HEADER HYDROLASE 14-SEP-11 4A15 TITLE CRYSTAL STRUCTURE OF AN XPD DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE TA0057; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: XPD HELICASE; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*DTP*AP*CP*GP)-3'; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS HYDROLASE, HELICASE, NUCLEOTIDE EXCISION REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR J.KUPER,S.C.WOLSKI,G.MICHELS,C.KISKER REVDAT 2 20-DEC-23 4A15 1 REMARK LINK REVDAT 1 01-FEB-12 4A15 0 JRNL AUTH J.KUPER,S.C.WOLSKI,G.MICHELS,C.KISKER JRNL TITL FUNCTIONAL AND STRUCTURAL STUDIES OF THE NUCLEOTIDE EXCISION JRNL TITL 2 REPAIR HELICASE XPD SUGGEST A POLARITY FOR DNA JRNL TITL 3 TRANSLOCATION. JRNL REF EMBO J. V. 31 494 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 22081108 JRNL DOI 10.1038/EMBOJ.2011.374 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4822 REMARK 3 NUCLEIC ACID ATOMS : 83 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.859 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5043 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3554 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6847 ; 1.736 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8602 ; 1.346 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 6.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;34.077 ;23.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;18.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;21.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5484 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1071 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 79 REMARK 3 RESIDUE RANGE : A 176 A 224 REMARK 3 RESIDUE RANGE : A 363 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9993 34.6273 16.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0282 REMARK 3 T33: 0.0480 T12: 0.0304 REMARK 3 T13: 0.0389 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.6273 L22: 2.4048 REMARK 3 L33: 1.8226 L12: -0.6861 REMARK 3 L13: -0.7189 L23: 0.4831 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.0353 S13: 0.0358 REMARK 3 S21: 0.2249 S22: 0.0146 S23: 0.0893 REMARK 3 S31: -0.0964 S32: -0.0487 S33: -0.0841 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 175 REMARK 3 RESIDUE RANGE : A 1616 A 1616 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5583 9.5641 13.5137 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0144 REMARK 3 T33: 0.0625 T12: 0.0051 REMARK 3 T13: 0.0195 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.3999 L22: 2.7666 REMARK 3 L33: 2.9475 L12: -0.9637 REMARK 3 L13: 0.0582 L23: -0.4535 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.0090 S13: 0.0127 REMARK 3 S21: 0.1010 S22: 0.0802 S23: 0.0306 REMARK 3 S31: 0.2382 S32: -0.0005 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8728 26.1330 -14.3937 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.1326 REMARK 3 T33: 0.0718 T12: 0.0241 REMARK 3 T13: 0.0220 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.0574 L22: 3.1293 REMARK 3 L33: 1.4987 L12: 0.3256 REMARK 3 L13: -0.3925 L23: -0.3058 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0495 S13: 0.0426 REMARK 3 S21: -0.2655 S22: 0.0654 S23: -0.1241 REMARK 3 S31: -0.0188 S32: 0.1040 S33: -0.0538 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 407 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4519 49.5014 19.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.1127 REMARK 3 T33: 0.2425 T12: 0.0510 REMARK 3 T13: 0.0533 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.9892 L22: 1.4995 REMARK 3 L33: 3.8577 L12: 0.2581 REMARK 3 L13: 0.0865 L23: 0.3888 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.3283 S13: 0.3496 REMARK 3 S21: 0.1691 S22: -0.0348 S23: -0.2645 REMARK 3 S31: 0.3007 S32: 0.5153 S33: 0.0078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4A15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 92 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VSF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES (PH 6.5), 10 MM MGSO4, 5-30% REMARK 280 2-METHYL-2 4-PENTANEDIOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.12667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.56333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.84500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.28167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 146.40833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 SER A 422 REMARK 465 SER A 423 REMARK 465 LYS A 424 REMARK 465 TYR A 425 REMARK 465 ASP A 426 REMARK 465 THR A 427 REMARK 465 LEU A 428 REMARK 465 SER A 507 REMARK 465 GLU A 508 REMARK 465 GLY A 509 REMARK 465 ILE A 510 REMARK 465 ASN A 511 REMARK 465 PHE A 512 REMARK 465 PRO A 513 REMARK 465 GLY A 514 REMARK 465 GLU A 616 REMARK 465 LYS A 617 REMARK 465 TYR A 618 REMARK 465 GLY A 619 REMARK 465 ALA A 620 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 463 O ASN A 466 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2037 O HOH A 2107 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 1 P DT E 1 OP3 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 25 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 81 78.46 -107.69 REMARK 500 ASN A 124 68.21 -105.31 REMARK 500 ASP A 245 61.57 33.28 REMARK 500 GLN A 250 -112.27 42.33 REMARK 500 ASP A 343 109.54 -58.78 REMARK 500 GLU A 354 159.74 -45.86 REMARK 500 LEU A 385 -6.99 -144.12 REMARK 500 GLU A 465 -3.73 -57.03 REMARK 500 VAL A 468 -160.62 176.04 REMARK 500 GLU A 475 81.79 -67.98 REMARK 500 ARG A 477 -108.55 4.23 REMARK 500 ASP A 480 -42.37 147.65 REMARK 500 GLN A 481 -58.76 75.37 REMARK 500 ARG A 493 -64.12 -148.38 REMARK 500 PRO A 530 47.67 -78.62 REMARK 500 LYS A 547 44.59 -141.59 REMARK 500 VAL A 553 -57.21 -125.42 REMARK 500 SER A 571 153.69 179.40 REMARK 500 ILE A 592 53.83 -140.07 REMARK 500 PRO A 593 -8.32 -53.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 465 ASN A 466 140.81 REMARK 500 ASP A 494 HIS A 495 -147.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SO4 A 1619 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 92 SG REMARK 620 2 SF4 A1616 S2 114.7 REMARK 620 3 SF4 A1616 S3 107.3 102.9 REMARK 620 4 SF4 A1616 S4 120.6 104.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 113 SG REMARK 620 2 SF4 A1616 S1 119.1 REMARK 620 3 SF4 A1616 S3 105.7 107.3 REMARK 620 4 SF4 A1616 S4 113.6 105.5 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 SF4 A1616 S1 111.3 REMARK 620 3 SF4 A1616 S2 110.0 102.7 REMARK 620 4 SF4 A1616 S4 120.9 105.8 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1616 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 SF4 A1616 S1 109.6 REMARK 620 3 SF4 A1616 S2 113.1 104.3 REMARK 620 4 SF4 A1616 S3 116.8 107.7 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1620 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 312 OE1 REMARK 620 2 GLU A 315 OE2 87.4 REMARK 620 3 GLU A 315 OE1 94.2 44.1 REMARK 620 4 HOH A2044 O 169.1 103.3 92.0 REMARK 620 5 HOH A2045 O 95.5 47.4 89.9 93.4 REMARK 620 6 HOH A2059 O 85.4 144.1 171.6 87.1 98.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1620 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VSF RELATED DB: PDB REMARK 900 STRUCTURE OF XPD FROM THERMOPLASMA ACIDOPHILUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE NATIVE SEQUENCE IS REFERENCED TO THE NCBI DATABASE. REMARK 999 THE DATABASE ACCESSION NUMBER IS NP_393536 DBREF 4A15 A 20 620 UNP Q9HM14 XPD_THEAC 2 602 DBREF 4A15 E 1 4 PDB 4A15 4A15 1 4 SEQADV 4A15 MET A 1 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 TYR A 2 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 GLU A 3 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ASN A 4 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ARG A 5 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 GLN A 6 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 TYR A 7 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 GLN A 8 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 VAL A 9 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 GLU A 10 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ALA A 11 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ILE A 12 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ASP A 13 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 PHE A 14 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 LEU A 15 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 ARG A 16 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 SER A 17 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 SER A 18 UNP Q9HM14 SEE REMARK 999 SEQADV 4A15 LEU A 19 UNP Q9HM14 SEE REMARK 999 SEQRES 1 A 620 MET TYR GLU ASN ARG GLN TYR GLN VAL GLU ALA ILE ASP SEQRES 2 A 620 PHE LEU ARG SER SER LEU GLN LYS SER TYR GLY VAL ALA SEQRES 3 A 620 LEU GLU SER PRO THR GLY SER GLY LYS THR ILE MET ALA SEQRES 4 A 620 LEU LYS SER ALA LEU GLN TYR SER SER GLU ARG LYS LEU SEQRES 5 A 620 LYS VAL LEU TYR LEU VAL ARG THR ASN SER GLN GLU GLU SEQRES 6 A 620 GLN VAL ILE LYS GLU LEU ARG SER LEU SER SER THR MET SEQRES 7 A 620 LYS ILE ARG ALA ILE PRO MET GLN GLY ARG VAL ASN MET SEQRES 8 A 620 CYS ILE LEU TYR ARG MET VAL ASP ASP LEU HIS GLU ILE SEQRES 9 A 620 ASN ALA GLU SER LEU ALA LYS PHE CYS ASN MET LYS LYS SEQRES 10 A 620 ARG GLU VAL MET ALA GLY ASN GLU ALA ALA CYS PRO TYR SEQRES 11 A 620 PHE ASN PHE LYS ILE ARG SER ASP GLU THR LYS ARG PHE SEQRES 12 A 620 LEU PHE ASP GLU LEU PRO THR ALA GLU GLU PHE TYR ASP SEQRES 13 A 620 TYR GLY GLU ARG ASN ASN VAL CYS PRO TYR GLU SER MET SEQRES 14 A 620 LYS ALA ALA LEU PRO ASP ALA ASP ILE VAL ILE ALA PRO SEQRES 15 A 620 TYR ALA TYR PHE LEU ASN ARG SER VAL ALA GLU LYS PHE SEQRES 16 A 620 LEU SER HIS TRP GLY VAL SER ARG ASN GLN ILE VAL ILE SEQRES 17 A 620 ILE LEU ASP GLU ALA HIS ASN LEU PRO ASP ILE GLY ARG SEQRES 18 A 620 SER ILE GLY SER PHE ARG ILE SER VAL GLU SER LEU ASN SEQRES 19 A 620 ARG ALA ASP ARG GLU ALA GLN ALA TYR GLY ASP PRO GLU SEQRES 20 A 620 LEU SER GLN LYS ILE HIS VAL SER ASP LEU ILE GLU MET SEQRES 21 A 620 ILE ARG SER ALA LEU GLN SER MET VAL SER GLU ARG CYS SEQRES 22 A 620 GLY LYS GLY ASP VAL ARG ILE ARG PHE GLN GLU PHE MET SEQRES 23 A 620 GLU TYR MET ARG ILE MET ASN LYS ARG SER GLU ARG GLU SEQRES 24 A 620 ILE ARG SER LEU LEU ASN TYR LEU TYR LEU PHE GLY GLU SEQRES 25 A 620 TYR VAL GLU ASN GLU LYS GLU LYS VAL GLY LYS VAL PRO SEQRES 26 A 620 PHE SER TYR CYS SER SER VAL ALA SER ARG ILE ILE ALA SEQRES 27 A 620 PHE SER ASP GLN ASP GLU GLU LYS TYR ALA ALA ILE LEU SEQRES 28 A 620 SER PRO GLU ASP GLY GLY TYR MET GLN ALA ALA CYS LEU SEQRES 29 A 620 ASP PRO SER GLY ILE LEU GLU VAL LEU LYS GLU SER LYS SEQRES 30 A 620 THR ILE HIS MET SER GLY THR LEU ASP PRO PHE ASP PHE SEQRES 31 A 620 TYR SER ASP ILE THR GLY PHE GLU ILE PRO PHE LYS LYS SEQRES 32 A 620 ILE GLY GLU ILE PHE PRO PRO GLU ASN ARG TYR ILE ALA SEQRES 33 A 620 TYR TYR ASP GLY VAL SER SER LYS TYR ASP THR LEU ASP SEQRES 34 A 620 GLU LYS GLU LEU ASP ARG MET ALA THR VAL ILE GLU ASP SEQRES 35 A 620 ILE ILE LEU LYS VAL LYS LYS ASN THR ILE VAL TYR PHE SEQRES 36 A 620 PRO SER TYR SER LEU MET ASP ARG VAL GLU ASN ARG VAL SEQRES 37 A 620 SER PHE GLU HIS MET LYS GLU TYR ARG GLY ILE ASP GLN SEQRES 38 A 620 LYS GLU LEU TYR SER MET LEU LYS LYS PHE ARG ARG ASP SEQRES 39 A 620 HIS GLY THR ILE PHE ALA VAL SER GLY GLY ARG LEU SER SEQRES 40 A 620 GLU GLY ILE ASN PHE PRO GLY ASN GLU LEU GLU MET ILE SEQRES 41 A 620 ILE LEU ALA GLY LEU PRO PHE PRO ARG PRO ASP ALA ILE SEQRES 42 A 620 ASN ARG SER LEU PHE ASP TYR TYR GLU ARG LYS TYR GLY SEQRES 43 A 620 LYS GLY TRP GLU TYR SER VAL VAL TYR PRO THR ALA ILE SEQRES 44 A 620 LYS ILE ARG GLN GLU ILE GLY ARG LEU ILE ARG SER ALA SEQRES 45 A 620 GLU ASP THR GLY ALA CYS VAL ILE LEU ASP LYS ARG ALA SEQRES 46 A 620 GLY GLN PHE ARG LYS PHE ILE PRO ASP MET LYS LYS THR SEQRES 47 A 620 SER ASP PRO ALA SER ASP ILE TYR ASN PHE PHE ILE SER SEQRES 48 A 620 ALA GLN ALA ARG GLU LYS TYR GLY ALA SEQRES 1 E 4 DT DA DC DG HET SF4 A1616 8 HET SO4 A1617 5 HET SO4 A1618 5 HET SO4 A1619 4 HET CA A1620 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 3 SF4 FE4 S4 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 CA CA 2+ FORMUL 8 HOH *134(H2 O) HELIX 1 1 ARG A 5 SER A 22 1 18 HELIX 2 2 GLY A 34 LYS A 51 1 18 HELIX 3 3 THR A 60 MET A 78 1 19 HELIX 4 4 GLY A 87 CYS A 92 1 6 HELIX 5 5 LEU A 94 ASP A 99 1 6 HELIX 6 6 ASN A 105 ALA A 122 1 18 HELIX 7 7 ASN A 132 ARG A 136 5 5 HELIX 8 8 SER A 137 LEU A 148 1 12 HELIX 9 9 THR A 150 ASN A 161 1 12 HELIX 10 10 CYS A 164 LEU A 173 1 10 HELIX 11 11 PRO A 174 ALA A 176 5 3 HELIX 12 12 TYR A 183 LEU A 187 1 5 HELIX 13 13 ASN A 188 GLY A 200 1 13 HELIX 14 14 SER A 202 ASN A 204 5 3 HELIX 15 15 GLU A 212 HIS A 214 5 3 HELIX 16 16 ASN A 215 SER A 225 1 11 HELIX 17 17 VAL A 230 TYR A 243 1 14 HELIX 18 18 VAL A 254 CYS A 273 1 20 HELIX 19 19 PHE A 282 LYS A 294 1 13 HELIX 20 20 SER A 296 VAL A 321 1 26 HELIX 21 21 SER A 327 ASP A 341 1 15 HELIX 22 22 PRO A 353 GLY A 356 5 4 HELIX 23 23 PRO A 366 GLU A 371 1 6 HELIX 24 24 VAL A 372 SER A 376 5 5 HELIX 25 25 PRO A 387 GLY A 396 1 10 HELIX 26 26 PRO A 409 GLU A 411 5 3 HELIX 27 27 ASP A 429 LYS A 448 1 20 HELIX 28 28 SER A 457 GLU A 465 1 9 HELIX 29 29 GLN A 481 ARG A 492 1 12 HELIX 30 30 ASP A 531 GLY A 546 1 16 HELIX 31 31 LYS A 547 VAL A 553 1 7 HELIX 32 32 VAL A 553 ARG A 567 1 15 HELIX 33 33 LYS A 583 ILE A 592 5 10 HELIX 34 34 ASP A 600 ALA A 614 1 15 SHEET 1 AA 7 ALA A 82 PRO A 84 0 SHEET 2 AA 7 ILE A 178 PRO A 182 1 O ILE A 178 N ILE A 83 SHEET 3 AA 7 LYS A 53 VAL A 58 1 O VAL A 54 N VAL A 179 SHEET 4 AA 7 ILE A 206 LEU A 210 1 O VAL A 207 N LEU A 55 SHEET 5 AA 7 LYS A 377 SER A 382 1 O LYS A 377 N ILE A 208 SHEET 6 AA 7 GLY A 24 GLU A 28 1 O VAL A 25 N HIS A 380 SHEET 7 AA 7 PHE A 401 LYS A 403 1 O LYS A 402 N GLU A 28 SHEET 1 AB 4 PHE A 226 SER A 229 0 SHEET 2 AB 4 TYR A 358 CYS A 363 -1 O MET A 359 N ILE A 228 SHEET 3 AB 4 TYR A 347 SER A 352 -1 O ALA A 348 N ALA A 362 SHEET 4 AB 4 VAL A 278 ILE A 280 -1 O VAL A 278 N LEU A 351 SHEET 1 AC 2 GLU A 247 SER A 249 0 SHEET 2 AC 2 ILE A 252 HIS A 253 -1 O ILE A 252 N LEU A 248 SHEET 1 AD 7 MET A 473 LYS A 474 0 SHEET 2 AD 7 THR A 497 VAL A 501 1 O THR A 497 N MET A 473 SHEET 3 AD 7 THR A 451 PHE A 455 1 O THR A 451 N ILE A 498 SHEET 4 AD 7 MET A 519 LEU A 522 1 O MET A 519 N ILE A 452 SHEET 5 AD 7 GLY A 576 LEU A 581 1 O ALA A 577 N ILE A 520 SHEET 6 AD 7 ARG A 413 TYR A 418 1 O TYR A 414 N CYS A 578 SHEET 7 AD 7 LYS A 596 THR A 598 1 O LYS A 596 N TYR A 417 LINK SG CYS A 92 FE1 SF4 A1616 1555 1555 2.26 LINK SG CYS A 113 FE2 SF4 A1616 1555 1555 2.46 LINK SG CYS A 128 FE3 SF4 A1616 1555 1555 2.32 LINK SG CYS A 164 FE4 SF4 A1616 1555 1555 2.33 LINK OE1 GLU A 312 CA CA A1620 1555 1555 2.12 LINK OE2 GLU A 315 CA CA A1620 1555 1555 3.19 LINK OE1 GLU A 315 CA CA A1620 1555 1555 2.28 LINK CA CA A1620 O HOH A2044 1555 1555 2.05 LINK CA CA A1620 O HOH A2045 1555 1555 2.10 LINK CA CA A1620 O HOH A2059 1555 6554 2.15 CISPEP 1 ASP A 386 PRO A 387 0 1.96 CISPEP 2 ASN A 466 ARG A 467 0 7.62 CISPEP 3 VAL A 468 SER A 469 0 4.81 CISPEP 4 ILE A 479 ASP A 480 0 -3.18 SITE 1 AC1 7 ARG A 88 CYS A 92 ILE A 93 LEU A 94 SITE 2 AC1 7 CYS A 113 CYS A 128 CYS A 164 SITE 1 AC2 7 THR A 31 GLY A 32 SER A 33 GLY A 34 SITE 2 AC2 7 LYS A 35 GLN A 66 HOH A2009 SITE 1 AC3 6 ARG A 88 TYR A 166 LYS A 170 LYS A 194 SITE 2 AC3 6 HIS A 198 HOH A2034 SITE 1 AC4 2 GLU A 259 ASP A 389 SITE 1 AC5 6 ASN A 162 GLU A 312 GLU A 315 HOH A2044 SITE 2 AC5 6 HOH A2045 HOH A2059 CRYST1 79.060 79.060 175.690 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012649 0.007303 0.000000 0.00000 SCALE2 0.000000 0.014605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005692 0.00000