HEADER CELL ADHESION 12-SEP-11 4A0Q TITLE ACTIVATED CONFORMATION OF INTEGRIN ALPHA1 I-DOMAIN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: INTEGRIN ALPHA1 I-DOMAIN, RESIDUES 166-366; COMPND 5 SYNONYM: CD49 ANTIGEN-LIKE FAMILY MEMBER A, LAMININ AND COLLAGEN COMPND 6 RECEPTOR, VLA-1, CD49A; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS INTEGRIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.LAHTI,E.BLIGT,H.NISKANEN,V.PARKASH,A.-M.BRANDT,J.JOKINEN, AUTHOR 2 P.PATRIKAINEN,J.KAPYLA,J.HEINO,T.A.SALMINEN REVDAT 3 20-DEC-23 4A0Q 1 REMARK LINK REVDAT 2 28-DEC-11 4A0Q 1 JRNL REVDAT 1 26-OCT-11 4A0Q 0 JRNL AUTH M.LAHTI,E.BLIGT,H.NISKANEN,V.PARKASH,A.M.BRANDT,J.JOKINEN, JRNL AUTH 2 P.PATRIKAINEN,J.KAPYLA,J.HEINO,T.A.SALMINEN JRNL TITL STRUCTURE OF COLLAGEN RECEPTOR INTEGRIN APLHA1I DOMAIN JRNL TITL 2 CARRYING THE ACTIVATING MUTATION E317A. JRNL REF J.BIOL.CHEM. V. 286 43343 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 22030389 JRNL DOI 10.1074/JBC.M111.261909 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2992 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4036 ; 1.461 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;34.656 ;24.928 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;15.918 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;10.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2202 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1872 ; 1.807 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3028 ; 2.812 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1120 ; 4.134 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1008 ; 6.451 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4A0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1PT6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.6 M REMARK 280 TRI-SODIUM CITRATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 167 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 167 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 345 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 345 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 138 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 THR A 141 REMARK 465 ASN A 286 REMARK 465 ARG A 287 REMARK 465 GLY A 288 REMARK 465 ASN A 289 REMARK 465 LEU A 290 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 ALA A 336 REMARK 465 THR A 337 REMARK 465 ALA A 338 REMARK 465 GLU B 138 REMARK 465 SER B 139 REMARK 465 SER B 140 REMARK 465 THR B 141 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 ALA B 336 REMARK 465 THR B 337 REMARK 465 ALA B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 242 NE CZ NH1 NH2 REMARK 470 ARG B 242 NE CZ NH1 NH2 REMARK 470 ASP B 253 O REMARK 470 ASN B 286 CG OD1 ND2 REMARK 470 ARG B 287 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 LEU B 290 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 172 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 178 -136.49 -125.51 REMARK 500 MET A 221 47.45 -108.65 REMARK 500 PHE A 234 45.96 -91.27 REMARK 500 ASN A 273 43.28 38.27 REMARK 500 GLN B 178 -132.34 -117.99 REMARK 500 MET B 221 47.85 -105.74 REMARK 500 PHE B 234 38.10 -88.54 REMARK 500 HIS B 260 -56.03 118.34 REMARK 500 ASN B 286 -60.42 74.44 REMARK 500 LEU B 290 -139.09 168.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 152 OG REMARK 620 2 SER A 154 OG 100.2 REMARK 620 3 HOH A2004 O 75.7 92.9 REMARK 620 4 HOH A2006 O 89.1 93.5 164.4 REMARK 620 5 HOH A2071 O 142.8 117.0 100.1 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 152 OG REMARK 620 2 SER B 154 OG 102.9 REMARK 620 3 HOH B2004 O 82.4 89.9 REMARK 620 4 HOH B2006 O 87.7 93.3 170.0 REMARK 620 5 HOH B2062 O 144.7 112.3 97.3 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PT6 RELATED DB: PDB REMARK 900 I DOMAIN FROM HUMAN INTEGRIN ALPHA1-BETA1 REMARK 900 RELATED ID: 1QCY RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE I-DOMAIN OF HUMAN INTEGRINALPHA1BETA1 REMARK 900 RELATED ID: 1QC5 RELATED DB: PDB REMARK 900 I DOMAIN FROM INTEGRIN ALPHA1-BETA1 DBREF 4A0Q A 138 338 UNP P56199 ITA1_HUMAN 166 366 DBREF 4A0Q B 138 338 UNP P56199 ITA1_HUMAN 166 366 SEQADV 4A0Q SER A 139 UNP P56199 CYS 167 ENGINEERED MUTATION SEQADV 4A0Q THR A 226 UNP P56199 ILE 254 CONFLICT SEQADV 4A0Q ALA A 317 UNP P56199 GLU 345 ENGINEERED MUTATION SEQADV 4A0Q SER B 139 UNP P56199 CYS 167 ENGINEERED MUTATION SEQADV 4A0Q THR B 226 UNP P56199 ILE 254 CONFLICT SEQADV 4A0Q ALA B 317 UNP P56199 GLU 345 ENGINEERED MUTATION SEQRES 1 A 201 GLU SER SER THR GLN LEU ASP ILE VAL ILE VAL LEU ASP SEQRES 2 A 201 GLY SER ASN SER ILE TYR PRO TRP ASP SER VAL THR ALA SEQRES 3 A 201 PHE LEU ASN ASP LEU LEU GLU ARG MET ASP ILE GLY PRO SEQRES 4 A 201 LYS GLN THR GLN VAL GLY ILE VAL GLN TYR GLY GLU ASN SEQRES 5 A 201 VAL THR HIS GLU PHE ASN LEU ASN LYS TYR SER SER THR SEQRES 6 A 201 GLU GLU VAL LEU VAL ALA ALA LYS LYS ILE VAL GLN ARG SEQRES 7 A 201 GLY GLY ARG GLN THR MET THR ALA LEU GLY THR ASP THR SEQRES 8 A 201 ALA ARG LYS GLU ALA PHE THR GLU ALA ARG GLY ALA ARG SEQRES 9 A 201 ARG GLY VAL LYS LYS VAL MET VAL ILE VAL THR ASP GLY SEQRES 10 A 201 GLU SER HIS ASP ASN HIS ARG LEU LYS LYS VAL ILE GLN SEQRES 11 A 201 ASP CYS GLU ASP GLU ASN ILE GLN ARG PHE SER ILE ALA SEQRES 12 A 201 ILE LEU GLY SER TYR ASN ARG GLY ASN LEU SER THR GLU SEQRES 13 A 201 LYS PHE VAL GLU GLU ILE LYS SER ILE ALA SER GLU PRO SEQRES 14 A 201 THR GLU LYS HIS PHE PHE ASN VAL SER ASP ALA LEU ALA SEQRES 15 A 201 LEU VAL THR ILE VAL LYS THR LEU GLY GLU ARG ILE PHE SEQRES 16 A 201 ALA LEU GLU ALA THR ALA SEQRES 1 B 201 GLU SER SER THR GLN LEU ASP ILE VAL ILE VAL LEU ASP SEQRES 2 B 201 GLY SER ASN SER ILE TYR PRO TRP ASP SER VAL THR ALA SEQRES 3 B 201 PHE LEU ASN ASP LEU LEU GLU ARG MET ASP ILE GLY PRO SEQRES 4 B 201 LYS GLN THR GLN VAL GLY ILE VAL GLN TYR GLY GLU ASN SEQRES 5 B 201 VAL THR HIS GLU PHE ASN LEU ASN LYS TYR SER SER THR SEQRES 6 B 201 GLU GLU VAL LEU VAL ALA ALA LYS LYS ILE VAL GLN ARG SEQRES 7 B 201 GLY GLY ARG GLN THR MET THR ALA LEU GLY THR ASP THR SEQRES 8 B 201 ALA ARG LYS GLU ALA PHE THR GLU ALA ARG GLY ALA ARG SEQRES 9 B 201 ARG GLY VAL LYS LYS VAL MET VAL ILE VAL THR ASP GLY SEQRES 10 B 201 GLU SER HIS ASP ASN HIS ARG LEU LYS LYS VAL ILE GLN SEQRES 11 B 201 ASP CYS GLU ASP GLU ASN ILE GLN ARG PHE SER ILE ALA SEQRES 12 B 201 ILE LEU GLY SER TYR ASN ARG GLY ASN LEU SER THR GLU SEQRES 13 B 201 LYS PHE VAL GLU GLU ILE LYS SER ILE ALA SER GLU PRO SEQRES 14 B 201 THR GLU LYS HIS PHE PHE ASN VAL SER ASP ALA LEU ALA SEQRES 15 B 201 LEU VAL THR ILE VAL LYS THR LEU GLY GLU ARG ILE PHE SEQRES 16 B 201 ALA LEU GLU ALA THR ALA HET MG A 400 1 HET MG B 400 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *184(H2 O) HELIX 1 1 PRO A 157 GLU A 170 1 14 HELIX 2 2 SER A 201 LYS A 211 1 11 HELIX 3 3 MET A 221 GLU A 232 1 12 HELIX 4 4 THR A 235 GLY A 239 5 5 HELIX 5 5 ASP A 258 HIS A 260 5 3 HELIX 6 6 ARG A 261 GLU A 272 1 12 HELIX 7 7 SER A 291 ALA A 303 1 13 HELIX 8 8 PRO A 306 HIS A 310 1 5 HELIX 9 9 ASP A 316 THR A 322 5 7 HELIX 10 10 ILE A 323 PHE A 332 1 10 HELIX 11 11 PRO B 157 GLU B 170 1 14 HELIX 12 12 SER B 201 LYS B 211 1 11 HELIX 13 13 MET B 221 GLU B 232 1 12 HELIX 14 14 THR B 235 GLY B 239 5 5 HELIX 15 15 HIS B 260 GLU B 272 1 13 HELIX 16 16 SER B 291 ALA B 303 1 13 HELIX 17 17 PRO B 306 HIS B 310 1 5 HELIX 18 18 ASP B 316 THR B 322 5 7 HELIX 19 19 ILE B 323 ALA B 333 1 11 SHEET 1 AA 6 VAL A 190 PHE A 194 0 SHEET 2 AA 6 THR A 179 TYR A 186 -1 O ILE A 183 N GLU A 193 SHEET 3 AA 6 LEU A 143 ASP A 150 1 O LEU A 143 N GLN A 180 SHEET 4 AA 6 LYS A 245 THR A 252 1 O LYS A 245 N ASP A 144 SHEET 5 AA 6 ILE A 274 ILE A 281 1 O GLN A 275 N MET A 248 SHEET 6 AA 6 PHE A 311 VAL A 314 1 O PHE A 312 N ALA A 280 SHEET 1 BA 6 VAL B 190 PHE B 194 0 SHEET 2 BA 6 GLN B 180 TYR B 186 -1 O ILE B 183 N GLU B 193 SHEET 3 BA 6 LEU B 143 ASP B 150 1 O LEU B 143 N GLN B 180 SHEET 4 BA 6 LYS B 245 THR B 252 1 O LYS B 245 N ASP B 144 SHEET 5 BA 6 GLN B 275 ILE B 281 1 O GLN B 275 N MET B 248 SHEET 6 BA 6 PHE B 311 VAL B 314 1 O PHE B 312 N ALA B 280 LINK OG SER A 152 MG MG A 400 1555 1555 2.35 LINK OG SER A 154 MG MG A 400 1555 1555 2.30 LINK MG MG A 400 O HOH A2004 1555 1555 2.31 LINK MG MG A 400 O HOH A2006 1555 1555 2.54 LINK MG MG A 400 O HOH A2071 1555 1555 2.28 LINK OG SER B 152 MG MG B 400 1555 1555 2.39 LINK OG SER B 154 MG MG B 400 1555 1555 2.37 LINK MG MG B 400 O HOH B2004 1555 1555 2.37 LINK MG MG B 400 O HOH B2006 1555 1555 2.52 LINK MG MG B 400 O HOH B2062 1555 1555 2.35 CISPEP 1 TYR A 156 PRO A 157 0 -5.23 CISPEP 2 GLU A 305 PRO A 306 0 -1.87 CISPEP 3 TYR B 156 PRO B 157 0 -2.61 CISPEP 4 GLU B 305 PRO B 306 0 0.49 SITE 1 AC1 5 SER A 152 SER A 154 HOH A2004 HOH A2006 SITE 2 AC1 5 HOH A2071 SITE 1 AC2 5 SER B 152 SER B 154 HOH B2004 HOH B2006 SITE 2 AC2 5 HOH B2062 CRYST1 95.470 95.470 37.719 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010474 0.006047 0.000000 0.00000 SCALE2 0.000000 0.012095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026512 0.00000