HEADER MOTOR PROTEIN 14-SEP-11 4A14 TITLE HUMAN KIF7, A KINESIN INVOLVED IN HEDGEHOG SIGNALLING COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOTOR DOMAIN, RESIDUES 8-347; COMPND 5 SYNONYM: KINESIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM20MOD KEYWDS MOTOR PROTEIN, KINESIN, MOTOR DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KLEJNOT,F.KOZIELSKI REVDAT 3 20-DEC-23 4A14 1 REMARK LINK REVDAT 2 15-FEB-12 4A14 1 TITLE JRNL REMARK REVDAT 1 25-JAN-12 4A14 0 JRNL AUTH M.KLEJNOT,F.KOZIELSKI JRNL TITL STRUCTURAL INSIGHTS INTO HUMAN KIF7, A KINESIN INVOLVED IN JRNL TITL 2 HEDGEHOG SIGNALLING. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 154 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22281744 JRNL DOI 10.1107/S0907444911053042 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4640 - 4.1106 1.00 2821 157 0.1828 0.1960 REMARK 3 2 4.1106 - 3.2640 1.00 2686 133 0.1597 0.1722 REMARK 3 3 3.2640 - 2.8518 1.00 2662 137 0.1728 0.2001 REMARK 3 4 2.8518 - 2.5913 1.00 2655 113 0.1777 0.2117 REMARK 3 5 2.5913 - 2.4056 1.00 2615 154 0.1761 0.1998 REMARK 3 6 2.4056 - 2.2638 1.00 2635 141 0.1764 0.1987 REMARK 3 7 2.2638 - 2.1505 1.00 2590 160 0.1730 0.2004 REMARK 3 8 2.1505 - 2.0569 1.00 2610 139 0.1829 0.2200 REMARK 3 9 2.0569 - 1.9777 1.00 2589 146 0.1792 0.2090 REMARK 3 10 1.9777 - 1.9095 1.00 2567 143 0.1829 0.2318 REMARK 3 11 1.9095 - 1.8498 1.00 2605 129 0.1915 0.2207 REMARK 3 12 1.8498 - 1.7970 1.00 2617 128 0.2046 0.2315 REMARK 3 13 1.7970 - 1.7497 1.00 2622 114 0.2327 0.3106 REMARK 3 14 1.7497 - 1.7070 1.00 2544 149 0.2612 0.2989 REMARK 3 15 1.7070 - 1.6682 1.00 2592 147 0.2558 0.2749 REMARK 3 16 1.6682 - 1.6327 1.00 2557 135 0.2463 0.2767 REMARK 3 17 1.6327 - 1.6000 1.00 2589 149 0.2840 0.3163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.86030 REMARK 3 B22 (A**2) : -5.28240 REMARK 3 B33 (A**2) : 0.42210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2435 REMARK 3 ANGLE : 1.547 3327 REMARK 3 CHIRALITY : 0.115 386 REMARK 3 PLANARITY : 0.008 435 REMARK 3 DIHEDRAL : 15.046 910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:60) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9421 16.5898 -7.9672 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.1601 REMARK 3 T33: 0.1568 T12: 0.0089 REMARK 3 T13: -0.0696 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.0435 L22: 2.3758 REMARK 3 L33: 2.9091 L12: -0.6976 REMARK 3 L13: 1.1319 L23: -1.7610 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0638 S13: 0.1631 REMARK 3 S21: 0.3012 S22: -0.0130 S23: -0.2473 REMARK 3 S31: -0.2313 S32: 0.0239 S33: -0.0261 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 61:76) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5881 8.3303 -11.0232 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2337 REMARK 3 T33: 0.2210 T12: 0.0450 REMARK 3 T13: 0.0317 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.2769 L22: 3.0993 REMARK 3 L33: 4.1312 L12: 1.0021 REMARK 3 L13: 1.1001 L23: 2.0939 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.1447 S13: 0.1743 REMARK 3 S21: 0.3689 S22: -0.1711 S23: 0.4185 REMARK 3 S31: -0.3471 S32: -0.4877 S33: 0.1474 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 77:135) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7239 0.7459 -15.3945 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1773 REMARK 3 T33: 0.1577 T12: 0.0306 REMARK 3 T13: -0.0122 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.7153 L22: 2.1054 REMARK 3 L33: 0.7382 L12: 0.9490 REMARK 3 L13: 0.6642 L23: 0.7387 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.0880 S13: 0.0148 REMARK 3 S21: 0.3347 S22: -0.1395 S23: 0.1607 REMARK 3 S31: -0.0635 S32: -0.1583 S33: 0.0156 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 136:165) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7388 -13.4546 -21.3780 REMARK 3 T TENSOR REMARK 3 T11: 0.1894 T22: 0.1726 REMARK 3 T33: 0.2131 T12: 0.0644 REMARK 3 T13: -0.0518 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.4593 L22: 2.8331 REMARK 3 L33: 2.3533 L12: 1.3111 REMARK 3 L13: -0.4056 L23: 0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.0279 S13: -0.4051 REMARK 3 S21: 0.2022 S22: 0.0327 S23: -0.5192 REMARK 3 S31: 0.4091 S32: 0.3482 S33: 0.1095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 166:186) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9204 -10.8313 -27.4332 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1663 REMARK 3 T33: 0.1447 T12: 0.0087 REMARK 3 T13: -0.0238 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.3375 L22: 3.1031 REMARK 3 L33: 6.1860 L12: 0.5215 REMARK 3 L13: -2.5044 L23: -0.4942 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: 0.1994 S13: 0.0050 REMARK 3 S21: -0.1486 S22: 0.0334 S23: 0.0297 REMARK 3 S31: 0.2128 S32: -0.3245 S33: -0.0164 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 187:210) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6715 -12.9558 -9.6127 REMARK 3 T TENSOR REMARK 3 T11: 0.4949 T22: 0.2225 REMARK 3 T33: 0.2351 T12: 0.0248 REMARK 3 T13: -0.1510 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.1070 L22: 5.6697 REMARK 3 L33: 5.0676 L12: 0.1125 REMARK 3 L13: 1.4149 L23: -0.7089 REMARK 3 S TENSOR REMARK 3 S11: 0.3102 S12: -0.4360 S13: -0.4075 REMARK 3 S21: 1.0184 S22: -0.0903 S23: -0.7491 REMARK 3 S31: 0.4633 S32: 0.2120 S33: -0.0456 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 211:239) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1371 -6.0586 -21.1369 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1182 REMARK 3 T33: 0.1197 T12: 0.0218 REMARK 3 T13: -0.0391 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 6.4876 L22: 4.2236 REMARK 3 L33: 3.7497 L12: 0.7347 REMARK 3 L13: 2.4628 L23: 0.4479 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.2037 S13: -0.1827 REMARK 3 S21: 0.4000 S22: -0.0264 S23: -0.0595 REMARK 3 S31: -0.0199 S32: -0.0634 S33: -0.0533 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 240:275) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8408 -0.1012 -21.3839 REMARK 3 T TENSOR REMARK 3 T11: 0.1301 T22: 0.1281 REMARK 3 T33: 0.1913 T12: 0.0185 REMARK 3 T13: -0.0432 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.2874 L22: 1.4877 REMARK 3 L33: 1.9501 L12: -0.1465 REMARK 3 L13: 0.8526 L23: 0.3003 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: 0.0555 S13: 0.1250 REMARK 3 S21: 0.0470 S22: 0.1002 S23: -0.3021 REMARK 3 S31: -0.0806 S32: 0.0701 S33: -0.0198 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 276:304) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5590 6.8718 -30.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2386 REMARK 3 T33: 0.2340 T12: -0.0227 REMARK 3 T13: 0.0523 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.2704 L22: 6.2417 REMARK 3 L33: 2.3095 L12: -1.9839 REMARK 3 L13: 1.1177 L23: 0.0749 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.3310 S13: 0.1758 REMARK 3 S21: -0.6830 S22: -0.0381 S23: -0.3916 REMARK 3 S31: -0.2657 S32: 0.3186 S33: -0.0125 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 305:344) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5498 9.3932 -17.5217 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1638 REMARK 3 T33: 0.1666 T12: 0.0196 REMARK 3 T13: -0.0411 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.6172 L22: 2.8235 REMARK 3 L33: 0.8076 L12: 0.5479 REMARK 3 L13: -0.7743 L23: 0.9541 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: 0.0148 S13: -0.0429 REMARK 3 S21: 0.0130 S22: 0.0887 S23: -0.2738 REMARK 3 S31: -0.1095 S32: 0.0492 S33: -0.1219 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3B6V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 3350, 0.20 M REMARK 280 LITHIUM ACETATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.99550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.54700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.89950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.54700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.99550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.89950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 104 REMARK 465 SER A 105 REMARK 465 VAL A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 LEU A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 HIS A 206 REMARK 465 LEU A 207 REMARK 465 ASN A 208 REMARK 465 ARG A 227 REMARK 465 ALA A 228 REMARK 465 PRO A 229 REMARK 465 SER A 230 REMARK 465 ARG A 231 REMARK 465 LEU A 232 REMARK 465 PRO A 233 REMARK 465 ARG A 234 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 PRO A 237 REMARK 465 GLY A 238 REMARK 465 LEU A 257 REMARK 465 LYS A 258 REMARK 465 THR A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 THR A 262 REMARK 465 GLY A 263 REMARK 465 GLU A 264 REMARK 465 ARG A 265 REMARK 465 LEU A 266 REMARK 465 LYS A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 ILE A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 LYS A 25 CD CE NZ REMARK 470 GLN A 32 CD OE1 NE2 REMARK 470 GLN A 36 CD OE1 NE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 LYS A 147 CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 202 OG1 CG2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 GLN A 239 CD OE1 NE2 REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 ASN A 314 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 129 O HOH A 2144 1.92 REMARK 500 O HOH A 2004 O HOH A 2006 2.04 REMARK 500 OD1 ASN A 273 O HOH A 2265 2.10 REMARK 500 O HOH A 2154 O HOH A 2306 2.10 REMARK 500 OE1 GLU A 65 O HOH A 2098 2.15 REMARK 500 O HOH A 2228 O HOH A 2231 2.16 REMARK 500 O HOH A 2207 O HOH A 2208 2.17 REMARK 500 O SER A 212 O HOH A 2242 2.17 REMARK 500 OE1 GLU A 103 O HOH A 2125 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 210 83.56 63.94 REMARK 500 SER A 211 -19.67 -48.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 156 GLY A 157 144.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2328 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1346 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 98 OG1 REMARK 620 2 ADP A1345 O3B 93.3 REMARK 620 3 HOH A2126 O 87.9 172.0 REMARK 620 4 HOH A2127 O 85.9 95.7 92.2 REMARK 620 5 HOH A2128 O 97.0 88.9 83.1 174.4 REMARK 620 6 HOH A2324 O 172.5 90.0 89.9 87.0 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1346 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XT3 RELATED DB: PDB REMARK 900 HUMAN KIF7, A KINESIN INVOLVED IN HEDGEHOG SIGNALLING REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1,2,3, AND 4 - CHANGES OWING TO CLONING STRATEGY. DBREF 4A14 A 5 344 UNP Q2M1P5 KIF7_HUMAN 8 347 SEQADV 4A14 GLY A 1 UNP Q2M1P5 CLONING ARTIFACT SEQADV 4A14 ALA A 2 UNP Q2M1P5 CLONING ARTIFACT SEQADV 4A14 MET A 3 UNP Q2M1P5 CLONING ARTIFACT SEQADV 4A14 GLY A 4 UNP Q2M1P5 CLONING ARTIFACT SEQRES 1 A 344 GLY ALA MET GLY LEU PRO GLY ALA GLU GLU ALA PRO VAL SEQRES 2 A 344 ARG VAL ALA LEU ARG VAL ARG PRO LEU LEU PRO LYS GLU SEQRES 3 A 344 LEU LEU HIS GLY HIS GLN SER CYS LEU GLN VAL GLU PRO SEQRES 4 A 344 GLY LEU GLY ARG VAL THR LEU GLY ARG ASP ARG HIS PHE SEQRES 5 A 344 GLY PHE HIS VAL VAL LEU ALA GLU ASP ALA GLY GLN GLU SEQRES 6 A 344 ALA VAL TYR GLN ALA CYS VAL GLN PRO LEU LEU GLU ALA SEQRES 7 A 344 PHE PHE GLU GLY PHE ASN ALA THR VAL PHE ALA TYR GLY SEQRES 8 A 344 GLN THR GLY SER GLY LYS THR TYR THR MET GLY GLU ALA SEQRES 9 A 344 SER VAL ALA SER LEU LEU GLU ASP GLU GLN GLY ILE VAL SEQRES 10 A 344 PRO ARG ALA MET ALA GLU ALA PHE LYS LEU ILE ASP GLU SEQRES 11 A 344 ASN ASP LEU LEU ASP CYS LEU VAL HIS VAL SER TYR LEU SEQRES 12 A 344 GLU VAL TYR LYS GLU GLU PHE ARG ASP LEU LEU GLU VAL SEQRES 13 A 344 GLY THR ALA SER ARG ASP ILE GLN LEU ARG GLU ASP GLU SEQRES 14 A 344 ARG GLY ASN VAL VAL LEU CYS GLY VAL LYS GLU VAL ASP SEQRES 15 A 344 VAL GLU GLY LEU ASP GLU VAL LEU SER LEU LEU GLU MET SEQRES 16 A 344 GLY ASN ALA ALA ARG HIS THR GLY ALA THR HIS LEU ASN SEQRES 17 A 344 HIS LEU SER SER ARG SER HIS THR VAL PHE THR VAL THR SEQRES 18 A 344 LEU GLU GLN ARG GLY ARG ALA PRO SER ARG LEU PRO ARG SEQRES 19 A 344 PRO ALA PRO GLY GLN LEU LEU VAL SER LYS PHE HIS PHE SEQRES 20 A 344 VAL ASP LEU ALA GLY SER GLU ARG VAL LEU LYS THR GLY SEQRES 21 A 344 SER THR GLY GLU ARG LEU LYS GLU SER ILE GLN ILE ASN SEQRES 22 A 344 SER SER LEU LEU ALA LEU GLY ASN VAL ILE SER ALA LEU SEQRES 23 A 344 GLY ASP PRO GLN ARG ARG GLY SER HIS ILE PRO TYR ARG SEQRES 24 A 344 ASP SER LYS ILE THR ARG ILE LEU LYS ASP SER LEU GLY SEQRES 25 A 344 GLY ASN ALA LYS THR VAL MET ILE ALA CYS VAL SER PRO SEQRES 26 A 344 SER SER SER ASP PHE ASP GLU THR LEU ASN THR LEU ASN SEQRES 27 A 344 TYR ALA SER ARG ALA GLN HET ADP A1345 27 HET MG A1346 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *328(H2 O) HELIX 1 1 LEU A 23 HIS A 29 1 7 HELIX 2 2 PRO A 39 LEU A 41 5 3 HELIX 3 3 GLY A 63 VAL A 72 1 10 HELIX 4 4 VAL A 72 GLU A 81 1 10 HELIX 5 5 GLY A 96 GLY A 102 1 7 HELIX 6 6 GLY A 115 ASN A 131 1 17 HELIX 7 7 ALA A 159 ILE A 163 5 5 HELIX 8 8 GLY A 185 THR A 202 1 18 HELIX 9 9 LEU A 210 SER A 214 5 5 HELIX 10 10 SER A 274 GLY A 287 1 14 HELIX 11 11 PRO A 297 ASP A 300 5 4 HELIX 12 12 SER A 301 LEU A 307 1 7 HELIX 13 13 ASP A 329 ALA A 343 1 15 SHEET 1 AA 8 VAL A 56 LEU A 58 0 SHEET 2 AA 8 ARG A 14 VAL A 19 1 O VAL A 15 N VAL A 56 SHEET 3 AA 8 LYS A 316 VAL A 323 1 O THR A 317 N ARG A 14 SHEET 4 AA 8 ALA A 85 TYR A 90 1 O THR A 86 N VAL A 318 SHEET 5 AA 8 LEU A 240 ASP A 249 1 O LYS A 244 N ALA A 85 SHEET 6 AA 8 HIS A 215 ARG A 225 -1 O THR A 216 N ASP A 249 SHEET 7 AA 8 ASP A 135 TYR A 146 -1 O ASP A 135 N ARG A 225 SHEET 8 AA 8 GLU A 149 ASP A 152 -1 O GLU A 149 N TYR A 146 SHEET 1 AB 8 VAL A 56 LEU A 58 0 SHEET 2 AB 8 ARG A 14 VAL A 19 1 O VAL A 15 N VAL A 56 SHEET 3 AB 8 LYS A 316 VAL A 323 1 O THR A 317 N ARG A 14 SHEET 4 AB 8 ALA A 85 TYR A 90 1 O THR A 86 N VAL A 318 SHEET 5 AB 8 LEU A 240 ASP A 249 1 O LYS A 244 N ALA A 85 SHEET 6 AB 8 HIS A 215 ARG A 225 -1 O THR A 216 N ASP A 249 SHEET 7 AB 8 ASP A 135 TYR A 146 -1 O ASP A 135 N ARG A 225 SHEET 8 AB 8 VAL A 181 ASP A 182 -1 O VAL A 181 N VAL A 140 SHEET 1 AC 2 GLU A 149 ASP A 152 0 SHEET 2 AC 2 ASP A 135 TYR A 146 -1 O GLU A 144 N ARG A 151 SHEET 1 AD 3 LEU A 35 GLU A 38 0 SHEET 2 AD 3 ARG A 43 LEU A 46 -1 O ARG A 43 N GLU A 38 SHEET 3 AD 3 ARG A 50 GLY A 53 -1 O ARG A 50 N LEU A 46 SHEET 1 AE 2 GLN A 164 GLU A 167 0 SHEET 2 AE 2 VAL A 173 CYS A 176 -1 O VAL A 174 N ARG A 166 LINK OG1 THR A 98 MG MG A1346 1555 1555 2.08 LINK O3B ADP A1345 MG MG A1346 1555 1555 2.02 LINK MG MG A1346 O HOH A2126 1555 1555 2.11 LINK MG MG A1346 O HOH A2127 1555 1555 2.09 LINK MG MG A1346 O HOH A2128 1555 1555 2.15 LINK MG MG A1346 O HOH A2324 1555 1555 2.18 SITE 1 AC1 21 ARG A 18 PRO A 21 GLN A 92 THR A 93 SITE 2 AC1 21 GLY A 94 SER A 95 GLY A 96 LYS A 97 SITE 3 AC1 21 THR A 98 TYR A 99 MG A1346 HOH A2018 SITE 4 AC1 21 HOH A2021 HOH A2124 HOH A2127 HOH A2128 SITE 5 AC1 21 HOH A2129 HOH A2323 HOH A2324 HOH A2325 SITE 6 AC1 21 HOH A2326 SITE 1 AC2 6 THR A 98 ADP A1345 HOH A2126 HOH A2127 SITE 2 AC2 6 HOH A2128 HOH A2324 CRYST1 45.991 79.799 95.094 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010516 0.00000