HEADER TRANSCRIPTION 13-SEP-11 4A0X TITLE STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR FAPR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FATTY ACID AND PHOSPHOLIPID BIOSYNTHESIS REGULATOR, COMPND 5 REPRESSOR FACTOR FAPR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS TRANSCRIPTION, LIPID HOMEOSTASIS EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBANESI,M.E.GUERIN,A.BUSCHIAZZO,D.DE MENDOZA,P.M.ALZARI REVDAT 3 20-DEC-23 4A0X 1 REMARK LINK REVDAT 2 23-JAN-13 4A0X 1 JRNL REVDAT 1 26-SEP-12 4A0X 0 JRNL AUTH D.ALBANESI,G.REH,M.E.GUERIN,F.SCHAEFFER,M.DEBARBOUILLE, JRNL AUTH 2 A.BUSCHIAZZO,G.E.SCHUJMAN,D.DE MENDOZA,P.M.ALZARI JRNL TITL STRUCTURAL BASIS FOR FEED-FORWARD TRANSCRIPTIONAL REGULATION JRNL TITL 2 OF MEMBRANE LIPID HOMEOSTASIS IN STAPHYLOCOCCUS AUREUS. JRNL REF PLOS PATHOG. V. 9 3108 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23300457 JRNL DOI 10.1371/JOURNAL.PPAT.1003108 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : -0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1502 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2034 ; 1.638 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 5.922 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;30.477 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;15.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.547 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1121 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 925 ; 0.449 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 0.873 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 577 ; 1.457 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 537 ; 2.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -44.0720 -20.7080 45.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.5494 REMARK 3 T33: 0.2849 T12: -0.0924 REMARK 3 T13: -0.0322 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.7738 L22: 0.3620 REMARK 3 L33: 10.0257 L12: -0.3849 REMARK 3 L13: 1.7293 L23: 0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.6508 S13: -0.1440 REMARK 3 S21: 0.0899 S22: -0.1364 S23: 0.0314 REMARK 3 S31: -0.0153 S32: -0.9972 S33: 0.1629 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): -32.1340 -26.6530 26.9000 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.1766 REMARK 3 T33: 0.0836 T12: -0.0190 REMARK 3 T13: -0.0318 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 4.4084 L22: 5.5310 REMARK 3 L33: 3.2010 L12: 0.6920 REMARK 3 L13: -0.5883 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.2212 S13: 0.2013 REMARK 3 S21: 0.0200 S22: 0.0821 S23: -0.2431 REMARK 3 S31: -0.1515 S32: 0.3313 S33: -0.0652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2F3X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG-8000, 0.1M MES, 0.2 M ZN REMARK 280 ACETATE, PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.29000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.65375 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.07667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.29000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.65375 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.07667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.29000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.65375 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.07667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.29000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.65375 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.07667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.29000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.65375 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.07667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.29000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.65375 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.07667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.30749 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 82.15333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.30749 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 82.15333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.30749 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 82.15333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.30749 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.15333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.30749 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 82.15333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.30749 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 82.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -974.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -116.58000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -67.30749 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.07667 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 -116.58000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -67.30749 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 41.07667 REMARK 350 BIOMT1 5 -0.500000 0.866025 0.000000 -58.29000 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 -100.96124 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 -58.29000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 33.65375 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 41.07667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLY A 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 10 CE NZ REMARK 470 LYS A 12 CE NZ REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 LYS A 162 CD CE NZ REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 89 -62.10 -128.31 REMARK 500 ASN A 147 -4.50 80.90 REMARK 500 HIS A 174 11.22 59.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 30 NE2 REMARK 620 2 ASP A 34 OD2 73.8 REMARK 620 3 HOH A2002 O 75.9 90.6 REMARK 620 4 HOH A2003 O 70.7 78.6 146.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 HIS A 174 NE2 91.9 REMARK 620 3 HOH A2004 O 69.1 64.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE2 REMARK 620 2 GLU A 74 OE2 91.3 REMARK 620 3 GLU A 75 OE1 97.6 77.4 REMARK 620 4 GLU A 75 OE2 109.1 127.7 53.1 REMARK 620 5 HIS A 104 ND1 114.5 116.6 143.6 98.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 ACT A 211 OXT 88.3 REMARK 620 3 ACT A 211 O 92.7 128.6 REMARK 620 4 ACT A 211 OXT 112.7 83.5 49.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 134 ND1 REMARK 620 2 HIS A 163 NE2 129.0 REMARK 620 3 HOH A2020 O 113.0 107.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A0Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4A0Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH MALONYL-COA REMARK 900 RELATED ID: 4A12 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH DNA OPERATOR DBREF 4A0X A 1 190 UNP D6UB50 D6UB50_STAAU 1 190 SEQRES 1 A 190 MET ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 A 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 A 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 A 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 A 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 A 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 A 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 A 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 A 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 A 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 A 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 A 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 A 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 A 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 A 190 LYS MET PHE TYR ASP LYS ARG GLY HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET ACT A 211 4 HET ACT A 212 4 HET MES A 221 12 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 ZN 5(ZN 2+) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 MES C6 H13 N O4 S FORMUL 10 HOH *20(H2 O) HELIX 1 1 LYS A 9 ASN A 24 1 16 HELIX 2 2 THR A 28 GLN A 37 1 10 HELIX 3 3 SER A 39 ASN A 51 1 13 HELIX 4 4 GLU A 54 TYR A 67 1 14 HELIX 5 5 ASP A 68 ILE A 70 5 3 HELIX 6 6 GLU A 74 PHE A 78 5 5 HELIX 7 7 THR A 98 SER A 101 5 4 HELIX 8 8 ARG A 110 ILE A 126 1 17 SHEET 1 AA 6 ASP A 81 ASN A 86 0 SHEET 2 AA 6 LYS A 90 ASP A 96 -1 O LYS A 90 N ASN A 86 SHEET 3 AA 6 THR A 149 GLN A 159 -1 O VAL A 150 N LEU A 95 SHEET 4 AA 6 HIS A 163 VAL A 172 -1 O TYR A 165 N VAL A 157 SHEET 5 AA 6 THR A 175 ASP A 187 -1 O THR A 175 N VAL A 172 SHEET 6 AA 6 THR A 130 PHE A 140 -1 O THR A 130 N ASP A 187 LINK NE2 HIS A 30 ZN ZN A 205 1555 1555 2.52 LINK OE2 GLU A 31 ZN ZN A 204 1555 1555 1.95 LINK OD2 ASP A 34 ZN ZN A 205 1555 1555 2.32 LINK OE2 GLU A 64 ZN ZN A 201 1555 1555 2.03 LINK OE2 GLU A 74 ZN ZN A 201 10455 1555 2.06 LINK OE1 GLU A 75 ZN ZN A 201 1555 1555 2.66 LINK OE2 GLU A 75 ZN ZN A 201 1555 1555 2.09 LINK ND1 HIS A 104 ZN ZN A 201 2455 1555 2.21 LINK NE2 HIS A 112 ZN ZN A 202 1555 1555 2.23 LINK ND1 HIS A 134 ZN ZN A 203 1555 1555 2.04 LINK NE2 HIS A 163 ZN ZN A 203 1555 1555 2.29 LINK NE2 HIS A 174 ZN ZN A 204 1555 1555 2.27 LINK ZN ZN A 202 OXT ACT A 211 1555 11445 1.90 LINK ZN ZN A 202 O ACT A 211 1555 1555 1.77 LINK ZN ZN A 202 OXT ACT A 211 11445 1555 1.90 LINK ZN ZN A 203 O HOH A2020 1555 1555 2.43 LINK ZN ZN A 204 O HOH A2004 1555 1555 2.61 LINK ZN ZN A 205 O HOH A2002 1555 1555 2.49 LINK ZN ZN A 205 O HOH A2003 1555 1555 2.22 SITE 1 AC1 4 GLU A 64 GLU A 74 GLU A 75 HIS A 104 SITE 1 AC2 2 HIS A 112 ACT A 211 SITE 1 AC3 4 HIS A 134 HIS A 163 HOH A2016 HOH A2020 SITE 1 AC4 3 GLU A 31 HIS A 174 HOH A2004 SITE 1 AC5 4 HIS A 30 ASP A 34 HOH A2002 HOH A2003 SITE 1 AC6 3 HIS A 112 VAL A 113 ZN A 202 SITE 1 AC7 5 PHE A 103 ARG A 110 GLY A 111 HIS A 112 SITE 2 AC7 5 ASN A 119 SITE 1 AC8 5 TYR A 67 GLU A 75 PHE A 78 ILE A 79 SITE 2 AC8 5 GLY A 80 CRYST1 116.580 116.580 123.230 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008578 0.004952 0.000000 0.00000 SCALE2 0.000000 0.009905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008115 0.00000