data_479D
# 
_entry.id   479D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   479D         pdb_0000479d 10.2210/pdb479d/pdb 
NDB   AH0005       ?            ?                   
RCSB  RCSB001326   ?            ?                   
WWPDB D_1000001326 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2000-05-15 
2 'Structure model' 1 1 2008-04-26 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-04 
5 'Structure model' 1 4 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 4 'Structure model' 'Structure summary'         
5 5 'Structure model' 'Data collection'           
6 5 'Structure model' 'Database references'       
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software        
2 4 'Structure model' struct_keywords 
3 5 'Structure model' chem_comp_atom  
4 5 'Structure model' chem_comp_bond  
5 5 'Structure model' database_2      
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_struct_keywords.text'               
2 5 'Structure model' '_database_2.pdbx_DOI'                
3 5 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        479D 
_pdbx_database_status.recvd_initial_deposition_date   1999-07-08 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Xiong, Y.'         1 
'Sundaralingam, M.' 2 
# 
_citation.id                        primary 
_citation.title                     
;Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC).
;
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            28 
_citation.page_first                2171 
_citation.page_last                 2176 
_citation.year                      2000 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   10773088 
_citation.pdbx_database_id_DOI      10.1093/nar/28.10.2171 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Xiong, Y.'         1 ? 
primary 'Sundaralingam, M.' 2 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3')
;
2632.734 1  ? ? ? ? 
2 polymer syn 
;RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3')
;
2981.895 1  ? ? ? ? 
3 water   nat water                                       18.015   37 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no '(DC)(DT)(DC)(DT)(DT)(DC)(DT)(DT)(DC)' CTCTTCTTC A ? 
2 polyribonucleotide      no no GAAGAAGAG                              GAAGAAGAG B ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DT n 
1 3 DC n 
1 4 DT n 
1 5 DT n 
1 6 DC n 
1 7 DT n 
1 8 DT n 
1 9 DC n 
2 1 G  n 
2 2 A  n 
2 3 A  n 
2 4 G  n 
2 5 A  n 
2 6 A  n 
2 7 G  n 
2 8 A  n 
2 9 G  n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"        ? 'C10 H14 N5 O7 P' 347.221 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'  307.197 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"        ? 'C10 H15 N2 O8 P' 322.208 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"        ? 'C10 H14 N5 O8 P' 363.221 
HOH non-polymer   . WATER                               ? 'H2 O'            18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1  1  DC C A . n 
A 1 2 DT 2 2  2  DT T A . n 
A 1 3 DC 3 3  3  DC C A . n 
A 1 4 DT 4 4  4  DT T A . n 
A 1 5 DT 5 5  5  DT T A . n 
A 1 6 DC 6 6  6  DC C A . n 
A 1 7 DT 7 7  7  DT T A . n 
A 1 8 DT 8 8  8  DT T A . n 
A 1 9 DC 9 9  9  DC C A . n 
B 2 1 G  1 10 10 G  G B . n 
B 2 2 A  2 11 11 A  A B . n 
B 2 3 A  3 12 12 A  A B . n 
B 2 4 G  4 13 13 G  G B . n 
B 2 5 A  5 14 14 A  A B . n 
B 2 6 A  6 15 15 A  A B . n 
B 2 7 G  7 16 16 G  G B . n 
B 2 8 A  8 17 17 A  A B . n 
B 2 9 G  9 18 18 G  G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 3 HOH 1  20 20 HOH HOH A . 
C 3 HOH 2  21 21 HOH HOH A . 
C 3 HOH 3  22 22 HOH HOH A . 
C 3 HOH 4  24 24 HOH HOH A . 
C 3 HOH 5  26 26 HOH HOH A . 
C 3 HOH 6  30 30 HOH HOH A . 
C 3 HOH 7  33 33 HOH HOH A . 
C 3 HOH 8  39 39 HOH HOH A . 
C 3 HOH 9  42 42 HOH HOH A . 
C 3 HOH 10 45 45 HOH HOH A . 
C 3 HOH 11 47 47 HOH HOH A . 
C 3 HOH 12 53 53 HOH HOH A . 
C 3 HOH 13 54 54 HOH HOH A . 
D 3 HOH 1  19 19 HOH HOH B . 
D 3 HOH 2  23 23 HOH HOH B . 
D 3 HOH 3  25 25 HOH HOH B . 
D 3 HOH 4  27 27 HOH HOH B . 
D 3 HOH 5  28 28 HOH HOH B . 
D 3 HOH 6  29 29 HOH HOH B . 
D 3 HOH 7  31 31 HOH HOH B . 
D 3 HOH 8  32 32 HOH HOH B . 
D 3 HOH 9  34 34 HOH HOH B . 
D 3 HOH 10 35 35 HOH HOH B . 
D 3 HOH 11 36 36 HOH HOH B . 
D 3 HOH 12 37 37 HOH HOH B . 
D 3 HOH 13 38 38 HOH HOH B . 
D 3 HOH 14 40 40 HOH HOH B . 
D 3 HOH 15 41 41 HOH HOH B . 
D 3 HOH 16 43 43 HOH HOH B . 
D 3 HOH 17 44 44 HOH HOH B . 
D 3 HOH 18 46 46 HOH HOH B . 
D 3 HOH 19 48 48 HOH HOH B . 
D 3 HOH 20 49 49 HOH HOH B . 
D 3 HOH 21 50 50 HOH HOH B . 
D 3 HOH 22 51 51 HOH HOH B . 
D 3 HOH 23 52 52 HOH HOH B . 
D 3 HOH 24 55 55 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' .     ? 1 
X-PLOR refinement       3.851 ? 2 
DENZO  'data reduction' .     ? 3 
X-PLOR phasing          .     ? 4 
# 
_cell.entry_id           479D 
_cell.length_a           49.15 
_cell.length_b           49.15 
_cell.length_c           46.13 
_cell.angle_alpha        90.0 
_cell.angle_beta         90.0 
_cell.angle_gamma        120.00 
_cell.Z_PDB              6 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         479D 
_symmetry.space_group_name_H-M             'P 61' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     hexagonal 
_symmetry.Int_Tables_number                169 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          479D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   57.06 
_exptl_crystal.density_Matthews      2.86 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.0 
_exptl_crystal_grow.pdbx_details    
;DROP: 1 MM HYBID (DOUBLE STRAND), 400 MM MGCL2, 0.10 M SODIUM CACODYLATE (PH 6.0), 2MM SPERMINE TETRACHLORIDE, 5% MPD; RESERVOIR: 40 % MPD, VAPOR DIFFUSION, HANGING DROP
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 MGCL2                    ? ? ? 
1 2 1 'SODIUM CACODYLATE'      ? ? ? 
1 3 1 'SPERMINE TETRACHLORIDE' ? ? ? 
1 4 1 MPD                      ? ? ? 
1 5 2 MPD                      ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           263 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1998-12-15 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    GRAPHITE 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        RIGAKU 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     479D 
_reflns.observed_criterion_sigma_I   1 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             31.38 
_reflns.d_resolution_high            1.90 
_reflns.number_obs                   4443 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         87.9 
_reflns.pdbx_Rmerge_I_obs            0.0610000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              3.50 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 479D 
_refine.ls_number_reflns_obs                     4373 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.0 
_refine.ls_d_res_high                            1.9 
_refine.ls_percent_reflns_obs                    87.84 
_refine.ls_R_factor_obs                          0.1990000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.1990000 
_refine.ls_R_factor_R_free                       0.2620000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5 
_refine.ls_number_reflns_R_free                  208 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               'LUZZATI PLOT' 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        479D 
_refine_analyze.Luzzati_coordinate_error_obs    0.31 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           10.0 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   372 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             37 
_refine_hist.number_atoms_total               409 
_refine_hist.d_res_high                       1.9 
_refine_hist.d_res_low                        10.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             0.008 ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          479D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  479D 
_struct.title                     'CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        479D 
_struct_keywords.pdbx_keywords   'DNA-RNA HYBRID' 
_struct_keywords.text            'A-T-RNA, DOUBLE HELIX, DNA/RNA HYBRID, DNA-RNA HYBRID complex, DNA-RNA HYBRID' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 3 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_db_isoform 
1 1 PDB 479D 479D ? ? ? 
2 2 PDB 479D 479D ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 479D A 1 ? 9 ? 479D 1  ? 9  ? 1  9  
2 2 479D B 1 ? 9 ? 479D 10 ? 18 ? 10 18 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 B G 9 N1 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 B G 9 O6 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 B G 9 N2 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DT 2 N3 ? ? ? 1_555 B A 8 N1 ? ? A DT 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DT 2 O4 ? ? ? 1_555 B A 8 N6 ? ? A DT 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DC 3 N3 ? ? ? 1_555 B G 7 N1 ? ? A DC 3 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DC 3 N4 ? ? ? 1_555 B G 7 O6 ? ? A DC 3 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 3 O2 ? ? ? 1_555 B G 7 N2 ? ? A DC 3 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DT 4 N3 ? ? ? 1_555 B A 6 N1 ? ? A DT 4 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B A 6 N6 ? ? A DT 4 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B A 5 N1 ? ? A DT 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B A 5 N6 ? ? A DT 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G 4 N1 ? ? A DC 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G 4 O6 ? ? A DC 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G 4 N2 ? ? A DC 6 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B A 3 N1 ? ? A DT 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B A 3 N6 ? ? A DT 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B A 2 N1 ? ? A DT 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B A 2 N6 ? ? A DT 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A   OP3    O N N 1   
A   P      P N N 2   
A   OP1    O N N 3   
A   OP2    O N N 4   
A   "O5'"  O N N 5   
A   "C5'"  C N N 6   
A   "C4'"  C N R 7   
A   "O4'"  O N N 8   
A   "C3'"  C N S 9   
A   "O3'"  O N N 10  
A   "C2'"  C N R 11  
A   "O2'"  O N N 12  
A   "C1'"  C N R 13  
A   N9     N Y N 14  
A   C8     C Y N 15  
A   N7     N Y N 16  
A   C5     C Y N 17  
A   C6     C Y N 18  
A   N6     N N N 19  
A   N1     N Y N 20  
A   C2     C Y N 21  
A   N3     N Y N 22  
A   C4     C Y N 23  
A   HOP3   H N N 24  
A   HOP2   H N N 25  
A   "H5'"  H N N 26  
A   "H5''" H N N 27  
A   "H4'"  H N N 28  
A   "H3'"  H N N 29  
A   "HO3'" H N N 30  
A   "H2'"  H N N 31  
A   "HO2'" H N N 32  
A   "H1'"  H N N 33  
A   H8     H N N 34  
A   H61    H N N 35  
A   H62    H N N 36  
A   H2     H N N 37  
DC  OP3    O N N 38  
DC  P      P N N 39  
DC  OP1    O N N 40  
DC  OP2    O N N 41  
DC  "O5'"  O N N 42  
DC  "C5'"  C N N 43  
DC  "C4'"  C N R 44  
DC  "O4'"  O N N 45  
DC  "C3'"  C N S 46  
DC  "O3'"  O N N 47  
DC  "C2'"  C N N 48  
DC  "C1'"  C N R 49  
DC  N1     N N N 50  
DC  C2     C N N 51  
DC  O2     O N N 52  
DC  N3     N N N 53  
DC  C4     C N N 54  
DC  N4     N N N 55  
DC  C5     C N N 56  
DC  C6     C N N 57  
DC  HOP3   H N N 58  
DC  HOP2   H N N 59  
DC  "H5'"  H N N 60  
DC  "H5''" H N N 61  
DC  "H4'"  H N N 62  
DC  "H3'"  H N N 63  
DC  "HO3'" H N N 64  
DC  "H2'"  H N N 65  
DC  "H2''" H N N 66  
DC  "H1'"  H N N 67  
DC  H41    H N N 68  
DC  H42    H N N 69  
DC  H5     H N N 70  
DC  H6     H N N 71  
DT  OP3    O N N 72  
DT  P      P N N 73  
DT  OP1    O N N 74  
DT  OP2    O N N 75  
DT  "O5'"  O N N 76  
DT  "C5'"  C N N 77  
DT  "C4'"  C N R 78  
DT  "O4'"  O N N 79  
DT  "C3'"  C N S 80  
DT  "O3'"  O N N 81  
DT  "C2'"  C N N 82  
DT  "C1'"  C N R 83  
DT  N1     N N N 84  
DT  C2     C N N 85  
DT  O2     O N N 86  
DT  N3     N N N 87  
DT  C4     C N N 88  
DT  O4     O N N 89  
DT  C5     C N N 90  
DT  C7     C N N 91  
DT  C6     C N N 92  
DT  HOP3   H N N 93  
DT  HOP2   H N N 94  
DT  "H5'"  H N N 95  
DT  "H5''" H N N 96  
DT  "H4'"  H N N 97  
DT  "H3'"  H N N 98  
DT  "HO3'" H N N 99  
DT  "H2'"  H N N 100 
DT  "H2''" H N N 101 
DT  "H1'"  H N N 102 
DT  H3     H N N 103 
DT  H71    H N N 104 
DT  H72    H N N 105 
DT  H73    H N N 106 
DT  H6     H N N 107 
G   OP3    O N N 108 
G   P      P N N 109 
G   OP1    O N N 110 
G   OP2    O N N 111 
G   "O5'"  O N N 112 
G   "C5'"  C N N 113 
G   "C4'"  C N R 114 
G   "O4'"  O N N 115 
G   "C3'"  C N S 116 
G   "O3'"  O N N 117 
G   "C2'"  C N R 118 
G   "O2'"  O N N 119 
G   "C1'"  C N R 120 
G   N9     N Y N 121 
G   C8     C Y N 122 
G   N7     N Y N 123 
G   C5     C Y N 124 
G   C6     C N N 125 
G   O6     O N N 126 
G   N1     N N N 127 
G   C2     C N N 128 
G   N2     N N N 129 
G   N3     N N N 130 
G   C4     C Y N 131 
G   HOP3   H N N 132 
G   HOP2   H N N 133 
G   "H5'"  H N N 134 
G   "H5''" H N N 135 
G   "H4'"  H N N 136 
G   "H3'"  H N N 137 
G   "HO3'" H N N 138 
G   "H2'"  H N N 139 
G   "HO2'" H N N 140 
G   "H1'"  H N N 141 
G   H8     H N N 142 
G   H1     H N N 143 
G   H21    H N N 144 
G   H22    H N N 145 
HOH O      O N N 146 
HOH H1     H N N 147 
HOH H2     H N N 148 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A   OP3   P      sing N N 1   
A   OP3   HOP3   sing N N 2   
A   P     OP1    doub N N 3   
A   P     OP2    sing N N 4   
A   P     "O5'"  sing N N 5   
A   OP2   HOP2   sing N N 6   
A   "O5'" "C5'"  sing N N 7   
A   "C5'" "C4'"  sing N N 8   
A   "C5'" "H5'"  sing N N 9   
A   "C5'" "H5''" sing N N 10  
A   "C4'" "O4'"  sing N N 11  
A   "C4'" "C3'"  sing N N 12  
A   "C4'" "H4'"  sing N N 13  
A   "O4'" "C1'"  sing N N 14  
A   "C3'" "O3'"  sing N N 15  
A   "C3'" "C2'"  sing N N 16  
A   "C3'" "H3'"  sing N N 17  
A   "O3'" "HO3'" sing N N 18  
A   "C2'" "O2'"  sing N N 19  
A   "C2'" "C1'"  sing N N 20  
A   "C2'" "H2'"  sing N N 21  
A   "O2'" "HO2'" sing N N 22  
A   "C1'" N9     sing N N 23  
A   "C1'" "H1'"  sing N N 24  
A   N9    C8     sing Y N 25  
A   N9    C4     sing Y N 26  
A   C8    N7     doub Y N 27  
A   C8    H8     sing N N 28  
A   N7    C5     sing Y N 29  
A   C5    C6     sing Y N 30  
A   C5    C4     doub Y N 31  
A   C6    N6     sing N N 32  
A   C6    N1     doub Y N 33  
A   N6    H61    sing N N 34  
A   N6    H62    sing N N 35  
A   N1    C2     sing Y N 36  
A   C2    N3     doub Y N 37  
A   C2    H2     sing N N 38  
A   N3    C4     sing Y N 39  
DC  OP3   P      sing N N 40  
DC  OP3   HOP3   sing N N 41  
DC  P     OP1    doub N N 42  
DC  P     OP2    sing N N 43  
DC  P     "O5'"  sing N N 44  
DC  OP2   HOP2   sing N N 45  
DC  "O5'" "C5'"  sing N N 46  
DC  "C5'" "C4'"  sing N N 47  
DC  "C5'" "H5'"  sing N N 48  
DC  "C5'" "H5''" sing N N 49  
DC  "C4'" "O4'"  sing N N 50  
DC  "C4'" "C3'"  sing N N 51  
DC  "C4'" "H4'"  sing N N 52  
DC  "O4'" "C1'"  sing N N 53  
DC  "C3'" "O3'"  sing N N 54  
DC  "C3'" "C2'"  sing N N 55  
DC  "C3'" "H3'"  sing N N 56  
DC  "O3'" "HO3'" sing N N 57  
DC  "C2'" "C1'"  sing N N 58  
DC  "C2'" "H2'"  sing N N 59  
DC  "C2'" "H2''" sing N N 60  
DC  "C1'" N1     sing N N 61  
DC  "C1'" "H1'"  sing N N 62  
DC  N1    C2     sing N N 63  
DC  N1    C6     sing N N 64  
DC  C2    O2     doub N N 65  
DC  C2    N3     sing N N 66  
DC  N3    C4     doub N N 67  
DC  C4    N4     sing N N 68  
DC  C4    C5     sing N N 69  
DC  N4    H41    sing N N 70  
DC  N4    H42    sing N N 71  
DC  C5    C6     doub N N 72  
DC  C5    H5     sing N N 73  
DC  C6    H6     sing N N 74  
DT  OP3   P      sing N N 75  
DT  OP3   HOP3   sing N N 76  
DT  P     OP1    doub N N 77  
DT  P     OP2    sing N N 78  
DT  P     "O5'"  sing N N 79  
DT  OP2   HOP2   sing N N 80  
DT  "O5'" "C5'"  sing N N 81  
DT  "C5'" "C4'"  sing N N 82  
DT  "C5'" "H5'"  sing N N 83  
DT  "C5'" "H5''" sing N N 84  
DT  "C4'" "O4'"  sing N N 85  
DT  "C4'" "C3'"  sing N N 86  
DT  "C4'" "H4'"  sing N N 87  
DT  "O4'" "C1'"  sing N N 88  
DT  "C3'" "O3'"  sing N N 89  
DT  "C3'" "C2'"  sing N N 90  
DT  "C3'" "H3'"  sing N N 91  
DT  "O3'" "HO3'" sing N N 92  
DT  "C2'" "C1'"  sing N N 93  
DT  "C2'" "H2'"  sing N N 94  
DT  "C2'" "H2''" sing N N 95  
DT  "C1'" N1     sing N N 96  
DT  "C1'" "H1'"  sing N N 97  
DT  N1    C2     sing N N 98  
DT  N1    C6     sing N N 99  
DT  C2    O2     doub N N 100 
DT  C2    N3     sing N N 101 
DT  N3    C4     sing N N 102 
DT  N3    H3     sing N N 103 
DT  C4    O4     doub N N 104 
DT  C4    C5     sing N N 105 
DT  C5    C7     sing N N 106 
DT  C5    C6     doub N N 107 
DT  C7    H71    sing N N 108 
DT  C7    H72    sing N N 109 
DT  C7    H73    sing N N 110 
DT  C6    H6     sing N N 111 
G   OP3   P      sing N N 112 
G   OP3   HOP3   sing N N 113 
G   P     OP1    doub N N 114 
G   P     OP2    sing N N 115 
G   P     "O5'"  sing N N 116 
G   OP2   HOP2   sing N N 117 
G   "O5'" "C5'"  sing N N 118 
G   "C5'" "C4'"  sing N N 119 
G   "C5'" "H5'"  sing N N 120 
G   "C5'" "H5''" sing N N 121 
G   "C4'" "O4'"  sing N N 122 
G   "C4'" "C3'"  sing N N 123 
G   "C4'" "H4'"  sing N N 124 
G   "O4'" "C1'"  sing N N 125 
G   "C3'" "O3'"  sing N N 126 
G   "C3'" "C2'"  sing N N 127 
G   "C3'" "H3'"  sing N N 128 
G   "O3'" "HO3'" sing N N 129 
G   "C2'" "O2'"  sing N N 130 
G   "C2'" "C1'"  sing N N 131 
G   "C2'" "H2'"  sing N N 132 
G   "O2'" "HO2'" sing N N 133 
G   "C1'" N9     sing N N 134 
G   "C1'" "H1'"  sing N N 135 
G   N9    C8     sing Y N 136 
G   N9    C4     sing Y N 137 
G   C8    N7     doub Y N 138 
G   C8    H8     sing N N 139 
G   N7    C5     sing Y N 140 
G   C5    C6     sing N N 141 
G   C5    C4     doub Y N 142 
G   C6    O6     doub N N 143 
G   C6    N1     sing N N 144 
G   N1    C2     sing N N 145 
G   N1    H1     sing N N 146 
G   C2    N2     sing N N 147 
G   C2    N3     doub N N 148 
G   N2    H21    sing N N 149 
G   N2    H22    sing N N 150 
G   N3    C4     sing N N 151 
HOH O     H1     sing N N 152 
HOH O     H2     sing N N 153 
# 
_ndb_struct_conf_na.entry_id   479D 
_ndb_struct_conf_na.feature    'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 B G 9 1_555 0.311  -0.236 -0.038 -6.011 3.182   4.100  1 A_DC1:G18_B A 1 ? B 18 ? 19 1 
1 A DT 2 1_555 B A 8 1_555 -0.228 -0.242 -0.402 2.142  -7.774  -2.412 2 A_DT2:A17_B A 2 ? B 17 ? 20 1 
1 A DC 3 1_555 B G 7 1_555 0.059  -0.207 -0.001 0.699  -11.145 2.787  3 A_DC3:G16_B A 3 ? B 16 ? 19 1 
1 A DT 4 1_555 B A 6 1_555 0.191  -0.253 0.085  -0.071 -9.511  3.264  4 A_DT4:A15_B A 4 ? B 15 ? 20 1 
1 A DT 5 1_555 B A 5 1_555 -0.316 -0.207 -0.256 12.747 -6.429  -1.197 5 A_DT5:A14_B A 5 ? B 14 ? 20 1 
1 A DC 6 1_555 B G 4 1_555 0.483  -0.260 -0.241 13.473 -12.927 -2.711 6 A_DC6:G13_B A 6 ? B 13 ? 19 1 
1 A DT 7 1_555 B A 3 1_555 0.102  -0.243 -0.194 8.117  -14.959 5.710  7 A_DT7:A12_B A 7 ? B 12 ? 20 1 
1 A DT 8 1_555 B A 2 1_555 -0.263 0.008  -0.067 2.801  -18.099 3.649  8 A_DT8:A11_B A 8 ? B 11 ? 20 1 
1 A DC 9 1_555 B G 1 1_555 0.176  -0.351 -0.348 4.531  -11.772 1.241  9 A_DC9:G10_B A 9 ? B 10 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B G 9 1_555 A DT 2 1_555 B A 8 1_555 -1.057 -1.770 3.202 1.708  0.776  25.744 -4.171 2.823  3.073 1.738  -3.827 
25.811 1 AA_DC1DT2:A17G18_BB A 1 ? B 18 ? A 2 ? B 17 ? 
1 A DT 2 1_555 B A 8 1_555 A DC 3 1_555 B G 7 1_555 1.161  -1.565 3.290 1.398  8.528  36.272 -3.535 -1.640 2.902 13.464 -2.207 
37.253 2 AA_DT2DC3:G16A17_BB A 2 ? B 17 ? A 3 ? B 16 ? 
1 A DC 3 1_555 B G 7 1_555 A DT 4 1_555 B A 6 1_555 -0.167 -1.740 3.546 0.553  4.942  27.579 -4.806 0.481  3.188 10.261 -1.147 
28.016 3 AA_DC3DT4:A15G16_BB A 3 ? B 16 ? A 4 ? B 15 ? 
1 A DT 4 1_555 B A 6 1_555 A DT 5 1_555 B A 5 1_555 -0.494 -1.373 3.057 0.047  3.433  25.349 -3.986 1.129  2.848 7.777  -0.107 
25.577 4 AA_DT4DT5:A14A15_BB A 4 ? B 15 ? A 5 ? B 14 ? 
1 A DT 5 1_555 B A 5 1_555 A DC 6 1_555 B G 4 1_555 -0.906 -1.481 3.400 -3.229 14.871 34.073 -4.227 1.005  2.623 23.953 5.201  
37.224 5 AA_DT5DC6:G13A14_BB A 5 ? B 14 ? A 6 ? B 13 ? 
1 A DC 6 1_555 B G 4 1_555 A DT 7 1_555 B A 3 1_555 1.158  -1.267 3.435 2.956  11.240 34.450 -3.618 -1.442 2.976 18.343 -4.823 
36.302 6 AA_DC6DT7:A12G13_BB A 6 ? B 13 ? A 7 ? B 12 ? 
1 A DT 7 1_555 B A 3 1_555 A DT 8 1_555 B A 2 1_555 -0.361 -1.312 3.555 0.270  5.306  29.245 -3.729 0.763  3.268 10.400 -0.530 
29.714 7 AA_DT7DT8:A11A12_BB A 7 ? B 12 ? A 8 ? B 11 ? 
1 A DT 8 1_555 B A 2 1_555 A DC 9 1_555 B G 1 1_555 -0.353 -0.949 3.279 -0.504 5.466  35.708 -2.289 0.500  3.109 8.849  0.815  
36.114 8 AA_DT8DC9:G10A11_BB A 8 ? B 11 ? A 9 ? B 10 ? 
# 
_atom_sites.entry_id                    479D 
_atom_sites.fract_transf_matrix[1][1]   0.020346 
_atom_sites.fract_transf_matrix[1][2]   0.011747 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023493 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021678 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_