data_477D # _entry.id 477D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 477D pdb_0000477d 10.2210/pdb477d/pdb NDB BD0019 ? ? RCSB RCSB009236 ? ? WWPDB D_1000009236 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_symmetry' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_symmetry' 40 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 477D _pdbx_database_status.recvd_initial_deposition_date 1999-06-25 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Minasov, G.' 1 'Tereshko, V.' 2 'Egli, M.' 3 # _citation.id primary _citation.title 'Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 291 _citation.page_first 83 _citation.page_last 99 _citation.year 1999 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10438608 _citation.pdbx_database_id_DOI 10.1006/jmbi.1999.2934 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Minasov, G.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Egli, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'" 3703.416 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DG 1 13 13 DG G B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 112 112 CA CA A . D 2 CA 1 120 120 CA CA A . E 2 CA 1 101 101 CA CA B . F 2 CA 1 146 146 CA CA B . G 3 HOH 1 114 114 HOH HOH A . G 3 HOH 2 115 115 HOH HOH A . G 3 HOH 3 116 116 HOH HOH A . G 3 HOH 4 117 117 HOH HOH A . G 3 HOH 5 118 118 HOH HOH A . G 3 HOH 6 119 119 HOH HOH A . G 3 HOH 7 121 121 HOH HOH A . G 3 HOH 8 124 124 HOH HOH A . G 3 HOH 9 128 128 HOH HOH A . G 3 HOH 10 131 131 HOH HOH A . G 3 HOH 11 134 134 HOH HOH A . G 3 HOH 12 135 135 HOH HOH A . G 3 HOH 13 137 137 HOH HOH A . G 3 HOH 14 140 140 HOH HOH A . G 3 HOH 15 142 142 HOH HOH A . G 3 HOH 16 143 143 HOH HOH A . G 3 HOH 17 144 144 HOH HOH A . G 3 HOH 18 145 145 HOH HOH A . G 3 HOH 19 147 147 HOH HOH A . G 3 HOH 20 148 148 HOH HOH A . G 3 HOH 21 150 150 HOH HOH A . G 3 HOH 22 151 151 HOH HOH A . G 3 HOH 23 152 152 HOH HOH A . G 3 HOH 24 154 154 HOH HOH A . G 3 HOH 25 159 159 HOH HOH A . G 3 HOH 26 161 161 HOH HOH A . G 3 HOH 27 165 165 HOH HOH A . G 3 HOH 28 166 166 HOH HOH A . G 3 HOH 29 167 167 HOH HOH A . G 3 HOH 30 173 173 HOH HOH A . G 3 HOH 31 176 176 HOH HOH A . G 3 HOH 32 178 178 HOH HOH A . G 3 HOH 33 183 183 HOH HOH A . G 3 HOH 34 187 187 HOH HOH A . G 3 HOH 35 188 188 HOH HOH A . G 3 HOH 36 196 196 HOH HOH A . G 3 HOH 37 197 197 HOH HOH A . G 3 HOH 38 199 199 HOH HOH A . G 3 HOH 39 200 200 HOH HOH A . G 3 HOH 40 203 203 HOH HOH A . G 3 HOH 41 205 205 HOH HOH A . G 3 HOH 42 211 211 HOH HOH A . G 3 HOH 43 213 213 HOH HOH A . G 3 HOH 44 215 215 HOH HOH A . G 3 HOH 45 217 217 HOH HOH A . G 3 HOH 46 218 218 HOH HOH A . G 3 HOH 47 221 221 HOH HOH A . G 3 HOH 48 225 225 HOH HOH A . G 3 HOH 49 228 228 HOH HOH A . G 3 HOH 50 233 233 HOH HOH A . G 3 HOH 51 237 237 HOH HOH A . G 3 HOH 52 239 239 HOH HOH A . G 3 HOH 53 240 240 HOH HOH A . G 3 HOH 54 241 241 HOH HOH A . G 3 HOH 55 242 242 HOH HOH A . G 3 HOH 56 243 243 HOH HOH A . G 3 HOH 57 246 246 HOH HOH A . G 3 HOH 58 248 248 HOH HOH A . G 3 HOH 59 249 249 HOH HOH A . G 3 HOH 60 250 250 HOH HOH A . G 3 HOH 61 256 256 HOH HOH A . G 3 HOH 62 260 260 HOH HOH A . G 3 HOH 63 263 263 HOH HOH A . G 3 HOH 64 264 264 HOH HOH A . G 3 HOH 65 265 265 HOH HOH A . G 3 HOH 66 267 267 HOH HOH A . G 3 HOH 67 268 268 HOH HOH A . G 3 HOH 68 272 272 HOH HOH A . G 3 HOH 69 274 274 HOH HOH A . G 3 HOH 70 275 275 HOH HOH A . G 3 HOH 71 276 276 HOH HOH A . G 3 HOH 72 277 277 HOH HOH A . G 3 HOH 73 279 279 HOH HOH A . G 3 HOH 74 280 280 HOH HOH A . G 3 HOH 75 284 284 HOH HOH A . G 3 HOH 76 291 291 HOH HOH A . G 3 HOH 77 294 294 HOH HOH A . G 3 HOH 78 299 299 HOH HOH A . G 3 HOH 79 302 302 HOH HOH A . G 3 HOH 80 303 303 HOH HOH A . G 3 HOH 81 304 304 HOH HOH A . G 3 HOH 82 305 305 HOH HOH A . H 3 HOH 1 102 102 HOH HOH B . H 3 HOH 2 106 106 HOH HOH B . H 3 HOH 3 113 113 HOH HOH B . H 3 HOH 4 123 123 HOH HOH B . H 3 HOH 5 126 126 HOH HOH B . H 3 HOH 6 130 130 HOH HOH B . H 3 HOH 7 132 132 HOH HOH B . H 3 HOH 8 139 139 HOH HOH B . H 3 HOH 9 153 153 HOH HOH B . H 3 HOH 10 155 155 HOH HOH B . H 3 HOH 11 156 156 HOH HOH B . H 3 HOH 12 157 157 HOH HOH B . H 3 HOH 13 160 160 HOH HOH B . H 3 HOH 14 163 163 HOH HOH B . H 3 HOH 15 170 170 HOH HOH B . H 3 HOH 16 171 171 HOH HOH B . H 3 HOH 17 175 175 HOH HOH B . H 3 HOH 18 177 177 HOH HOH B . H 3 HOH 19 182 182 HOH HOH B . H 3 HOH 20 184 184 HOH HOH B . H 3 HOH 21 186 186 HOH HOH B . H 3 HOH 22 195 195 HOH HOH B . H 3 HOH 23 202 202 HOH HOH B . H 3 HOH 24 207 207 HOH HOH B . H 3 HOH 25 214 214 HOH HOH B . H 3 HOH 26 222 222 HOH HOH B . H 3 HOH 27 230 230 HOH HOH B . H 3 HOH 28 231 231 HOH HOH B . H 3 HOH 29 232 232 HOH HOH B . H 3 HOH 30 234 234 HOH HOH B . H 3 HOH 31 235 235 HOH HOH B . H 3 HOH 32 236 236 HOH HOH B . H 3 HOH 33 238 238 HOH HOH B . H 3 HOH 34 244 244 HOH HOH B . H 3 HOH 35 245 245 HOH HOH B . H 3 HOH 36 252 252 HOH HOH B . H 3 HOH 37 253 253 HOH HOH B . H 3 HOH 38 254 254 HOH HOH B . H 3 HOH 39 255 255 HOH HOH B . H 3 HOH 40 257 257 HOH HOH B . H 3 HOH 41 258 258 HOH HOH B . H 3 HOH 42 259 259 HOH HOH B . H 3 HOH 43 262 262 HOH HOH B . H 3 HOH 44 266 266 HOH HOH B . H 3 HOH 45 269 269 HOH HOH B . H 3 HOH 46 270 270 HOH HOH B . H 3 HOH 47 271 271 HOH HOH B . H 3 HOH 48 278 278 HOH HOH B . H 3 HOH 49 281 281 HOH HOH B . H 3 HOH 50 282 282 HOH HOH B . H 3 HOH 51 283 283 HOH HOH B . H 3 HOH 52 286 286 HOH HOH B . H 3 HOH 53 287 287 HOH HOH B . H 3 HOH 54 288 288 HOH HOH B . H 3 HOH 55 289 289 HOH HOH B . H 3 HOH 56 290 290 HOH HOH B . H 3 HOH 57 292 292 HOH HOH B . H 3 HOH 58 295 295 HOH HOH B . H 3 HOH 59 297 297 HOH HOH B . H 3 HOH 60 306 306 HOH HOH B . H 3 HOH 61 307 307 HOH HOH B . H 3 HOH 62 308 308 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 1 A DG 1 ? "C5'" ? A DG 1 "C5'" 3 1 Y 1 A DG 1 ? "C4'" ? A DG 1 "C4'" 4 1 Y 1 A DG 1 ? "O4'" ? A DG 1 "O4'" 5 1 Y 1 A DG 1 ? "C3'" ? A DG 1 "C3'" 6 1 Y 1 A DG 1 ? "C2'" ? A DG 1 "C2'" 7 1 Y 1 A DG 1 ? "C1'" ? A DG 1 "C1'" 8 1 Y 1 A DG 1 ? N9 ? A DG 1 N9 9 1 Y 1 A DG 1 ? C8 ? A DG 1 C8 10 1 Y 1 A DG 1 ? N7 ? A DG 1 N7 11 1 Y 1 A DG 1 ? C5 ? A DG 1 C5 12 1 Y 1 A DG 1 ? C6 ? A DG 1 C6 13 1 Y 1 A DG 1 ? O6 ? A DG 1 O6 14 1 Y 1 A DG 1 ? N1 ? A DG 1 N1 15 1 Y 1 A DG 1 ? C2 ? A DG 1 C2 16 1 Y 1 A DG 1 ? N2 ? A DG 1 N2 17 1 Y 1 A DG 1 ? N3 ? A DG 1 N3 18 1 Y 1 A DG 1 ? C4 ? A DG 1 C4 19 1 Y 1 B DG 13 ? "O5'" ? B DG 1 "O5'" 20 1 Y 1 B DG 13 ? "C5'" ? B DG 1 "C5'" 21 1 Y 1 B DG 13 ? "C4'" ? B DG 1 "C4'" 22 1 Y 1 B DG 13 ? "O4'" ? B DG 1 "O4'" 23 1 Y 1 B DG 13 ? "C3'" ? B DG 1 "C3'" 24 1 Y 1 B DG 13 ? "C2'" ? B DG 1 "C2'" 25 1 Y 1 B DG 13 ? "C1'" ? B DG 1 "C1'" 26 1 Y 1 B DG 13 ? N9 ? B DG 1 N9 27 1 Y 1 B DG 13 ? C8 ? B DG 1 C8 28 1 Y 1 B DG 13 ? N7 ? B DG 1 N7 29 1 Y 1 B DG 13 ? C5 ? B DG 1 C5 30 1 Y 1 B DG 13 ? C6 ? B DG 1 C6 31 1 Y 1 B DG 13 ? O6 ? B DG 1 O6 32 1 Y 1 B DG 13 ? N1 ? B DG 1 N1 33 1 Y 1 B DG 13 ? C2 ? B DG 1 C2 34 1 Y 1 B DG 13 ? N2 ? B DG 1 N2 35 1 Y 1 B DG 13 ? N3 ? B DG 1 N3 36 1 Y 1 B DG 13 ? C4 ? B DG 1 C4 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 477D _cell.length_a 41.990 _cell.length_b 41.990 _cell.length_c 99.550 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 477D _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 146 # _exptl.entry_id 477D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.73 _exptl_crystal.density_Matthews 2.19 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details ;SITTING DROPS CONTAIN 1.0 MM SINGLE STRAND OLIGONUCLEOTIDE,20 MM SODIUM CACODYLATE BUFFER PH 6.9, 10-40 MM CALCIUM CLORIDE,AGAINST RESERVOIR OF 40% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 CACL2 ? ? ? 1 3 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-05-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99503 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 0.99503 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 477D _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 23.0 _reflns.d_resolution_high 1.70 _reflns.number_obs 7036 _reflns.number_all 7036 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.0500000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.3460000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 477D _refine.ls_number_reflns_obs 6228 _refine.ls_number_reflns_all 6230 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 86.3 _refine.ls_R_factor_obs 0.1940000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1940000 _refine.ls_R_factor_R_free 0.2350000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 642 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 456 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 611 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.10 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 477D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 477D _struct.title 'CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 477D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA DODECAMER, CALCIUM FORM, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 477D _struct_ref.pdbx_db_accession 477D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 477D A 1 ? 12 ? 477D 1 ? 12 ? 1 12 2 1 477D B 1 ? 12 ? 477D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 5 OP1 ? ? ? 1_555 D CA . CA ? ? A DA 5 A CA 120 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc2 metalc ? ? A DA 5 OP1 ? ? ? 2_645 D CA . CA ? ? A DA 5 A CA 120 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc3 metalc ? ? A DA 5 OP1 ? ? ? 3_765 D CA . CA ? ? A DA 5 A CA 120 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc4 metalc ? ? A DG 12 OP1 ? ? ? 6_665 E CA . CA ? ? A DG 12 B CA 101 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc5 metalc ? ? A DG 12 O6 ? ? ? 4_445 E CA . CA ? ? A DG 12 B CA 101 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 114 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 115 1_555 ? ? ? ? ? ? ? 2.402 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 116 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 117 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 118 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 112 A HOH 119 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 112 B HOH 113 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 120 A HOH 121 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 120 A HOH 121 3_765 ? ? ? ? ? ? ? 2.478 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 120 A HOH 121 2_645 ? ? ? ? ? ? ? 2.481 ? ? metalc16 metalc ? ? G HOH . O ? ? ? 4_445 E CA . CA ? ? A HOH 144 B CA 101 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc17 metalc ? ? B DG 12 OP1 ? ? ? 1_555 E CA . CA ? ? B DG 24 B CA 101 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 101 B HOH 102 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc19 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 146 B HOH 186 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 146 B HOH 282 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 146 B HOH 283 1_555 ? ? ? ? ? ? ? 2.187 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 2_645 92.8 ? 2 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 3_765 92.7 ? 3 OP1 ? A DA 5 ? A DA 5 ? 2_645 CA ? D CA . ? A CA 120 ? 1_555 OP1 ? A DA 5 ? A DA 5 ? 3_765 92.9 ? 4 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 80.8 ? 5 OP1 ? A DA 5 ? A DA 5 ? 2_645 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 170.6 ? 6 OP1 ? A DA 5 ? A DA 5 ? 3_765 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 94.3 ? 7 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 3_765 170.6 ? 8 OP1 ? A DA 5 ? A DA 5 ? 2_645 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 3_765 94.5 ? 9 OP1 ? A DA 5 ? A DA 5 ? 3_765 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 3_765 81.0 ? 10 O ? G HOH . ? A HOH 121 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 3_765 92.6 ? 11 OP1 ? A DA 5 ? A DA 5 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 2_645 94.3 ? 12 OP1 ? A DA 5 ? A DA 5 ? 2_645 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 2_645 81.0 ? 13 OP1 ? A DA 5 ? A DA 5 ? 3_765 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 2_645 170.9 ? 14 O ? G HOH . ? A HOH 121 ? 1_555 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 2_645 92.5 ? 15 O ? G HOH . ? A HOH 121 ? 3_765 CA ? D CA . ? A CA 120 ? 1_555 O ? G HOH . ? A HOH 121 ? 2_645 92.7 ? 16 OP1 ? A DG 12 ? A DG 12 ? 6_665 CA ? E CA . ? B CA 101 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 4_445 91.3 ? 17 OP1 ? A DG 12 ? A DG 12 ? 6_665 CA ? E CA . ? B CA 101 ? 1_555 O ? G HOH . ? A HOH 144 ? 4_445 74.4 ? 18 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? E CA . ? B CA 101 ? 1_555 O ? G HOH . ? A HOH 144 ? 4_445 76.8 ? 19 OP1 ? A DG 12 ? A DG 12 ? 6_665 CA ? E CA . ? B CA 101 ? 1_555 OP1 ? B DG 12 ? B DG 24 ? 1_555 106.0 ? 20 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? E CA . ? B CA 101 ? 1_555 OP1 ? B DG 12 ? B DG 24 ? 1_555 158.0 ? 21 O ? G HOH . ? A HOH 144 ? 4_445 CA ? E CA . ? B CA 101 ? 1_555 OP1 ? B DG 12 ? B DG 24 ? 1_555 94.6 ? 22 OP1 ? A DG 12 ? A DG 12 ? 6_665 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 102 ? 1_555 96.1 ? 23 O6 ? A DG 12 ? A DG 12 ? 4_445 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 102 ? 1_555 98.0 ? 24 O ? G HOH . ? A HOH 144 ? 4_445 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 102 ? 1_555 168.9 ? 25 OP1 ? B DG 12 ? B DG 24 ? 1_555 CA ? E CA . ? B CA 101 ? 1_555 O ? H HOH . ? B HOH 102 ? 1_555 93.6 ? 26 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 115 ? 1_555 144.5 ? 27 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 116 ? 1_555 75.1 ? 28 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 116 ? 1_555 140.4 ? 29 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 83.0 ? 30 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 93.0 ? 31 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 117 ? 1_555 95.0 ? 32 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 75.7 ? 33 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 70.1 ? 34 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 145.8 ? 35 O ? G HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 118 ? 1_555 98.5 ? 36 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 143.2 ? 37 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 70.6 ? 38 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 71.6 ? 39 O ? G HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 84.8 ? 40 O ? G HOH . ? A HOH 118 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 140.6 ? 41 O ? G HOH . ? A HOH 114 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 95.5 ? 42 O ? G HOH . ? A HOH 115 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 91.6 ? 43 O ? G HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 78.9 ? 44 O ? G HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 173.9 ? 45 O ? G HOH . ? A HOH 118 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 86.8 ? 46 O ? G HOH . ? A HOH 119 ? 1_555 CA ? C CA . ? A CA 112 ? 1_555 O ? H HOH . ? B HOH 113 ? 1_555 93.0 ? 47 O ? H HOH . ? B HOH 186 ? 1_555 CA ? F CA . ? B CA 146 ? 1_555 O ? H HOH . ? B HOH 282 ? 1_555 69.0 ? 48 O ? H HOH . ? B HOH 186 ? 1_555 CA ? F CA . ? B CA 146 ? 1_555 O ? H HOH . ? B HOH 283 ? 1_555 91.7 ? 49 O ? H HOH . ? B HOH 282 ? 1_555 CA ? F CA . ? B CA 146 ? 1_555 O ? H HOH . ? B HOH 283 ? 1_555 96.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CA 101 ? 5 'BINDING SITE FOR RESIDUE CA B 101' AC2 Software A CA 112 ? 7 'BINDING SITE FOR RESIDUE CA A 112' AC3 Software A CA 120 ? 6 'BINDING SITE FOR RESIDUE CA A 120' AC4 Software B CA 146 ? 3 'BINDING SITE FOR RESIDUE CA B 146' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 12 ? DG A 12 . ? 4_445 ? 2 AC1 5 DG A 12 ? DG A 12 . ? 6_665 ? 3 AC1 5 HOH G . ? HOH A 144 . ? 4_445 ? 4 AC1 5 DG B 12 ? DG B 24 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 102 . ? 1_555 ? 6 AC2 7 HOH G . ? HOH A 114 . ? 1_555 ? 7 AC2 7 HOH G . ? HOH A 115 . ? 1_555 ? 8 AC2 7 HOH G . ? HOH A 116 . ? 1_555 ? 9 AC2 7 HOH G . ? HOH A 117 . ? 1_555 ? 10 AC2 7 HOH G . ? HOH A 118 . ? 1_555 ? 11 AC2 7 HOH G . ? HOH A 119 . ? 1_555 ? 12 AC2 7 HOH H . ? HOH B 113 . ? 1_555 ? 13 AC3 6 DA A 5 ? DA A 5 . ? 2_645 ? 14 AC3 6 DA A 5 ? DA A 5 . ? 3_765 ? 15 AC3 6 DA A 5 ? DA A 5 . ? 1_555 ? 16 AC3 6 HOH G . ? HOH A 121 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 121 . ? 2_645 ? 18 AC3 6 HOH G . ? HOH A 121 . ? 3_765 ? 19 AC4 3 HOH H . ? HOH B 186 . ? 1_555 ? 20 AC4 3 HOH H . ? HOH B 282 . ? 1_555 ? 21 AC4 3 HOH H . ? HOH B 283 . ? 1_555 ? # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.089 'SIDE CHAIN' 2 1 DG B 14 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 120 ? D CA . 2 1 A HOH 243 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 477D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 11 1_555 -0.334 -0.158 0.066 -11.801 -0.609 -2.280 1 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.153 -0.162 0.135 -4.921 1.660 -1.418 2 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.343 -0.133 -0.238 5.770 -16.643 1.576 3 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.070 -0.080 -0.202 7.884 -11.293 3.753 4 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.015 -0.088 -0.193 1.169 -12.611 3.796 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.189 -0.068 -0.067 3.238 -16.518 7.065 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.075 -0.017 -0.032 -0.314 -14.692 4.371 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.385 -0.081 0.219 -14.399 -11.381 3.090 8 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.476 -0.115 0.228 1.624 1.858 1.350 9 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.375 -0.070 0.079 10.898 0.345 -0.497 10 A_DC11:DG14_B A 11 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.829 0.357 3.225 -0.398 -5.330 36.201 1.286 -1.374 3.134 -8.521 0.637 36.580 1 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.322 0.788 3.174 3.725 8.726 26.034 -0.475 1.580 3.191 18.601 -7.940 27.681 2 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.161 0.038 3.118 -2.218 2.026 38.184 -0.184 -0.020 3.120 3.091 3.385 38.298 3 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.301 0.006 3.312 -1.558 -0.594 39.219 0.080 0.260 3.321 -0.885 2.320 39.253 4 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.004 -0.438 3.191 -0.140 -2.256 36.266 -0.394 -0.025 3.212 -3.620 0.225 36.334 5 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.243 -0.098 3.285 0.999 -0.143 35.278 -0.141 -0.251 3.291 -0.236 -1.648 35.292 6 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.124 -0.025 3.572 -1.770 1.165 40.918 -0.174 -0.389 3.562 1.665 2.530 40.970 7 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.229 0.745 3.026 -1.675 6.188 24.235 -0.027 -1.001 3.095 14.418 3.903 25.056 8 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.822 0.467 3.249 0.138 -6.403 38.884 1.438 1.236 3.133 -9.539 -0.206 39.387 9 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? # _atom_sites.entry_id 477D _atom_sites.fract_transf_matrix[1][1] 0.023815 _atom_sites.fract_transf_matrix[1][2] 0.013750 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010045 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_