data_475D # _entry.id 475D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 475D WWPDB D_1000179250 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2001-07-20 _pdbx_database_PDB_obs_spr.pdb_id 1ENN _pdbx_database_PDB_obs_spr.replace_pdb_id 475D _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 475D _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 1999-06-03 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soler-Lopez, M.' 1 'Malinina, L.' 2 'Liu, J.' 3 'Huynh-Dinh, T.' 4 'Subirana, J.A.' 5 # _citation.id primary _citation.title 'Water and Ions in a High Resolution Structure of B-DNA' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 274 _citation.page_first 23683 _citation.page_last ? _citation.year 1999 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Soler-Lopez, M.' 1 primary 'Malinina, L.' 2 primary 'Liu, J.' 3 primary 'Huynh-Dinh, T.' 4 primary 'Subirana, J.A.' 5 # _cell.entry_id 475D _cell.length_a 21.932 _cell.length_b 36.519 _cell.length_c 52.733 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 475D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 non-polymer syn ;DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3') ; 2930.793 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 139 ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 T 'DNA linking' . "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.entry_id 475D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_percent_sol 33.19 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.00' # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-08-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9076 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.9076 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 475D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 0.890 _reflns.number_obs 32684 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.900 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 0.90 _reflns_shell.percent_possible_all 59.0 _reflns_shell.Rmerge_I_obs 0.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.43 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 475D _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 32479 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 0.89 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_obs 0.145 _refine.ls_R_factor_all 0.155 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.155 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.90 _refine.ls_number_reflns_R_free 3201 _refine.ls_number_parameters 5696 _refine.ls_number_restraints 3872 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER:J.MOL.BIOL.91,201- 228(1973).' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method R-FREE _refine.details ;1.THERE ARE SEVERAL PHOSPHATES (2, 7, 11, 18) WHICH SHOULD BE MODELLED BY A CONTINUOUS DISTRIBUTION OF DENSITY. AT PRESENT THEY ARE MODELLED AS A DOUBLE CONFORMATION. AS A RESULT SOME OF THE STEREOCHEMICAL PARAMETERS FOR THESE PHOSPHATES ARE NOT REASONABLE. WE EXPECT TO IMPROVE THIS FEATURE OF THE MODEL. 2.THERE IS A STRING OF RATHER CONTINUOUS ELECTRON DENSITY ON THE MAJOR GROOVE SIDE WHICH HAS BEEN MODELLED AS WATER MOLECULES (NUMBERS 52, 53, 70, 89, 120, 149, 150,151, 155, 167, 168 AND 170 ) WHICH SHOW MANY SHORT INTERMOLECULAR DISTANCES.SOME OF THEM MIGHT CORRESPOND EITHER TO PARTIALLY ORDERED MG2+IONS OR TO INADEQUATE MODELLING OF SOLVENT DISORDER. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 475D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 10 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 506.89 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 381 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 533 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 30.0 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.041 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 3.800 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 475D _pdbx_refine.R_factor_all_no_cutoff 0.155 _pdbx_refine.R_factor_obs_no_cutoff 0.145 _pdbx_refine.free_R_factor_no_cutoff 0.155 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.90 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 3201 _pdbx_refine.R_factor_all_4sig_cutoff 0.148 _pdbx_refine.R_factor_obs_4sig_cutoff 0.145 _pdbx_refine.free_R_factor_4sig_cutoff 0.148 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 9.80 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 2722 _pdbx_refine.number_reflns_obs_4sig_cutoff 27733 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 475D _struct.title 'WATER AND IONS IN A HIGH RESOLUTION STRUCTURE OF B-DNA' _struct.pdbx_descriptor "5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 475D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, BASE TRIPLET, IONS, ATOMIC RESOLUTION, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A C . N3 ? ? ? 1_555 B G . N1 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A C . N4 ? ? ? 1_555 B G . O6 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A C . O2 ? ? ? 1_555 B G . N2 ? ? A C 2 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G . N1 ? ? ? 1_555 B C . N3 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G . N2 ? ? ? 1_555 B C . O2 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G . O6 ? ? ? 1_555 B C . N4 ? ? A G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A . N1 ? ? ? 1_555 B T . N3 ? ? A A 4 B T 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A . N6 ? ? ? 1_555 B T . O4 ? ? A A 4 B T 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A A . N1 ? ? ? 1_555 B T . N3 ? ? A A 5 B T 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A A . N6 ? ? ? 1_555 B T . O4 ? ? A A 5 B T 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A T . N3 ? ? ? 1_555 B A . N1 ? ? A T 6 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A T . O4 ? ? ? 1_555 B A . N6 ? ? A T 6 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A T . N3 ? ? ? 1_555 B A . N1 ? ? A T 7 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A T . O4 ? ? ? 1_555 B A . N6 ? ? A T 7 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C . N3 ? ? ? 1_555 B G . N1 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A C . N4 ? ? ? 1_555 B G . O6 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C . O2 ? ? ? 1_555 B G . N2 ? ? A C 8 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G . N1 ? ? ? 1_555 B C . N3 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A G . N2 ? ? ? 1_555 B C . O2 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G . O6 ? ? ? 1_555 B C . N4 ? ? A G 9 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 475D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 475D _atom_sites.fract_transf_matrix[1][1] 0.045595 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027383 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018963 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N NA O P # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code A 1 G 1 1 1 G G A . A 1 C 2 2 2 C C A . A 1 G 3 3 3 G G A . A 1 A 4 4 4 A A A . A 1 A 5 5 5 A A A . A 1 T 6 6 6 T T A . A 1 T 7 7 7 T T A . A 1 C 8 8 8 C C A . A 1 G 9 9 9 G G A . B 1 G 1 10 10 G G B . B 1 C 2 11 11 C C B . B 1 G 3 12 12 G G B . B 1 A 4 13 13 A A B . B 1 A 5 14 14 A A B . B 1 T 6 15 15 T T B . B 1 T 7 16 16 T T B . B 1 C 8 17 17 C C B . B 1 G 9 18 18 G G B . C 2 MG 1 19 19 MG MG ? . D 2 MG 1 26 26 MG MG ? . E 2 MG 1 31 31 MG MG ? . F 2 MG 1 38 38 MG MG ? . G 2 MG 1 44 44 MG MG ? . H 3 CL 1 301 301 CL CL ? . I 4 NA 1 201 201 NA NA ? . J 4 NA 1 202 202 NA NA ? . K 5 HOH 1 20 20 HOH HOH ? . K 5 HOH 2 21 21 HOH HOH ? . K 5 HOH 3 22 22 HOH HOH ? . K 5 HOH 4 23 23 HOH HOH ? . K 5 HOH 5 24 24 HOH HOH ? . K 5 HOH 6 25 25 HOH HOH ? . K 5 HOH 7 27 27 HOH HOH ? . K 5 HOH 8 28 28 HOH HOH ? . K 5 HOH 9 29 29 HOH HOH ? . K 5 HOH 10 30 30 HOH HOH ? . K 5 HOH 11 32 32 HOH HOH ? . K 5 HOH 12 33 33 HOH HOH ? . K 5 HOH 13 34 34 HOH HOH ? . K 5 HOH 14 35 35 HOH HOH ? . K 5 HOH 15 36 36 HOH HOH ? . K 5 HOH 16 37 37 HOH HOH ? . K 5 HOH 17 39 39 HOH HOH ? . K 5 HOH 18 40 40 HOH HOH ? . K 5 HOH 19 41 41 HOH HOH ? . K 5 HOH 20 42 42 HOH HOH ? . K 5 HOH 21 43 43 HOH HOH ? . K 5 HOH 22 45 45 HOH HOH ? . K 5 HOH 23 46 46 HOH HOH ? . K 5 HOH 24 47 47 HOH HOH ? . K 5 HOH 25 48 48 HOH HOH ? . K 5 HOH 26 49 49 HOH HOH ? . K 5 HOH 27 52 52 HOH HOH ? . K 5 HOH 28 53 53 HOH HOH ? . K 5 HOH 29 55 55 HOH HOH ? . K 5 HOH 30 57 57 HOH HOH ? . K 5 HOH 31 58 58 HOH HOH ? . K 5 HOH 32 59 59 HOH HOH ? . K 5 HOH 33 60 60 HOH HOH ? . K 5 HOH 34 61 61 HOH HOH ? . K 5 HOH 35 62 62 HOH HOH ? . K 5 HOH 36 63 63 HOH HOH ? . K 5 HOH 37 64 64 HOH HOH ? . K 5 HOH 38 65 65 HOH HOH ? . K 5 HOH 39 66 66 HOH HOH ? . K 5 HOH 40 67 67 HOH HOH ? . K 5 HOH 41 68 68 HOH HOH ? . K 5 HOH 42 69 69 HOH HOH ? . K 5 HOH 43 70 70 HOH HOH ? . K 5 HOH 44 71 71 HOH HOH ? . K 5 HOH 45 72 72 HOH HOH ? . K 5 HOH 46 73 73 HOH HOH ? . K 5 HOH 47 74 74 HOH HOH ? . K 5 HOH 48 75 75 HOH HOH ? . K 5 HOH 49 76 76 HOH HOH ? . K 5 HOH 50 77 77 HOH HOH ? . K 5 HOH 51 78 78 HOH HOH ? . K 5 HOH 52 79 79 HOH HOH ? . K 5 HOH 53 80 80 HOH HOH ? . K 5 HOH 54 81 81 HOH HOH ? . K 5 HOH 55 82 82 HOH HOH ? . K 5 HOH 56 83 83 HOH HOH ? . K 5 HOH 57 84 84 HOH HOH ? . K 5 HOH 58 85 85 HOH HOH ? . K 5 HOH 59 86 86 HOH HOH ? . K 5 HOH 60 87 87 HOH HOH ? . K 5 HOH 61 88 88 HOH HOH ? . K 5 HOH 62 89 89 HOH HOH ? . K 5 HOH 63 90 90 HOH HOH ? . K 5 HOH 64 91 91 HOH HOH ? . K 5 HOH 65 92 92 HOH HOH ? . K 5 HOH 66 93 93 HOH HOH ? . K 5 HOH 67 94 94 HOH HOH ? . K 5 HOH 68 95 95 HOH HOH ? . K 5 HOH 69 96 96 HOH HOH ? . K 5 HOH 70 97 97 HOH HOH ? . K 5 HOH 71 98 98 HOH HOH ? . K 5 HOH 72 99 99 HOH HOH ? . K 5 HOH 73 100 100 HOH HOH ? . K 5 HOH 74 101 101 HOH HOH ? . K 5 HOH 75 102 102 HOH HOH ? . K 5 HOH 76 103 103 HOH HOH ? . K 5 HOH 77 104 104 HOH HOH ? . K 5 HOH 78 105 105 HOH HOH ? . K 5 HOH 79 106 106 HOH HOH ? . K 5 HOH 80 107 107 HOH HOH ? . K 5 HOH 81 108 108 HOH HOH ? . K 5 HOH 82 109 109 HOH HOH ? . K 5 HOH 83 110 110 HOH HOH ? . K 5 HOH 84 111 111 HOH HOH ? . K 5 HOH 85 112 112 HOH HOH ? . K 5 HOH 86 113 113 HOH HOH ? . K 5 HOH 87 114 114 HOH HOH ? . K 5 HOH 88 115 115 HOH HOH ? . K 5 HOH 89 116 116 HOH HOH ? . K 5 HOH 90 117 117 HOH HOH ? . K 5 HOH 91 118 118 HOH HOH ? . K 5 HOH 92 119 119 HOH HOH ? . K 5 HOH 93 120 120 HOH HOH ? . K 5 HOH 94 121 121 HOH HOH ? . K 5 HOH 95 122 122 HOH HOH ? . K 5 HOH 96 123 123 HOH HOH ? . K 5 HOH 97 124 124 HOH HOH ? . K 5 HOH 98 125 125 HOH HOH ? . K 5 HOH 99 126 126 HOH HOH ? . K 5 HOH 100 127 127 HOH HOH ? . K 5 HOH 101 128 128 HOH HOH ? . K 5 HOH 102 129 129 HOH HOH ? . K 5 HOH 103 130 130 HOH HOH ? . K 5 HOH 104 131 131 HOH HOH ? . K 5 HOH 105 132 132 HOH HOH ? . K 5 HOH 106 133 133 HOH HOH ? . K 5 HOH 107 134 134 HOH HOH ? . K 5 HOH 108 135 135 HOH HOH ? . K 5 HOH 109 136 136 HOH HOH ? . K 5 HOH 110 137 137 HOH HOH ? . K 5 HOH 111 138 138 HOH HOH ? . K 5 HOH 112 139 139 HOH HOH ? . K 5 HOH 113 140 140 HOH HOH ? . K 5 HOH 114 141 141 HOH HOH ? . K 5 HOH 115 143 143 HOH HOH ? . K 5 HOH 116 144 144 HOH HOH ? . K 5 HOH 117 145 145 HOH HOH ? . K 5 HOH 118 146 146 HOH HOH ? . K 5 HOH 119 147 147 HOH HOH ? . K 5 HOH 120 149 149 HOH HOH ? . K 5 HOH 121 150 150 HOH HOH ? . K 5 HOH 122 151 151 HOH HOH ? . K 5 HOH 123 152 152 HOH HOH ? . K 5 HOH 124 154 154 HOH HOH ? . K 5 HOH 125 155 155 HOH HOH ? . K 5 HOH 126 156 156 HOH HOH ? . K 5 HOH 127 157 157 HOH HOH ? . K 5 HOH 128 158 158 HOH HOH ? . K 5 HOH 129 159 159 HOH HOH ? . K 5 HOH 130 160 160 HOH HOH ? . K 5 HOH 131 161 161 HOH HOH ? . K 5 HOH 132 162 162 HOH HOH ? . K 5 HOH 133 163 163 HOH HOH ? . K 5 HOH 134 164 164 HOH HOH ? . K 5 HOH 135 165 165 HOH HOH ? . K 5 HOH 136 168 168 HOH HOH ? . K 5 HOH 137 167 167 HOH HOH ? . K 5 HOH 138 169 169 HOH HOH ? . K 5 HOH 139 170 170 HOH HOH ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-14 2 'Structure model' 1 1 2001-07-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 AMoRE 'model building' . ? 3 SHELXL-97 refinement . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O3* B G 10 ? ? P B C 11 ? B 1.29 2 1 O3* A G 1 ? ? P A C 2 ? A 1.52 3 1 O3* B C 17 ? ? P B G 18 ? B 1.52 4 1 O3* B G 10 ? ? P B C 11 ? A 1.54 5 1 O3* A C 8 ? ? P A G 9 ? ? 1.54 6 1 O3* B A 13 ? ? P B A 14 ? ? 1.56 7 1 O3* A C 2 ? ? P A G 3 ? ? 1.57 8 1 O3* A G 3 ? ? P A A 4 ? ? 1.57 9 1 O3* A A 5 ? ? P A T 6 ? ? 1.57 10 1 O3* B T 16 ? ? P B C 17 ? ? 1.57 11 1 O3* B G 12 ? ? P B A 13 ? ? 1.58 12 1 O3* A G 1 ? ? P A C 2 ? B 1.59 13 1 O3* B A 14 ? ? P B T 15 ? ? 1.59 14 1 O3* B C 11 ? ? P B G 12 ? ? 1.59 15 1 O3* B C 17 ? ? P B G 18 ? A 1.59 16 1 O3* A A 4 ? ? P A A 5 ? ? 1.60 17 1 O3* B T 15 ? ? P B T 16 ? ? 1.60 18 1 O3* A T 7 ? ? P A C 8 ? ? 1.61 19 1 O . HOH 52 ? ? O . HOH 53 ? ? 1.97 20 1 O . HOH 52 ? ? O . HOH 120 ? ? 2.17 21 1 O3* B G 10 ? ? O2P B C 11 ? A 2.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A G 1 ? OP3 ? A G 1 OP3 2 1 N 1 A G 1 ? P ? A G 1 P 3 1 N 1 A G 1 ? OP1 ? A G 1 OP1 4 1 N 1 A G 1 ? OP2 ? A G 1 OP2 5 1 N 1 A G 1 ? "O5'" ? A G 1 "O5'" 6 1 N 1 A G 1 ? "C5'" ? A G 1 "C5'" 7 1 N 1 A G 1 ? "C4'" ? A G 1 "C4'" 8 1 N 1 A G 1 ? "O4'" ? A G 1 "O4'" 9 1 N 1 A G 1 ? "C3'" ? A G 1 "C3'" 10 1 N 1 A G 1 ? "O3'" ? A G 1 "O3'" 11 1 N 1 A G 1 ? "C2'" ? A G 1 "C2'" 12 1 N 1 A G 1 ? "O2'" ? A G 1 "O2'" 13 1 N 1 A G 1 ? "C1'" ? A G 1 "C1'" 14 1 N 1 A C 2 ? OP3 ? A C 2 OP3 15 1 N 1 A C 2 ? OP1 ? A C 2 OP1 16 1 N 1 A C 2 ? OP2 ? A C 2 OP2 17 1 N 1 A C 2 ? "O5'" ? A C 2 "O5'" 18 1 N 1 A C 2 ? "C5'" ? A C 2 "C5'" 19 1 N 1 A C 2 ? "C4'" ? A C 2 "C4'" 20 1 N 1 A C 2 ? "O4'" ? A C 2 "O4'" 21 1 N 1 A C 2 ? "C3'" ? A C 2 "C3'" 22 1 N 1 A C 2 ? "O3'" ? A C 2 "O3'" 23 1 N 1 A C 2 ? "C2'" ? A C 2 "C2'" 24 1 N 1 A C 2 ? "O2'" ? A C 2 "O2'" 25 1 N 1 A C 2 ? "C1'" ? A C 2 "C1'" 26 1 N 1 A G 3 ? OP3 ? A G 3 OP3 27 1 N 1 A G 3 ? OP1 ? A G 3 OP1 28 1 N 1 A G 3 ? OP2 ? A G 3 OP2 29 1 N 1 A G 3 ? "O5'" ? A G 3 "O5'" 30 1 N 1 A G 3 ? "C5'" ? A G 3 "C5'" 31 1 N 1 A G 3 ? "C4'" ? A G 3 "C4'" 32 1 N 1 A G 3 ? "O4'" ? A G 3 "O4'" 33 1 N 1 A G 3 ? "C3'" ? A G 3 "C3'" 34 1 N 1 A G 3 ? "O3'" ? A G 3 "O3'" 35 1 N 1 A G 3 ? "C2'" ? A G 3 "C2'" 36 1 N 1 A G 3 ? "O2'" ? A G 3 "O2'" 37 1 N 1 A G 3 ? "C1'" ? A G 3 "C1'" 38 1 N 1 A A 4 ? OP3 ? A A 4 OP3 39 1 N 1 A A 4 ? OP1 ? A A 4 OP1 40 1 N 1 A A 4 ? OP2 ? A A 4 OP2 41 1 N 1 A A 4 ? "O5'" ? A A 4 "O5'" 42 1 N 1 A A 4 ? "C5'" ? A A 4 "C5'" 43 1 N 1 A A 4 ? "C4'" ? A A 4 "C4'" 44 1 N 1 A A 4 ? "O4'" ? A A 4 "O4'" 45 1 N 1 A A 4 ? "C3'" ? A A 4 "C3'" 46 1 N 1 A A 4 ? "O3'" ? A A 4 "O3'" 47 1 N 1 A A 4 ? "C2'" ? A A 4 "C2'" 48 1 N 1 A A 4 ? "O2'" ? A A 4 "O2'" 49 1 N 1 A A 4 ? "C1'" ? A A 4 "C1'" 50 1 N 1 A A 5 ? OP3 ? A A 5 OP3 51 1 N 1 A A 5 ? OP1 ? A A 5 OP1 52 1 N 1 A A 5 ? OP2 ? A A 5 OP2 53 1 N 1 A A 5 ? "O5'" ? A A 5 "O5'" 54 1 N 1 A A 5 ? "C5'" ? A A 5 "C5'" 55 1 N 1 A A 5 ? "C4'" ? A A 5 "C4'" 56 1 N 1 A A 5 ? "O4'" ? A A 5 "O4'" 57 1 N 1 A A 5 ? "C3'" ? A A 5 "C3'" 58 1 N 1 A A 5 ? "O3'" ? A A 5 "O3'" 59 1 N 1 A A 5 ? "C2'" ? A A 5 "C2'" 60 1 N 1 A A 5 ? "O2'" ? A A 5 "O2'" 61 1 N 1 A A 5 ? "C1'" ? A A 5 "C1'" 62 1 N 1 A T 6 ? OP3 ? A T 6 OP3 63 1 N 1 A T 6 ? OP1 ? A T 6 OP1 64 1 N 1 A T 6 ? OP2 ? A T 6 OP2 65 1 N 1 A T 6 ? "O5'" ? A T 6 "O5'" 66 1 N 1 A T 6 ? "C5'" ? A T 6 "C5'" 67 1 N 1 A T 6 ? "C4'" ? A T 6 "C4'" 68 1 N 1 A T 6 ? "O4'" ? A T 6 "O4'" 69 1 N 1 A T 6 ? "C3'" ? A T 6 "C3'" 70 1 N 1 A T 6 ? "O3'" ? A T 6 "O3'" 71 1 N 1 A T 6 ? "C2'" ? A T 6 "C2'" 72 1 N 1 A T 6 ? "C1'" ? A T 6 "C1'" 73 1 N 1 A T 6 ? C7 ? A T 6 C7 74 1 N 1 A T 7 ? OP3 ? A T 7 OP3 75 1 N 1 A T 7 ? OP1 ? A T 7 OP1 76 1 N 1 A T 7 ? OP2 ? A T 7 OP2 77 1 N 1 A T 7 ? "O5'" ? A T 7 "O5'" 78 1 N 1 A T 7 ? "C5'" ? A T 7 "C5'" 79 1 N 1 A T 7 ? "C4'" ? A T 7 "C4'" 80 1 N 1 A T 7 ? "O4'" ? A T 7 "O4'" 81 1 N 1 A T 7 ? "C3'" ? A T 7 "C3'" 82 1 N 1 A T 7 ? "O3'" ? A T 7 "O3'" 83 1 N 1 A T 7 ? "C2'" ? A T 7 "C2'" 84 1 N 1 A T 7 ? "C1'" ? A T 7 "C1'" 85 1 N 1 A T 7 ? C7 ? A T 7 C7 86 1 N 1 A C 8 ? OP3 ? A C 8 OP3 87 1 N 1 A C 8 ? OP1 ? A C 8 OP1 88 1 N 1 A C 8 ? OP2 ? A C 8 OP2 89 1 N 1 A C 8 ? "O5'" ? A C 8 "O5'" 90 1 N 1 A C 8 ? "C5'" ? A C 8 "C5'" 91 1 N 1 A C 8 ? "C4'" ? A C 8 "C4'" 92 1 N 1 A C 8 ? "O4'" ? A C 8 "O4'" 93 1 N 1 A C 8 ? "C3'" ? A C 8 "C3'" 94 1 N 1 A C 8 ? "O3'" ? A C 8 "O3'" 95 1 N 1 A C 8 ? "C2'" ? A C 8 "C2'" 96 1 N 1 A C 8 ? "O2'" ? A C 8 "O2'" 97 1 N 1 A C 8 ? "C1'" ? A C 8 "C1'" 98 1 N 1 A G 9 ? OP3 ? A G 9 OP3 99 1 N 1 A G 9 ? OP1 ? A G 9 OP1 100 1 N 1 A G 9 ? OP2 ? A G 9 OP2 101 1 N 1 A G 9 ? "O5'" ? A G 9 "O5'" 102 1 N 1 A G 9 ? "C5'" ? A G 9 "C5'" 103 1 N 1 A G 9 ? "C4'" ? A G 9 "C4'" 104 1 N 1 A G 9 ? "O4'" ? A G 9 "O4'" 105 1 N 1 A G 9 ? "C3'" ? A G 9 "C3'" 106 1 N 1 A G 9 ? "O3'" ? A G 9 "O3'" 107 1 N 1 A G 9 ? "C2'" ? A G 9 "C2'" 108 1 N 1 A G 9 ? "O2'" ? A G 9 "O2'" 109 1 N 1 A G 9 ? "C1'" ? A G 9 "C1'" 110 1 N 1 B G 10 ? OP3 ? B G 1 OP3 111 1 N 1 B G 10 ? P ? B G 1 P 112 1 N 1 B G 10 ? OP1 ? B G 1 OP1 113 1 N 1 B G 10 ? OP2 ? B G 1 OP2 114 1 N 1 B G 10 ? "O5'" ? B G 1 "O5'" 115 1 N 1 B G 10 ? "C5'" ? B G 1 "C5'" 116 1 N 1 B G 10 ? "C4'" ? B G 1 "C4'" 117 1 N 1 B G 10 ? "O4'" ? B G 1 "O4'" 118 1 N 1 B G 10 ? "C3'" ? B G 1 "C3'" 119 1 N 1 B G 10 ? "O3'" ? B G 1 "O3'" 120 1 N 1 B G 10 ? "C2'" ? B G 1 "C2'" 121 1 N 1 B G 10 ? "O2'" ? B G 1 "O2'" 122 1 N 1 B G 10 ? "C1'" ? B G 1 "C1'" 123 1 N 1 B C 11 ? OP3 ? B C 2 OP3 124 1 N 1 B C 11 ? OP1 ? B C 2 OP1 125 1 N 1 B C 11 ? OP2 ? B C 2 OP2 126 1 N 1 B C 11 ? "O5'" ? B C 2 "O5'" 127 1 N 1 B C 11 ? "C5'" ? B C 2 "C5'" 128 1 N 1 B C 11 ? "C4'" ? B C 2 "C4'" 129 1 N 1 B C 11 ? "O4'" ? B C 2 "O4'" 130 1 N 1 B C 11 ? "C3'" ? B C 2 "C3'" 131 1 N 1 B C 11 ? "O3'" ? B C 2 "O3'" 132 1 N 1 B C 11 ? "C2'" ? B C 2 "C2'" 133 1 N 1 B C 11 ? "O2'" ? B C 2 "O2'" 134 1 N 1 B C 11 ? "C1'" ? B C 2 "C1'" 135 1 N 1 B G 12 ? OP3 ? B G 3 OP3 136 1 N 1 B G 12 ? OP1 ? B G 3 OP1 137 1 N 1 B G 12 ? OP2 ? B G 3 OP2 138 1 N 1 B G 12 ? "O5'" ? B G 3 "O5'" 139 1 N 1 B G 12 ? "C5'" ? B G 3 "C5'" 140 1 N 1 B G 12 ? "C4'" ? B G 3 "C4'" 141 1 N 1 B G 12 ? "O4'" ? B G 3 "O4'" 142 1 N 1 B G 12 ? "C3'" ? B G 3 "C3'" 143 1 N 1 B G 12 ? "O3'" ? B G 3 "O3'" 144 1 N 1 B G 12 ? "C2'" ? B G 3 "C2'" 145 1 N 1 B G 12 ? "O2'" ? B G 3 "O2'" 146 1 N 1 B G 12 ? "C1'" ? B G 3 "C1'" 147 1 N 1 B A 13 ? OP3 ? B A 4 OP3 148 1 N 1 B A 13 ? OP1 ? B A 4 OP1 149 1 N 1 B A 13 ? OP2 ? B A 4 OP2 150 1 N 1 B A 13 ? "O5'" ? B A 4 "O5'" 151 1 N 1 B A 13 ? "C5'" ? B A 4 "C5'" 152 1 N 1 B A 13 ? "C4'" ? B A 4 "C4'" 153 1 N 1 B A 13 ? "O4'" ? B A 4 "O4'" 154 1 N 1 B A 13 ? "C3'" ? B A 4 "C3'" 155 1 N 1 B A 13 ? "O3'" ? B A 4 "O3'" 156 1 N 1 B A 13 ? "C2'" ? B A 4 "C2'" 157 1 N 1 B A 13 ? "O2'" ? B A 4 "O2'" 158 1 N 1 B A 13 ? "C1'" ? B A 4 "C1'" 159 1 N 1 B A 14 ? OP3 ? B A 5 OP3 160 1 N 1 B A 14 ? OP1 ? B A 5 OP1 161 1 N 1 B A 14 ? OP2 ? B A 5 OP2 162 1 N 1 B A 14 ? "O5'" ? B A 5 "O5'" 163 1 N 1 B A 14 ? "C5'" ? B A 5 "C5'" 164 1 N 1 B A 14 ? "C4'" ? B A 5 "C4'" 165 1 N 1 B A 14 ? "O4'" ? B A 5 "O4'" 166 1 N 1 B A 14 ? "C3'" ? B A 5 "C3'" 167 1 N 1 B A 14 ? "O3'" ? B A 5 "O3'" 168 1 N 1 B A 14 ? "C2'" ? B A 5 "C2'" 169 1 N 1 B A 14 ? "O2'" ? B A 5 "O2'" 170 1 N 1 B A 14 ? "C1'" ? B A 5 "C1'" 171 1 N 1 B T 15 ? OP3 ? B T 6 OP3 172 1 N 1 B T 15 ? OP1 ? B T 6 OP1 173 1 N 1 B T 15 ? OP2 ? B T 6 OP2 174 1 N 1 B T 15 ? "O5'" ? B T 6 "O5'" 175 1 N 1 B T 15 ? "C5'" ? B T 6 "C5'" 176 1 N 1 B T 15 ? "C4'" ? B T 6 "C4'" 177 1 N 1 B T 15 ? "O4'" ? B T 6 "O4'" 178 1 N 1 B T 15 ? "C3'" ? B T 6 "C3'" 179 1 N 1 B T 15 ? "O3'" ? B T 6 "O3'" 180 1 N 1 B T 15 ? "C2'" ? B T 6 "C2'" 181 1 N 1 B T 15 ? "C1'" ? B T 6 "C1'" 182 1 N 1 B T 15 ? C7 ? B T 6 C7 183 1 N 1 B T 16 ? OP3 ? B T 7 OP3 184 1 N 1 B T 16 ? OP1 ? B T 7 OP1 185 1 N 1 B T 16 ? OP2 ? B T 7 OP2 186 1 N 1 B T 16 ? "O5'" ? B T 7 "O5'" 187 1 N 1 B T 16 ? "C5'" ? B T 7 "C5'" 188 1 N 1 B T 16 ? "C4'" ? B T 7 "C4'" 189 1 N 1 B T 16 ? "O4'" ? B T 7 "O4'" 190 1 N 1 B T 16 ? "C3'" ? B T 7 "C3'" 191 1 N 1 B T 16 ? "O3'" ? B T 7 "O3'" 192 1 N 1 B T 16 ? "C2'" ? B T 7 "C2'" 193 1 N 1 B T 16 ? "C1'" ? B T 7 "C1'" 194 1 N 1 B T 16 ? C7 ? B T 7 C7 195 1 N 1 B C 17 ? OP3 ? B C 8 OP3 196 1 N 1 B C 17 ? OP1 ? B C 8 OP1 197 1 N 1 B C 17 ? OP2 ? B C 8 OP2 198 1 N 1 B C 17 ? "O5'" ? B C 8 "O5'" 199 1 N 1 B C 17 ? "C5'" ? B C 8 "C5'" 200 1 N 1 B C 17 ? "C4'" ? B C 8 "C4'" 201 1 N 1 B C 17 ? "O4'" ? B C 8 "O4'" 202 1 N 1 B C 17 ? "C3'" ? B C 8 "C3'" 203 1 N 1 B C 17 ? "O3'" ? B C 8 "O3'" 204 1 N 1 B C 17 ? "C2'" ? B C 8 "C2'" 205 1 N 1 B C 17 ? "O2'" ? B C 8 "O2'" 206 1 N 1 B C 17 ? "C1'" ? B C 8 "C1'" 207 1 N 1 B G 18 ? OP3 ? B G 9 OP3 208 1 N 1 B G 18 ? OP1 ? B G 9 OP1 209 1 N 1 B G 18 ? OP2 ? B G 9 OP2 210 1 N 1 B G 18 ? "O5'" ? B G 9 "O5'" 211 1 N 1 B G 18 ? "C5'" ? B G 9 "C5'" 212 1 N 1 B G 18 ? "C4'" ? B G 9 "C4'" 213 1 N 1 B G 18 ? "O4'" ? B G 9 "O4'" 214 1 N 1 B G 18 ? "C3'" ? B G 9 "C3'" 215 1 N 1 B G 18 ? "O3'" ? B G 9 "O3'" 216 1 N 1 B G 18 ? "C2'" ? B G 9 "C2'" 217 1 N 1 B G 18 ? "O2'" ? B G 9 "O2'" 218 1 N 1 B G 18 ? "C1'" ? B G 9 "C1'" # _ndb_struct_conf_na.entry_id 475D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C . 1_555 B G . 1_555 0.178 -0.121 0.055 -0.015 0.000 -1.280 1 A_C2:G18_B A 2 ? B 18 ? 19 1 1 A G . 1_555 B C . 1_555 -0.337 -0.170 -0.025 3.923 0.000 -1.972 2 A_G3:C17_B A 3 ? B 17 ? 19 1 1 A A . 1_555 B T . 1_555 0.023 -0.117 0.065 11.391 0.000 0.384 3 A_A4:T16_B A 4 ? B 16 ? 20 1 1 A A . 1_555 B T . 1_555 0.001 -0.108 0.051 3.288 0.000 2.886 4 A_A5:T15_B A 5 ? B 15 ? 20 1 1 A T . 1_555 B A . 1_555 -0.024 -0.100 0.140 -2.374 0.000 5.617 5 A_T6:A14_B A 6 ? B 14 ? 20 1 1 A T . 1_555 B A . 1_555 -0.121 -0.150 -0.065 -8.114 0.000 1.084 6 A_T7:A13_B A 7 ? B 13 ? 20 1 1 A C . 1_555 B G . 1_555 0.258 -0.148 -0.178 -2.706 0.000 0.644 7 A_C8:G12_B A 8 ? B 12 ? 19 1 1 A G . 1_555 B C . 1_555 -0.262 -0.116 0.156 2.920 0.000 0.229 8 A_G9:C11_B A 9 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C . 1_555 B G . 1_555 A G . 1_555 B C . 1_555 0.858 0.978 3.208 2.283 5.813 29.371 0.669 -1.179 3.390 11.304 -4.439 30.013 1 AA_C2G3:C17G18_BB A 2 ? B 18 ? A 3 ? B 17 ? 1 A G . 1_555 B C . 1_555 A A . 1_555 B T . 1_555 -0.822 1.344 3.228 -0.949 4.222 37.823 1.518 1.139 3.372 6.487 1.458 38.061 2 AA_G3A4:T16C17_BB A 3 ? B 17 ? A 4 ? B 16 ? 1 A A . 1_555 B T . 1_555 A A . 1_555 B T . 1_555 0.372 -0.399 3.386 -0.727 2.050 38.624 -0.862 -0.654 3.354 3.096 1.097 38.682 3 AA_A4A5:T15T16_BB A 4 ? B 16 ? A 5 ? B 15 ? 1 A A . 1_555 B T . 1_555 A T . 1_555 B A . 1_555 0.165 -0.622 3.324 -0.062 -0.122 31.110 -1.137 -0.320 3.326 -0.227 0.115 31.110 4 AA_A5T6:A14T15_BB A 5 ? B 15 ? A 6 ? B 14 ? 1 A T . 1_555 B A . 1_555 A T . 1_555 B A . 1_555 -0.454 -0.216 3.285 2.980 2.328 37.861 -0.627 1.074 3.223 3.577 -4.578 38.042 5 AA_T6T7:A13A14_BB A 6 ? B 14 ? A 7 ? B 13 ? 1 A T . 1_555 B A . 1_555 A C . 1_555 B G . 1_555 1.051 1.292 3.258 1.094 -0.626 39.431 1.988 -1.428 3.265 -0.927 -1.621 39.451 6 AA_T7C8:G12A13_BB A 7 ? B 13 ? A 8 ? B 12 ? 1 A C . 1_555 B G . 1_555 A G . 1_555 B C . 1_555 -1.537 0.906 3.222 -5.077 5.398 30.228 0.607 1.848 3.532 10.160 9.556 31.102 7 AA_C8G9:C11G12_BB A 8 ? B 12 ? A 9 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 1 ;DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3') ; G 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 'SODIUM ION' NA 5 water HOH #