' 1 
primary 'Malinina, L.'    2 
primary 'Liu, J.'         3 
primary 'Huynh-Dinh, T.'  4 
primary 'Subirana, J.A.'  5 
# 
_cell.entry_id           475D 
_cell.length_a           21.932 
_cell.length_b           36.519 
_cell.length_c           52.733 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         475D 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 non-polymer syn 
;DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3')
;
2930.793 2   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                             24.305   5   ? ? ? ? 
3 non-polymer syn 'CHLORIDE ION'                              35.453   1   ? ? ? ? 
4 non-polymer syn 'SODIUM ION'                                22.990   2   ? ? ? ? 
5 water       nat water                                       18.015   139 ? ? ? ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
CL  non-polymer   . 'CHLORIDE ION'               ? 'Cl -1'           35.453  
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                        ? 'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION'              ? 'Mg 2'            24.305  
NA  non-polymer   . 'SODIUM ION'                 ? 'Na 1'            22.990  
T   'DNA linking' . "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 
# 
_exptl.entry_id          475D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.84 
_exptl_crystal.density_percent_sol   33.19 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    'pH 7.00' 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           110.0 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   1998-08-06 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.9076 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'EMBL/DESY, HAMBURG BEAMLINE X11' 
_diffrn_source.pdbx_synchrotron_site       'EMBL/DESY, Hamburg' 
_diffrn_source.pdbx_synchrotron_beamline   X11 
_diffrn_source.pdbx_wavelength             0.9076 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     475D 
_reflns.observed_criterion_sigma_I   0.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             30.000 
_reflns.d_resolution_high            0.890 
_reflns.number_obs                   32684 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         97.6 
_reflns.pdbx_Rmerge_I_obs            0.059 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_av_sigmaI     ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              6.900 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_netI_over_sigmaI        ? 
# 
_reflns_shell.d_res_high             0.89 
_reflns_shell.d_res_low              0.90 
_reflns_shell.percent_possible_all   59.0 
_reflns_shell.Rmerge_I_obs           0.3 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        1.43 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 475D 
_refine.ls_number_reflns_obs                     ? 
_refine.ls_number_reflns_all                     32479 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             30.0 
_refine.ls_d_res_high                            0.89 
_refine.ls_percent_reflns_obs                    97.6 
_refine.ls_R_factor_obs                          0.145 
_refine.ls_R_factor_all                          0.155 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.155 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 9.90 
_refine.ls_number_reflns_R_free                  3201 
_refine.ls_number_parameters                     5696 
_refine.ls_number_restraints                     3872 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    'MOEWS & KRETSINGER:J.MOL.BIOL.91,201- 228(1973).' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               R-FREE 
_refine.details                                  
;1.THERE ARE SEVERAL PHOSPHATES (2, 7, 11, 18) WHICH SHOULD BE MODELLED BY A CONTINUOUS DISTRIBUTION OF DENSITY. AT PRESENT THEY ARE MODELLED AS A DOUBLE CONFORMATION. AS A RESULT SOME OF THE STEREOCHEMICAL PARAMETERS FOR THESE PHOSPHATES ARE NOT REASONABLE. WE EXPECT TO IMPROVE THIS FEATURE OF THE MODEL. 2.THERE IS A STRING OF RATHER CONTINUOUS ELECTRON DENSITY ON THE MAJOR GROOVE SIDE WHICH HAS BEEN MODELLED AS WATER MOLECULES (NUMBERS 52, 53, 70, 89, 120, 149, 150,151, 155, 167, 168 AND 170 ) WHICH SHOW MANY SHORT INTERMOLECULAR DISTANCES.SOME OF THEM MIGHT CORRESPOND EITHER TO PARTIALLY ORDERED MG2+IONS OR TO INADEQUATE MODELLING OF SOLVENT DISORDER.
;
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'ENGH & HUBER' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        475D 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      10 
_refine_analyze.occupancy_sum_hydrogen          0.00 
_refine_analyze.occupancy_sum_non_hydrogen      506.89 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   381 
_refine_hist.pdbx_number_atoms_ligand         8 
_refine_hist.number_atoms_solvent             144 
_refine_hist.number_atoms_total               533 
_refine_hist.d_res_high                       0.89 
_refine_hist.d_res_low                        30.0 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d               0.041 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d              3.800 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_dist         ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes    ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_zero_chiral_vol      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol  ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_anti_bump_dis_restr  ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_rigid_bond_adp_cmpnt 0.008 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_adp_cmpnt    0.036 ? ? ? 'X-RAY DIFFRACTION' ? 
s_approx_iso_adps      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    475D 
_pdbx_refine.R_factor_all_no_cutoff                      0.155 
_pdbx_refine.R_factor_obs_no_cutoff                      0.145 
_pdbx_refine.free_R_factor_no_cutoff                     0.155 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     9.90 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            3201 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.148 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.145 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.148 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   9.80 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          2722 
_pdbx_refine.number_reflns_obs_4sig_cutoff               27733 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_struct.entry_id                  475D 
_struct.title                     'WATER AND IONS IN A HIGH RESOLUTION STRUCTURE OF B-DNA' 
_struct.pdbx_descriptor           "5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3'" 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        475D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, BASE TRIPLET, IONS, ATOMIC RESOLUTION, DEOXYRIBONUCLEIC ACID, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 3 ? 
I N N 4 ? 
J N N 4 ? 
K N N 5 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
hydrog1  hydrog ? ? A C . N3 ? ? ? 1_555 B G . N1 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog2  hydrog ? ? A C . N4 ? ? ? 1_555 B G . O6 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog3  hydrog ? ? A C . O2 ? ? ? 1_555 B G . N2 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog4  hydrog ? ? A G . N1 ? ? ? 1_555 B C . N3 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog5  hydrog ? ? A G . N2 ? ? ? 1_555 B C . O2 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog6  hydrog ? ? A G . O6 ? ? ? 1_555 B C . N4 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog7  hydrog ? ? A A . N1 ? ? ? 1_555 B T . N3 ? ? A A 4 B T 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog8  hydrog ? ? A A . N6 ? ? ? 1_555 B T . O4 ? ? A A 4 B T 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog9  hydrog ? ? A A . N1 ? ? ? 1_555 B T . N3 ? ? A A 5 B T 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog10 hydrog ? ? A A . N6 ? ? ? 1_555 B T . O4 ? ? A A 5 B T 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog11 hydrog ? ? A T . N3 ? ? ? 1_555 B A . N1 ? ? A T 6 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog12 hydrog ? ? A T . O4 ? ? ? 1_555 B A . N6 ? ? A T 6 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog13 hydrog ? ? A T . N3 ? ? ? 1_555 B A . N1 ? ? A T 7 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog14 hydrog ? ? A T . O4 ? ? ? 1_555 B A . N6 ? ? A T 7 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog15 hydrog ? ? A C . N3 ? ? ? 1_555 B G . N1 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog16 hydrog ? ? A C . N4 ? ? ? 1_555 B G . O6 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog17 hydrog ? ? A C . O2 ? ? ? 1_555 B G . N2 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog18 hydrog ? ? A G . N1 ? ? ? 1_555 B C . N3 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog19 hydrog ? ? A G . N2 ? ? ? 1_555 B C . O2 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
hydrog20 hydrog ? ? A G . O6 ? ? ? 1_555 B C . N4 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
_database_PDB_matrix.entry_id          475D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    475D 
_atom_sites.fract_transf_matrix[1][1]   0.045595 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.027383 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018963 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
CL 
MG 
N  
NA 
O  
P  
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
A 1 G   1   1   1   G   G   A . 
A 1 C   2   2   2   C   C   A . 
A 1 G   3   3   3   G   G   A . 
A 1 A   4   4   4   A   A   A . 
A 1 A   5   5   5   A   A   A . 
A 1 T   6   6   6   T   T   A . 
A 1 T   7   7   7   T   T   A . 
A 1 C   8   8   8   C   C   A . 
A 1 G   9   9   9   G   G   A . 
B 1 G   1   10  10  G   G   B . 
B 1 C   2   11  11  C   C   B . 
B 1 G   3   12  12  G   G   B . 
B 1 A   4   13  13  A   A   B . 
B 1 A   5   14  14  A   A   B . 
B 1 T   6   15  15  T   T   B . 
B 1 T   7   16  16  T   T   B . 
B 1 C   8   17  17  C   C   B . 
B 1 G   9   18  18  G   G   B . 
C 2 MG  1   19  19  MG  MG  ? . 
D 2 MG  1   26  26  MG  MG  ? . 
E 2 MG  1   31  31  MG  MG  ? . 
F 2 MG  1   38  38  MG  MG  ? . 
G 2 MG  1   44  44  MG  MG  ? . 
H 3 CL  1   301 301 CL  CL  ? . 
I 4 NA  1   201 201 NA  NA  ? . 
J 4 NA  1   202 202 NA  NA  ? . 
K 5 HOH 1   20  20  HOH HOH ? . 
K 5 HOH 2   21  21  HOH HOH ? . 
K 5 HOH 3   22  22  HOH HOH ? . 
K 5 HOH 4   23  23  HOH HOH ? . 
K 5 HOH 5   24  24  HOH HOH ? . 
K 5 HOH 6   25  25  HOH HOH ? . 
K 5 HOH 7   27  27  HOH HOH ? . 
K 5 HOH 8   28  28  HOH HOH ? . 
K 5 HOH 9   29  29  HOH HOH ? . 
K 5 HOH 10  30  30  HOH HOH ? . 
K 5 HOH 11  32  32  HOH HOH ? . 
K 5 HOH 12  33  33  HOH HOH ? . 
K 5 HOH 13  34  34  HOH HOH ? . 
K 5 HOH 14  35  35  HOH HOH ? . 
K 5 HOH 15  36  36  HOH HOH ? . 
K 5 HOH 16  37  37  HOH HOH ? . 
K 5 HOH 17  39  39  HOH HOH ? . 
K 5 HOH 18  40  40  HOH HOH ? . 
K 5 HOH 19  41  41  HOH HOH ? . 
K 5 HOH 20  42  42  HOH HOH ? . 
K 5 HOH 21  43  43  HOH HOH ? . 
K 5 HOH 22  45  45  HOH HOH ? . 
K 5 HOH 23  46  46  HOH HOH ? . 
K 5 HOH 24  47  47  HOH HOH ? . 
K 5 HOH 25  48  48  HOH HOH ? . 
K 5 HOH 26  49  49  HOH HOH ? . 
K 5 HOH 27  52  52  HOH HOH ? . 
K 5 HOH 28  53  53  HOH HOH ? . 
K 5 HOH 29  55  55  HOH HOH ? . 
K 5 HOH 30  57  57  HOH HOH ? . 
K 5 HOH 31  58  58  HOH HOH ? . 
K 5 HOH 32  59  59  HOH HOH ? . 
K 5 HOH 33  60  60  HOH HOH ? . 
K 5 HOH 34  61  61  HOH HOH ? . 
K 5 HOH 35  62  62  HOH HOH ? . 
K 5 HOH 36  63  63  HOH HOH ? . 
K 5 HOH 37  64  64  HOH HOH ? . 
K 5 HOH 38  65  65  HOH HOH ? . 
K 5 HOH 39  66  66  HOH HOH ? . 
K 5 HOH 40  67  67  HOH HOH ? . 
K 5 HOH 41  68  68  HOH HOH ? . 
K 5 HOH 42  69  69  HOH HOH ? . 
K 5 HOH 43  70  70  HOH HOH ? . 
K 5 HOH 44  71  71  HOH HOH ? . 
K 5 HOH 45  72  72  HOH HOH ? . 
K 5 HOH 46  73  73  HOH HOH ? . 
K 5 HOH 47  74  74  HOH HOH ? . 
K 5 HOH 48  75  75  HOH HOH ? . 
K 5 HOH 49  76  76  HOH HOH ? . 
K 5 HOH 50  77  77  HOH HOH ? . 
K 5 HOH 51  78  78  HOH HOH ? . 
K 5 HOH 52  79  79  HOH HOH ? . 
K 5 HOH 53  80  80  HOH HOH ? . 
K 5 HOH 54  81  81  HOH HOH ? . 
K 5 HOH 55  82  82  HOH HOH ? . 
K 5 HOH 56  83  83  HOH HOH ? . 
K 5 HOH 57  84  84  HOH HOH ? . 
K 5 HOH 58  85  85  HOH HOH ? . 
K 5 HOH 59  86  86  HOH HOH ? . 
K 5 HOH 60  87  87  HOH HOH ? . 
K 5 HOH 61  88  88  HOH HOH ? . 
K 5 HOH 62  89  89  HOH HOH ? . 
K 5 HOH 63  90  90  HOH HOH ? . 
K 5 HOH 64  91  91  HOH HOH ? . 
K 5 HOH 65  92  92  HOH HOH ? . 
K 5 HOH 66  93  93  HOH HOH ? . 
K 5 HOH 67  94  94  HOH HOH ? . 
K 5 HOH 68  95  95  HOH HOH ? . 
K 5 HOH 69  96  96  HOH HOH ? . 
K 5 HOH 70  97  97  HOH HOH ? . 
K 5 HOH 71  98  98  HOH HOH ? . 
K 5 HOH 72  99  99  HOH HOH ? . 
K 5 HOH 73  100 100 HOH HOH ? . 
K 5 HOH 74  101 101 HOH HOH ? . 
K 5 HOH 75  102 102 HOH HOH ? . 
K 5 HOH 76  103 103 HOH HOH ? . 
K 5 HOH 77  104 104 HOH HOH ? . 
K 5 HOH 78  105 105 HOH HOH ? . 
K 5 HOH 79  106 106 HOH HOH ? . 
K 5 HOH 80  107 107 HOH HOH ? . 
K 5 HOH 81  108 108 HOH HOH ? . 
K 5 HOH 82  109 109 HOH HOH ? . 
K 5 HOH 83  110 110 HOH HOH ? . 
K 5 HOH 84  111 111 HOH HOH ? . 
K 5 HOH 85  112 112 HOH HOH ? . 
K 5 HOH 86  113 113 HOH HOH ? . 
K 5 HOH 87  114 114 HOH HOH ? . 
K 5 HOH 88  115 115 HOH HOH ? . 
K 5 HOH 89  116 116 HOH HOH ? . 
K 5 HOH 90  117 117 HOH HOH ? . 
K 5 HOH 91  118 118 HOH HOH ? . 
K 5 HOH 92  119 119 HOH HOH ? . 
K 5 HOH 93  120 120 HOH HOH ? . 
K 5 HOH 94  121 121 HOH HOH ? . 
K 5 HOH 95  122 122 HOH HOH ? . 
K 5 HOH 96  123 123 HOH HOH ? . 
K 5 HOH 97  124 124 HOH HOH ? . 
K 5 HOH 98  125 125 HOH HOH ? . 
K 5 HOH 99  126 126 HOH HOH ? . 
K 5 HOH 100 127 127 HOH HOH ? . 
K 5 HOH 101 128 128 HOH HOH ? . 
K 5 HOH 102 129 129 HOH HOH ? . 
K 5 HOH 103 130 130 HOH HOH ? . 
K 5 HOH 104 131 131 HOH HOH ? . 
K 5 HOH 105 132 132 HOH HOH ? . 
K 5 HOH 106 133 133 HOH HOH ? . 
K 5 HOH 107 134 134 HOH HOH ? . 
K 5 HOH 108 135 135 HOH HOH ? . 
K 5 HOH 109 136 136 HOH HOH ? . 
K 5 HOH 110 137 137 HOH HOH ? . 
K 5 HOH 111 138 138 HOH HOH ? . 
K 5 HOH 112 139 139 HOH HOH ? . 
K 5 HOH 113 140 140 HOH HOH ? . 
K 5 HOH 114 141 141 HOH HOH ? . 
K 5 HOH 115 143 143 HOH HOH ? . 
K 5 HOH 116 144 144 HOH HOH ? . 
K 5 HOH 117 145 145 HOH HOH ? . 
K 5 HOH 118 146 146 HOH HOH ? . 
K 5 HOH 119 147 147 HOH HOH ? . 
K 5 HOH 120 149 149 HOH HOH ? . 
K 5 HOH 121 150 150 HOH HOH ? . 
K 5 HOH 122 151 151 HOH HOH ? . 
K 5 HOH 123 152 152 HOH HOH ? . 
K 5 HOH 124 154 154 HOH HOH ? . 
K 5 HOH 125 155 155 HOH HOH ? . 
K 5 HOH 126 156 156 HOH HOH ? . 
K 5 HOH 127 157 157 HOH HOH ? . 
K 5 HOH 128 158 158 HOH HOH ? . 
K 5 HOH 129 159 159 HOH HOH ? . 
K 5 HOH 130 160 160 HOH HOH ? . 
K 5 HOH 131 161 161 HOH HOH ? . 
K 5 HOH 132 162 162 HOH HOH ? . 
K 5 HOH 133 163 163 HOH HOH ? . 
K 5 HOH 134 164 164 HOH HOH ? . 
K 5 HOH 135 165 165 HOH HOH ? . 
K 5 HOH 136 168 168 HOH HOH ? . 
K 5 HOH 137 167 167 HOH HOH ? . 
K 5 HOH 138 169 169 HOH HOH ? . 
K 5 HOH 139 170 170 HOH HOH ? . 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1999-06-14 
2 'Structure model' 1 1 2001-07-20 
# 
loop_
_pdbx_audit_revision_details.ordinal 
_pdbx_audit_revision_details.revision_ordinal 
_pdbx_audit_revision_details.data_content_type 
_pdbx_audit_revision_details.provider 
_pdbx_audit_revision_details.type 
_pdbx_audit_revision_details.description 
1 1 'Structure model' repository 'Initial release' ? 
2 2 'Structure model' repository Obsolete          ? 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DENZO     'data collection' . ? 1 
SCALEPACK 'data reduction'  . ? 2 
AMoRE     'model building'  . ? 3 
SHELXL-97 refinement        . ? 4 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1  1 O3* B G   10 ? ? P   B C   11  ? B 1.29 
2  1 O3* A G   1  ? ? P   A C   2   ? A 1.52 
3  1 O3* B C   17 ? ? P   B G   18  ? B 1.52 
4  1 O3* B G   10 ? ? P   B C   11  ? A 1.54 
5  1 O3* A C   8  ? ? P   A G   9   ? ? 1.54 
6  1 O3* B A   13 ? ? P   B A   14  ? ? 1.56 
7  1 O3* A C   2  ? ? P   A G   3   ? ? 1.57 
8  1 O3* A G   3  ? ? P   A A   4   ? ? 1.57 
9  1 O3* A A   5  ? ? P   A T   6   ? ? 1.57 
10 1 O3* B T   16 ? ? P   B C   17  ? ? 1.57 
11 1 O3* B G   12 ? ? P   B A   13  ? ? 1.58 
12 1 O3* A G   1  ? ? P   A C   2   ? B 1.59 
13 1 O3* B A   14 ? ? P   B T   15  ? ? 1.59 
14 1 O3* B C   11 ? ? P   B G   12  ? ? 1.59 
15 1 O3* B C   17 ? ? P   B G   18  ? A 1.59 
16 1 O3* A A   4  ? ? P   A A   5   ? ? 1.60 
17 1 O3* B T   15 ? ? P   B T   16  ? ? 1.60 
18 1 O3* A T   7  ? ? P   A C   8   ? ? 1.61 
19 1 O   . HOH 52 ? ? O   . HOH 53  ? ? 1.97 
20 1 O   . HOH 52 ? ? O   . HOH 120 ? ? 2.17 
21 1 O3* B G   10 ? ? O2P B C   11  ? A 2.18 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1   1 N 1 A G 1  ? OP3   ? A G 1 OP3   
2   1 N 1 A G 1  ? P     ? A G 1 P     
3   1 N 1 A G 1  ? OP1   ? A G 1 OP1   
4   1 N 1 A G 1  ? OP2   ? A G 1 OP2   
5   1 N 1 A G 1  ? "O5'" ? A G 1 "O5'" 
6   1 N 1 A G 1  ? "C5'" ? A G 1 "C5'" 
7   1 N 1 A G 1  ? "C4'" ? A G 1 "C4'" 
8   1 N 1 A G 1  ? "O4'" ? A G 1 "O4'" 
9   1 N 1 A G 1  ? "C3'" ? A G 1 "C3'" 
10  1 N 1 A G 1  ? "O3'" ? A G 1 "O3'" 
11  1 N 1 A G 1  ? "C2'" ? A G 1 "C2'" 
12  1 N 1 A G 1  ? "O2'" ? A G 1 "O2'" 
13  1 N 1 A G 1  ? "C1'" ? A G 1 "C1'" 
14  1 N 1 A C 2  ? OP3   ? A C 2 OP3   
15  1 N 1 A C 2  ? OP1   ? A C 2 OP1   
16  1 N 1 A C 2  ? OP2   ? A C 2 OP2   
17  1 N 1 A C 2  ? "O5'" ? A C 2 "O5'" 
18  1 N 1 A C 2  ? "C5'" ? A C 2 "C5'" 
19  1 N 1 A C 2  ? "C4'" ? A C 2 "C4'" 
20  1 N 1 A C 2  ? "O4'" ? A C 2 "O4'" 
21  1 N 1 A C 2  ? "C3'" ? A C 2 "C3'" 
22  1 N 1 A C 2  ? "O3'" ? A C 2 "O3'" 
23  1 N 1 A C 2  ? "C2'" ? A C 2 "C2'" 
24  1 N 1 A C 2  ? "O2'" ? A C 2 "O2'" 
25  1 N 1 A C 2  ? "C1'" ? A C 2 "C1'" 
26  1 N 1 A G 3  ? OP3   ? A G 3 OP3   
27  1 N 1 A G 3  ? OP1   ? A G 3 OP1   
28  1 N 1 A G 3  ? OP2   ? A G 3 OP2   
29  1 N 1 A G 3  ? "O5'" ? A G 3 "O5'" 
30  1 N 1 A G 3  ? "C5'" ? A G 3 "C5'" 
31  1 N 1 A G 3  ? "C4'" ? A G 3 "C4'" 
32  1 N 1 A G 3  ? "O4'" ? A G 3 "O4'" 
33  1 N 1 A G 3  ? "C3'" ? A G 3 "C3'" 
34  1 N 1 A G 3  ? "O3'" ? A G 3 "O3'" 
35  1 N 1 A G 3  ? "C2'" ? A G 3 "C2'" 
36  1 N 1 A G 3  ? "O2'" ? A G 3 "O2'" 
37  1 N 1 A G 3  ? "C1'" ? A G 3 "C1'" 
38  1 N 1 A A 4  ? OP3   ? A A 4 OP3   
39  1 N 1 A A 4  ? OP1   ? A A 4 OP1   
40  1 N 1 A A 4  ? OP2   ? A A 4 OP2   
41  1 N 1 A A 4  ? "O5'" ? A A 4 "O5'" 
42  1 N 1 A A 4  ? "C5'" ? A A 4 "C5'" 
43  1 N 1 A A 4  ? "C4'" ? A A 4 "C4'" 
44  1 N 1 A A 4  ? "O4'" ? A A 4 "O4'" 
45  1 N 1 A A 4  ? "C3'" ? A A 4 "C3'" 
46  1 N 1 A A 4  ? "O3'" ? A A 4 "O3'" 
47  1 N 1 A A 4  ? "C2'" ? A A 4 "C2'" 
48  1 N 1 A A 4  ? "O2'" ? A A 4 "O2'" 
49  1 N 1 A A 4  ? "C1'" ? A A 4 "C1'" 
50  1 N 1 A A 5  ? OP3   ? A A 5 OP3   
51  1 N 1 A A 5  ? OP1   ? A A 5 OP1   
52  1 N 1 A A 5  ? OP2   ? A A 5 OP2   
53  1 N 1 A A 5  ? "O5'" ? A A 5 "O5'" 
54  1 N 1 A A 5  ? "C5'" ? A A 5 "C5'" 
55  1 N 1 A A 5  ? "C4'" ? A A 5 "C4'" 
56  1 N 1 A A 5  ? "O4'" ? A A 5 "O4'" 
57  1 N 1 A A 5  ? "C3'" ? A A 5 "C3'" 
58  1 N 1 A A 5  ? "O3'" ? A A 5 "O3'" 
59  1 N 1 A A 5  ? "C2'" ? A A 5 "C2'" 
60  1 N 1 A A 5  ? "O2'" ? A A 5 "O2'" 
61  1 N 1 A A 5  ? "C1'" ? A A 5 "C1'" 
62  1 N 1 A T 6  ? OP3   ? A T 6 OP3   
63  1 N 1 A T 6  ? OP1   ? A T 6 OP1   
64  1 N 1 A T 6  ? OP2   ? A T 6 OP2   
65  1 N 1 A T 6  ? "O5'" ? A T 6 "O5'" 
66  1 N 1 A T 6  ? "C5'" ? A T 6 "C5'" 
67  1 N 1 A T 6  ? "C4'" ? A T 6 "C4'" 
68  1 N 1 A T 6  ? "O4'" ? A T 6 "O4'" 
69  1 N 1 A T 6  ? "C3'" ? A T 6 "C3'" 
70  1 N 1 A T 6  ? "O3'" ? A T 6 "O3'" 
71  1 N 1 A T 6  ? "C2'" ? A T 6 "C2'" 
72  1 N 1 A T 6  ? "C1'" ? A T 6 "C1'" 
73  1 N 1 A T 6  ? C7    ? A T 6 C7    
74  1 N 1 A T 7  ? OP3   ? A T 7 OP3   
75  1 N 1 A T 7  ? OP1   ? A T 7 OP1   
76  1 N 1 A T 7  ? OP2   ? A T 7 OP2   
77  1 N 1 A T 7  ? "O5'" ? A T 7 "O5'" 
78  1 N 1 A T 7  ? "C5'" ? A T 7 "C5'" 
79  1 N 1 A T 7  ? "C4'" ? A T 7 "C4'" 
80  1 N 1 A T 7  ? "O4'" ? A T 7 "O4'" 
81  1 N 1 A T 7  ? "C3'" ? A T 7 "C3'" 
82  1 N 1 A T 7  ? "O3'" ? A T 7 "O3'" 
83  1 N 1 A T 7  ? "C2'" ? A T 7 "C2'" 
84  1 N 1 A T 7  ? "C1'" ? A T 7 "C1'" 
85  1 N 1 A T 7  ? C7    ? A T 7 C7    
86  1 N 1 A C 8  ? OP3   ? A C 8 OP3   
87  1 N 1 A C 8  ? OP1   ? A C 8 OP1   
88  1 N 1 A C 8  ? OP2   ? A C 8 OP2   
89  1 N 1 A C 8  ? "O5'" ? A C 8 "O5'" 
90  1 N 1 A C 8  ? "C5'" ? A C 8 "C5'" 
91  1 N 1 A C 8  ? "C4'" ? A C 8 "C4'" 
92  1 N 1 A C 8  ? "O4'" ? A C 8 "O4'" 
93  1 N 1 A C 8  ? "C3'" ? A C 8 "C3'" 
94  1 N 1 A C 8  ? "O3'" ? A C 8 "O3'" 
95  1 N 1 A C 8  ? "C2'" ? A C 8 "C2'" 
96  1 N 1 A C 8  ? "O2'" ? A C 8 "O2'" 
97  1 N 1 A C 8  ? "C1'" ? A C 8 "C1'" 
98  1 N 1 A G 9  ? OP3   ? A G 9 OP3   
99  1 N 1 A G 9  ? OP1   ? A G 9 OP1   
100 1 N 1 A G 9  ? OP2   ? A G 9 OP2   
101 1 N 1 A G 9  ? "O5'" ? A G 9 "O5'" 
102 1 N 1 A G 9  ? "C5'" ? A G 9 "C5'" 
103 1 N 1 A G 9  ? "C4'" ? A G 9 "C4'" 
104 1 N 1 A G 9  ? "O4'" ? A G 9 "O4'" 
105 1 N 1 A G 9  ? "C3'" ? A G 9 "C3'" 
106 1 N 1 A G 9  ? "O3'" ? A G 9 "O3'" 
107 1 N 1 A G 9  ? "C2'" ? A G 9 "C2'" 
108 1 N 1 A G 9  ? "O2'" ? A G 9 "O2'" 
109 1 N 1 A G 9  ? "C1'" ? A G 9 "C1'" 
110 1 N 1 B G 10 ? OP3   ? B G 1 OP3   
111 1 N 1 B G 10 ? P     ? B G 1 P     
112 1 N 1 B G 10 ? OP1   ? B G 1 OP1   
113 1 N 1 B G 10 ? OP2   ? B G 1 OP2   
114 1 N 1 B G 10 ? "O5'" ? B G 1 "O5'" 
115 1 N 1 B G 10 ? "C5'" ? B G 1 "C5'" 
116 1 N 1 B G 10 ? "C4'" ? B G 1 "C4'" 
117 1 N 1 B G 10 ? "O4'" ? B G 1 "O4'" 
118 1 N 1 B G 10 ? "C3'" ? B G 1 "C3'" 
119 1 N 1 B G 10 ? "O3'" ? B G 1 "O3'" 
120 1 N 1 B G 10 ? "C2'" ? B G 1 "C2'" 
121 1 N 1 B G 10 ? "O2'" ? B G 1 "O2'" 
122 1 N 1 B G 10 ? "C1'" ? B G 1 "C1'" 
123 1 N 1 B C 11 ? OP3   ? B C 2 OP3   
124 1 N 1 B C 11 ? OP1   ? B C 2 OP1   
125 1 N 1 B C 11 ? OP2   ? B C 2 OP2   
126 1 N 1 B C 11 ? "O5'" ? B C 2 "O5'" 
127 1 N 1 B C 11 ? "C5'" ? B C 2 "C5'" 
128 1 N 1 B C 11 ? "C4'" ? B C 2 "C4'" 
129 1 N 1 B C 11 ? "O4'" ? B C 2 "O4'" 
130 1 N 1 B C 11 ? "C3'" ? B C 2 "C3'" 
131 1 N 1 B C 11 ? "O3'" ? B C 2 "O3'" 
132 1 N 1 B C 11 ? "C2'" ? B C 2 "C2'" 
133 1 N 1 B C 11 ? "O2'" ? B C 2 "O2'" 
134 1 N 1 B C 11 ? "C1'" ? B C 2 "C1'" 
135 1 N 1 B G 12 ? OP3   ? B G 3 OP3   
136 1 N 1 B G 12 ? OP1   ? B G 3 OP1   
137 1 N 1 B G 12 ? OP2   ? B G 3 OP2   
138 1 N 1 B G 12 ? "O5'" ? B G 3 "O5'" 
139 1 N 1 B G 12 ? "C5'" ? B G 3 "C5'" 
140 1 N 1 B G 12 ? "C4'" ? B G 3 "C4'" 
141 1 N 1 B G 12 ? "O4'" ? B G 3 "O4'" 
142 1 N 1 B G 12 ? "C3'" ? B G 3 "C3'" 
143 1 N 1 B G 12 ? "O3'" ? B G 3 "O3'" 
144 1 N 1 B G 12 ? "C2'" ? B G 3 "C2'" 
145 1 N 1 B G 12 ? "O2'" ? B G 3 "O2'" 
146 1 N 1 B G 12 ? "C1'" ? B G 3 "C1'" 
147 1 N 1 B A 13 ? OP3   ? B A 4 OP3   
148 1 N 1 B A 13 ? OP1   ? B A 4 OP1   
149 1 N 1 B A 13 ? OP2   ? B A 4 OP2   
150 1 N 1 B A 13 ? "O5'" ? B A 4 "O5'" 
151 1 N 1 B A 13 ? "C5'" ? B A 4 "C5'" 
152 1 N 1 B A 13 ? "C4'" ? B A 4 "C4'" 
153 1 N 1 B A 13 ? "O4'" ? B A 4 "O4'" 
154 1 N 1 B A 13 ? "C3'" ? B A 4 "C3'" 
155 1 N 1 B A 13 ? "O3'" ? B A 4 "O3'" 
156 1 N 1 B A 13 ? "C2'" ? B A 4 "C2'" 
157 1 N 1 B A 13 ? "O2'" ? B A 4 "O2'" 
158 1 N 1 B A 13 ? "C1'" ? B A 4 "C1'" 
159 1 N 1 B A 14 ? OP3   ? B A 5 OP3   
160 1 N 1 B A 14 ? OP1   ? B A 5 OP1   
161 1 N 1 B A 14 ? OP2   ? B A 5 OP2   
162 1 N 1 B A 14 ? "O5'" ? B A 5 "O5'" 
163 1 N 1 B A 14 ? "C5'" ? B A 5 "C5'" 
164 1 N 1 B A 14 ? "C4'" ? B A 5 "C4'" 
165 1 N 1 B A 14 ? "O4'" ? B A 5 "O4'" 
166 1 N 1 B A 14 ? "C3'" ? B A 5 "C3'" 
167 1 N 1 B A 14 ? "O3'" ? B A 5 "O3'" 
168 1 N 1 B A 14 ? "C2'" ? B A 5 "C2'" 
169 1 N 1 B A 14 ? "O2'" ? B A 5 "O2'" 
170 1 N 1 B A 14 ? "C1'" ? B A 5 "C1'" 
171 1 N 1 B T 15 ? OP3   ? B T 6 OP3   
172 1 N 1 B T 15 ? OP1   ? B T 6 OP1   
173 1 N 1 B T 15 ? OP2   ? B T 6 OP2   
174 1 N 1 B T 15 ? "O5'" ? B T 6 "O5'" 
175 1 N 1 B T 15 ? "C5'" ? B T 6 "C5'" 
176 1 N 1 B T 15 ? "C4'" ? B T 6 "C4'" 
177 1 N 1 B T 15 ? "O4'" ? B T 6 "O4'" 
178 1 N 1 B T 15 ? "C3'" ? B T 6 "C3'" 
179 1 N 1 B T 15 ? "O3'" ? B T 6 "O3'" 
180 1 N 1 B T 15 ? "C2'" ? B T 6 "C2'" 
181 1 N 1 B T 15 ? "C1'" ? B T 6 "C1'" 
182 1 N 1 B T 15 ? C7    ? B T 6 C7    
183 1 N 1 B T 16 ? OP3   ? B T 7 OP3   
184 1 N 1 B T 16 ? OP1   ? B T 7 OP1   
185 1 N 1 B T 16 ? OP2   ? B T 7 OP2   
186 1 N 1 B T 16 ? "O5'" ? B T 7 "O5'" 
187 1 N 1 B T 16 ? "C5'" ? B T 7 "C5'" 
188 1 N 1 B T 16 ? "C4'" ? B T 7 "C4'" 
189 1 N 1 B T 16 ? "O4'" ? B T 7 "O4'" 
190 1 N 1 B T 16 ? "C3'" ? B T 7 "C3'" 
191 1 N 1 B T 16 ? "O3'" ? B T 7 "O3'" 
192 1 N 1 B T 16 ? "C2'" ? B T 7 "C2'" 
193 1 N 1 B T 16 ? "C1'" ? B T 7 "C1'" 
194 1 N 1 B T 16 ? C7    ? B T 7 C7    
195 1 N 1 B C 17 ? OP3   ? B C 8 OP3   
196 1 N 1 B C 17 ? OP1   ? B C 8 OP1   
197 1 N 1 B C 17 ? OP2   ? B C 8 OP2   
198 1 N 1 B C 17 ? "O5'" ? B C 8 "O5'" 
199 1 N 1 B C 17 ? "C5'" ? B C 8 "C5'" 
200 1 N 1 B C 17 ? "C4'" ? B C 8 "C4'" 
201 1 N 1 B C 17 ? "O4'" ? B C 8 "O4'" 
202 1 N 1 B C 17 ? "C3'" ? B C 8 "C3'" 
203 1 N 1 B C 17 ? "O3'" ? B C 8 "O3'" 
204 1 N 1 B C 17 ? "C2'" ? B C 8 "C2'" 
205 1 N 1 B C 17 ? "O2'" ? B C 8 "O2'" 
206 1 N 1 B C 17 ? "C1'" ? B C 8 "C1'" 
207 1 N 1 B G 18 ? OP3   ? B G 9 OP3   
208 1 N 1 B G 18 ? OP1   ? B G 9 OP1   
209 1 N 1 B G 18 ? OP2   ? B G 9 OP2   
210 1 N 1 B G 18 ? "O5'" ? B G 9 "O5'" 
211 1 N 1 B G 18 ? "C5'" ? B G 9 "C5'" 
212 1 N 1 B G 18 ? "C4'" ? B G 9 "C4'" 
213 1 N 1 B G 18 ? "O4'" ? B G 9 "O4'" 
214 1 N 1 B G 18 ? "C3'" ? B G 9 "C3'" 
215 1 N 1 B G 18 ? "O3'" ? B G 9 "O3'" 
216 1 N 1 B G 18 ? "C2'" ? B G 9 "C2'" 
217 1 N 1 B G 18 ? "O2'" ? B G 9 "O2'" 
218 1 N 1 B G 18 ? "C1'" ? B G 9 "C1'" 
# 
_ndb_struct_conf_na.entry_id   475D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A C . 1_555 B G . 1_555 0.178  -0.121 0.055  -0.015 0.000 -1.280 1 A_C2:G18_B A 2 ? B 18 ? 19 1 
1 A G . 1_555 B C . 1_555 -0.337 -0.170 -0.025 3.923  0.000 -1.972 2 A_G3:C17_B A 3 ? B 17 ? 19 1 
1 A A . 1_555 B T . 1_555 0.023  -0.117 0.065  11.391 0.000 0.384  3 A_A4:T16_B A 4 ? B 16 ? 20 1 
1 A A . 1_555 B T . 1_555 0.001  -0.108 0.051  3.288  0.000 2.886  4 A_A5:T15_B A 5 ? B 15 ? 20 1 
1 A T . 1_555 B A . 1_555 -0.024 -0.100 0.140  -2.374 0.000 5.617  5 A_T6:A14_B A 6 ? B 14 ? 20 1 
1 A T . 1_555 B A . 1_555 -0.121 -0.150 -0.065 -8.114 0.000 1.084  6 A_T7:A13_B A 7 ? B 13 ? 20 1 
1 A C . 1_555 B G . 1_555 0.258  -0.148 -0.178 -2.706 0.000 0.644  7 A_C8:G12_B A 8 ? B 12 ? 19 1 
1 A G . 1_555 B C . 1_555 -0.262 -0.116 0.156  2.920  0.000 0.229  8 A_G9:C11_B A 9 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A C . 1_555 B G . 1_555 A G . 1_555 B C . 1_555 0.858  0.978  3.208 2.283  5.813  29.371 0.669  -1.179 3.390 11.304 -4.439 
30.013 1 AA_C2G3:C17G18_BB A 2 ? B 18 ? A 3 ? B 17 ? 
1 A G . 1_555 B C . 1_555 A A . 1_555 B T . 1_555 -0.822 1.344  3.228 -0.949 4.222  37.823 1.518  1.139  3.372 6.487  1.458  
38.061 2 AA_G3A4:T16C17_BB A 3 ? B 17 ? A 4 ? B 16 ? 
1 A A . 1_555 B T . 1_555 A A . 1_555 B T . 1_555 0.372  -0.399 3.386 -0.727 2.050  38.624 -0.862 -0.654 3.354 3.096  1.097  
38.682 3 AA_A4A5:T15T16_BB A 4 ? B 16 ? A 5 ? B 15 ? 
1 A A . 1_555 B T . 1_555 A T . 1_555 B A . 1_555 0.165  -0.622 3.324 -0.062 -0.122 31.110 -1.137 -0.320 3.326 -0.227 0.115  
31.110 4 AA_A5T6:A14T15_BB A 5 ? B 15 ? A 6 ? B 14 ? 
1 A T . 1_555 B A . 1_555 A T . 1_555 B A . 1_555 -0.454 -0.216 3.285 2.980  2.328  37.861 -0.627 1.074  3.223 3.577  -4.578 
38.042 5 AA_T6T7:A13A14_BB A 6 ? B 14 ? A 7 ? B 13 ? 
1 A T . 1_555 B A . 1_555 A C . 1_555 B G . 1_555 1.051  1.292  3.258 1.094  -0.626 39.431 1.988  -1.428 3.265 -0.927 -1.621 
39.451 6 AA_T7C8:G12A13_BB A 7 ? B 13 ? A 8 ? B 12 ? 
1 A C . 1_555 B G . 1_555 A G . 1_555 B C . 1_555 -1.537 0.906  3.222 -5.077 5.398  30.228 0.607  1.848  3.532 10.160 9.556  
31.102 7 AA_C8G9:C11G12_BB A 8 ? B 12 ? A 9 ? B 11 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
1 
;DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3')
;
G   
2 'MAGNESIUM ION'                             MG  
3 'CHLORIDE ION'                              CL  
4 'SODIUM ION'                                NA  
5 water                                       HOH 
#