HEADER TRANSCRIPTION 13-SEP-11 4A0Y TITLE STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR FAPR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FATTY ACID AND PHOSPHOLIPID BIOSYNTHESIS REGULATOR, COMPND 5 REPRESSOR FACTOR FAPR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS TRANSCRIPTION, LIPID HOMEOSTASIS EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBANESI,M.E.GUERIN,A.BUSCHIAZZO,D.DE MENDOZA,P.M.ALZARI REVDAT 3 20-DEC-23 4A0Y 1 REMARK REVDAT 2 23-JAN-13 4A0Y 1 JRNL REVDAT 1 26-SEP-12 4A0Y 0 JRNL AUTH D.ALBANESI,G.REH,M.E.GUERIN,F.SCHAEFFER,M.DEBARBOUILLE, JRNL AUTH 2 A.BUSCHIAZZO,G.E.SCHUJMAN,D.DE MENDOZA,P.M.ALZARI JRNL TITL STRUCTURAL BASIS FOR FEED-FORWARD TRANSCRIPTIONAL REGULATION JRNL TITL 2 OF MEMBRANE LIPID HOMEOSTASIS IN STAPHYLOCOCCUS AUREUS. JRNL REF PLOS PATHOG. V. 9 3108 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23300457 JRNL DOI 10.1371/JOURNAL.PPAT.1003108 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2477 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3343 ; 1.615 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.440 ;24.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;18.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1820 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 0.719 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2455 ; 1.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 2.553 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 4.372 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 71.4060 -57.1190 -17.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.3010 REMARK 3 T33: 0.0624 T12: 0.0670 REMARK 3 T13: -0.0476 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.1413 L22: 3.0517 REMARK 3 L33: 8.1552 L12: -0.3581 REMARK 3 L13: -0.8489 L23: 0.9990 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.1755 S13: -0.3841 REMARK 3 S21: 0.0648 S22: -0.1607 S23: -0.0584 REMARK 3 S31: 0.2575 S32: -0.0145 S33: 0.1947 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 189 REMARK 3 RESIDUE RANGE : B 69 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3140 -35.5790 8.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.3256 REMARK 3 T33: 0.0410 T12: 0.0253 REMARK 3 T13: -0.0189 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 1.4354 L22: 3.1760 REMARK 3 L33: 2.7574 L12: -0.6443 REMARK 3 L13: -0.3425 L23: 0.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.0897 S13: -0.1007 REMARK 3 S21: -0.0289 S22: -0.0400 S23: 0.3076 REMARK 3 S31: 0.1338 S32: 0.0035 S33: 0.0367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4A0X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NACL, 0.1 MM HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.37000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.74000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.74000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 165.78000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -95.71313 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLY A 190 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 LEU B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 ASP B 11 REMARK 465 LYS B 12 REMARK 465 ARG B 13 REMARK 465 ARG B 14 REMARK 465 GLU B 15 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 ARG B 18 REMARK 465 GLN B 19 REMARK 465 GLN B 20 REMARK 465 ILE B 21 REMARK 465 ASP B 22 REMARK 465 SER B 23 REMARK 465 ASN B 24 REMARK 465 PRO B 25 REMARK 465 PHE B 26 REMARK 465 ILE B 27 REMARK 465 THR B 28 REMARK 465 ASP B 29 REMARK 465 HIS B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 ASP B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 36 REMARK 465 GLN B 37 REMARK 465 VAL B 38 REMARK 465 SER B 39 REMARK 465 ILE B 40 REMARK 465 GLN B 41 REMARK 465 THR B 42 REMARK 465 ILE B 43 REMARK 465 ARG B 44 REMARK 465 LEU B 45 REMARK 465 ASP B 46 REMARK 465 ARG B 47 REMARK 465 THR B 48 REMARK 465 TYR B 49 REMARK 465 LEU B 50 REMARK 465 ASN B 51 REMARK 465 ILE B 52 REMARK 465 PRO B 53 REMARK 465 GLU B 54 REMARK 465 LEU B 55 REMARK 465 ARG B 56 REMARK 465 LYS B 57 REMARK 465 ARG B 58 REMARK 465 ILE B 59 REMARK 465 LYS B 60 REMARK 465 LEU B 61 REMARK 465 VAL B 62 REMARK 465 ALA B 63 REMARK 465 GLU B 64 REMARK 465 LYS B 65 REMARK 465 ASN B 66 REMARK 465 TYR B 67 REMARK 465 ASP B 68 REMARK 465 GLN B 69 REMARK 465 ILE B 70 REMARK 465 SER B 71 REMARK 465 GLY B 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CD NE CZ NH1 NH2 REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 148 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -23.21 -142.99 REMARK 500 VAL A 89 -64.37 -126.31 REMARK 500 LYS A 127 75.53 -108.72 REMARK 500 LYS A 173 -112.63 49.88 REMARK 500 LYS A 188 77.24 -102.31 REMARK 500 VAL B 89 -60.61 -124.73 REMARK 500 ASN B 147 6.14 93.65 REMARK 500 LYS B 173 -113.37 43.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1192 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A0X RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4A0Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH MALONYL-COA REMARK 900 RELATED ID: 4A12 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GLOBAL TRANSCRIPTION REGULATOR FAPR FROM REMARK 900 STAPHYLOCOCCUS AUREUS IN COMPLEX WITH DNA OPERATOR DBREF 4A0Y A 1 190 UNP D6UB50 D6UB50_STAAU 1 190 DBREF 4A0Y B 1 190 UNP D6UB50 D6UB50_STAAU 1 190 SEQRES 1 A 190 MET ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 A 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 A 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 A 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 A 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 A 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 A 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 A 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 A 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 A 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 A 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 A 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 A 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 A 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 A 190 LYS MET PHE TYR ASP LYS ARG GLY SEQRES 1 B 190 MET ARG GLY GLU THR LEU LYS LEU LYS LYS ASP LYS ARG SEQRES 2 B 190 ARG GLU ALA ILE ARG GLN GLN ILE ASP SER ASN PRO PHE SEQRES 3 B 190 ILE THR ASP HIS GLU LEU SER ASP LEU PHE GLN VAL SER SEQRES 4 B 190 ILE GLN THR ILE ARG LEU ASP ARG THR TYR LEU ASN ILE SEQRES 5 B 190 PRO GLU LEU ARG LYS ARG ILE LYS LEU VAL ALA GLU LYS SEQRES 6 B 190 ASN TYR ASP GLN ILE SER SER ILE GLU GLU GLN GLU PHE SEQRES 7 B 190 ILE GLY ASP LEU ILE GLN VAL ASN PRO ASN VAL LYS ALA SEQRES 8 B 190 GLN SER ILE LEU ASP ILE THR SER ASP SER VAL PHE HIS SEQRES 9 B 190 LYS THR GLY ILE ALA ARG GLY HIS VAL LEU PHE ALA GLN SEQRES 10 B 190 ALA ASN SER LEU CYS VAL ALA LEU ILE LYS GLN PRO THR SEQRES 11 B 190 VAL LEU THR HIS GLU SER SER ILE GLN PHE ILE GLU LYS SEQRES 12 B 190 VAL LYS LEU ASN ASP THR VAL ARG ALA GLU ALA ARG VAL SEQRES 13 B 190 VAL ASN GLN THR ALA LYS HIS TYR TYR VAL GLU VAL LYS SEQRES 14 B 190 SER TYR VAL LYS HIS THR LEU VAL PHE LYS GLY ASN PHE SEQRES 15 B 190 LYS MET PHE TYR ASP LYS ARG GLY HET CL A1190 1 HET CL A1191 1 HET CL A1192 1 HET CL A1193 1 HET CL A1194 1 HET CL A1195 1 HET CL B1190 1 HET CL B1191 1 HET CL B1192 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 9(CL 1-) FORMUL 12 HOH *52(H2 O) HELIX 1 1 LYS A 9 ASN A 24 1 16 HELIX 2 2 THR A 28 GLN A 37 1 10 HELIX 3 3 SER A 39 ASN A 51 1 13 HELIX 4 4 GLU A 54 ILE A 70 1 17 HELIX 5 5 GLU A 74 PHE A 78 5 5 HELIX 6 6 THR A 98 SER A 101 5 4 HELIX 7 7 ARG A 110 ILE A 126 1 17 HELIX 8 8 SER B 72 GLN B 76 5 5 HELIX 9 9 THR B 98 SER B 101 5 4 HELIX 10 10 ARG B 110 ILE B 126 1 17 SHEET 1 AA12 ASP A 81 ASN A 86 0 SHEET 2 AA12 LYS A 90 ASP A 96 -1 O LYS A 90 N ASN A 86 SHEET 3 AA12 THR A 149 GLN A 159 -1 O VAL A 150 N LEU A 95 SHEET 4 AA12 HIS A 163 VAL A 172 -1 O TYR A 165 N VAL A 157 SHEET 5 AA12 THR A 175 ASP A 187 -1 O THR A 175 N VAL A 172 SHEET 6 AA12 THR A 130 PHE A 140 -1 O THR A 130 N ASP A 187 SHEET 7 AA12 THR B 130 PHE B 140 -1 O HIS B 134 N PHE A 140 SHEET 8 AA12 THR B 175 ASP B 187 -1 O LYS B 179 N GLN B 139 SHEET 9 AA12 HIS B 163 VAL B 172 -1 O TYR B 164 N MET B 184 SHEET 10 AA12 THR B 149 GLN B 159 -1 O ARG B 151 N TYR B 171 SHEET 11 AA12 LYS B 90 ASP B 96 -1 O ALA B 91 N ALA B 154 SHEET 12 AA12 ASP B 81 ASN B 86 -1 O ASP B 81 N ILE B 94 SITE 1 AC1 2 LYS A 9 LYS A 12 SITE 1 AC2 3 ASN A 119 THR A 133 GLY B 111 SITE 1 AC3 2 ARG A 56 ARG B 155 SITE 1 AC4 3 THR A 28 ASP A 29 HOH A2006 SITE 1 AC5 2 ASP A 148 THR A 149 SITE 1 AC6 2 SER A 39 THR A 42 SITE 1 AC7 3 THR A 98 SER A 99 TYR B 171 SITE 1 AC8 2 GLN A 41 ASN B 88 SITE 1 AC9 5 ARG A 44 ARG A 47 THR A 48 ASN B 158 SITE 2 AC9 5 GLN B 159 CRYST1 110.520 110.520 115.110 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009048 0.005224 0.000000 0.00000 SCALE2 0.000000 0.010448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008687 0.00000