HEADER HYDROLASE 16-SEP-11 4A1N TITLE HUMAN MITOCHONDRIAL ENDO-EXONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE EXOG, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-368; COMPND 5 SYNONYM: ENDONUCLEASE G-LIKE 1, ENDO G-LIKE 1, ENDO-EXO NUCLEASE; COMPND 6 EC: 3.1.30.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CLONING ARTIFACT GLU330VAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 T.KARLBERG,T.KOTENYOVA,T.NYMAN,C.PERSSON,H.SCHULER,A.G.THORSELL, AUTHOR 4 L.TRESAUGUES,J.WEIGELT,P.NORDLUND REVDAT 2 20-DEC-23 4A1N 1 REMARK LINK REVDAT 1 29-FEB-12 4A1N 0 JRNL AUTH M.WELIN,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA, JRNL AUTH 2 R.COLLINS,A.M.EDWARDS,S.FLODIN,S.GRASLUND,M.HAMMARSTROM, JRNL AUTH 3 I.JOHANSSON,T.KARLBERG,T.KOTENYOVA,T.NYMAN,C.PERSSON, JRNL AUTH 4 H.SCHULER,A.G.THORSELL,L.TRESAUGUES,J.WEIGELT,P.NORDLUND JRNL TITL HUMAN MITOCHONDRIAL ENDO-EXONUCLEASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 653 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2661 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1954 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2528 REMARK 3 BIN R VALUE (WORKING SET) : 0.1927 REMARK 3 BIN FREE R VALUE : 0.2439 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28680 REMARK 3 B22 (A**2) : 0.28680 REMARK 3 B33 (A**2) : -0.57370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.283 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.411 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.266 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.401 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.268 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2364 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3207 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1083 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 343 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2364 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 303 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2745 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=MG CL NA. NUMBER REMARK 3 OF ATOMS WITH PROPER CCP4 ATOM TYPE=2375. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=2. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=2. REMARK 4 REMARK 4 4A1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ISM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.96333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.92667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.92667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.96333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.96333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 41 REMARK 465 GLN A 42 REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 GLY A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 LYS A 51 REMARK 465 GLN A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 GLY A 55 REMARK 465 SER A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 319 REMARK 465 ARG A 320 REMARK 465 ALA A 335 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 LEU A 354 REMARK 465 LYS A 355 REMARK 465 ALA A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 GLN A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 THR A 362 REMARK 465 GLN A 363 REMARK 465 ILE A 364 REMARK 465 ARG A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 SER A 368 REMARK 465 ALA A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 VAL A 330 CG1 CG2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 160 -8.49 -57.97 REMARK 500 PHE A 281 66.80 38.81 REMARK 500 GLU A 317 -47.43 174.54 REMARK 500 VAL A 322 -175.49 62.14 REMARK 500 LEU A 323 52.54 -109.69 REMARK 500 ILE A 337 -101.68 -75.68 REMARK 500 GLU A 338 -1.00 72.68 REMARK 500 PRO A 339 -127.10 -86.17 REMARK 500 ASP A 340 131.25 70.91 REMARK 500 TYR A 347 37.37 -90.06 REMARK 500 GLU A 348 -43.96 -154.01 REMARK 500 LYS A 350 -64.49 -100.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1352 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 HOH A2024 O 94.3 REMARK 620 3 HOH A2031 O 77.1 95.3 REMARK 620 4 HOH A2032 O 73.4 166.6 87.1 REMARK 620 5 HOH A2034 O 146.6 118.3 91.7 74.7 REMARK 620 6 HOH A2040 O 85.0 94.3 160.3 79.8 98.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1355 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A GLU330VAL MUTATION IN THE PROTEIN SEQUENCE. THE REMARK 999 SIDE CHAIN WAS NOT VISIBLE IN THE ELECTRON DENSITY. WE REMARK 999 BELIEVE THIS IS A CLONING ARTIFACT. DBREF 4A1N A 42 368 UNP Q9Y2C4 EXOG_HUMAN 42 368 SEQADV 4A1N MET A 41 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N VAL A 330 UNP Q9Y2C4 GLU 330 CLONING ARTIFACT SEQADV 4A1N ALA A 369 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 370 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 371 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 372 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 373 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 374 UNP Q9Y2C4 EXPRESSION TAG SEQADV 4A1N HIS A 375 UNP Q9Y2C4 EXPRESSION TAG SEQRES 1 A 335 MET GLN GLY ALA GLU GLY ALA LEU THR GLY LYS GLN PRO SEQRES 2 A 335 ASP GLY SER ALA GLU LYS ALA VAL LEU GLU GLN PHE GLY SEQRES 3 A 335 PHE PRO LEU THR GLY THR GLU ALA ARG CYS TYR THR ASN SEQRES 4 A 335 HIS ALA LEU SER TYR ASP GLN ALA LYS ARG VAL PRO ARG SEQRES 5 A 335 TRP VAL LEU GLU HIS ILE SER LYS SER LYS ILE MET GLY SEQRES 6 A 335 ASP ALA ASP ARG LYS HIS CYS LYS PHE LYS PRO ASP PRO SEQRES 7 A 335 ASN ILE PRO PRO THR PHE SER ALA PHE ASN GLU ASP TYR SEQRES 8 A 335 VAL GLY SER GLY TRP SER ARG GLY HIS MET ALA PRO ALA SEQRES 9 A 335 GLY ASN ASN LYS PHE SER SER LYS ALA MET ALA GLU THR SEQRES 10 A 335 PHE TYR LEU SER ASN ILE VAL PRO GLN ASP PHE ASP ASN SEQRES 11 A 335 ASN SER GLY TYR TRP ASN ARG ILE GLU MET TYR CYS ARG SEQRES 12 A 335 GLU LEU THR GLU ARG PHE GLU ASP VAL TRP VAL VAL SER SEQRES 13 A 335 GLY PRO LEU THR LEU PRO GLN THR ARG GLY ASP GLY LYS SEQRES 14 A 335 LYS ILE VAL SER TYR GLN VAL ILE GLY GLU ASP ASN VAL SEQRES 15 A 335 ALA VAL PRO SER HIS LEU TYR LYS VAL ILE LEU ALA ARG SEQRES 16 A 335 ARG SER SER VAL SER THR GLU PRO LEU ALA LEU GLY ALA SEQRES 17 A 335 PHE VAL VAL PRO ASN GLU ALA ILE GLY PHE GLN PRO GLN SEQRES 18 A 335 LEU THR GLU PHE GLN VAL SER LEU GLN ASP LEU GLU LYS SEQRES 19 A 335 LEU SER GLY LEU VAL PHE PHE PRO HIS LEU ASP ARG THR SEQRES 20 A 335 SER ASP ILE ARG ASN ILE CYS SER VAL ASP THR CYS LYS SEQRES 21 A 335 LEU LEU ASP PHE GLN GLU PHE THR LEU TYR LEU SER THR SEQRES 22 A 335 ARG LYS ILE GLU GLY ALA ARG SER VAL LEU ARG LEU GLU SEQRES 23 A 335 LYS ILE MET VAL ASN LEU LYS ASN ALA GLU ILE GLU PRO SEQRES 24 A 335 ASP ASP TYR PHE MET SER ARG TYR GLU LYS LYS LEU GLU SEQRES 25 A 335 GLU LEU LYS ALA LYS GLU GLN SER GLY THR GLN ILE ARG SEQRES 26 A 335 LYS PRO SER ALA HIS HIS HIS HIS HIS HIS HET MG A1352 1 HET CL A1353 1 HET CL A1354 1 HET NA A1355 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 MG MG 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 NA NA 1+ FORMUL 6 HOH *67(H2 O) HELIX 1 1 ASP A 108 CYS A 112 5 5 HELIX 2 2 PHE A 127 VAL A 132 1 6 HELIX 3 3 PRO A 143 ASN A 147 5 5 HELIX 4 4 SER A 150 THR A 157 1 8 HELIX 5 5 ASP A 167 GLY A 173 1 7 HELIX 6 6 GLY A 173 LEU A 185 1 13 HELIX 7 7 THR A 186 ARG A 188 5 3 HELIX 8 8 GLN A 261 GLU A 264 5 4 HELIX 9 9 SER A 268 GLY A 277 1 10 HELIX 10 10 CYS A 294 VAL A 296 5 3 HELIX 11 11 ASP A 303 ILE A 316 1 14 HELIX 12 12 ARG A 324 ASN A 334 1 11 HELIX 13 13 ASP A 340 SER A 345 1 6 SHEET 1 AA 7 ALA A 74 CYS A 76 0 SHEET 2 AA 7 HIS A 80 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AA 7 VAL A 90 ILE A 98 -1 O VAL A 90 N ASP A 85 SHEET 4 AA 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AA 7 HIS A 227 ARG A 235 -1 O HIS A 227 N LEU A 199 SHEET 6 AA 7 LEU A 244 PRO A 252 -1 O ALA A 245 N ALA A 234 SHEET 7 AA 7 GLN A 266 VAL A 267 1 O VAL A 267 N ALA A 248 SHEET 1 AB 7 ALA A 74 CYS A 76 0 SHEET 2 AB 7 HIS A 80 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AB 7 VAL A 90 ILE A 98 -1 O VAL A 90 N ASP A 85 SHEET 4 AB 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AB 7 HIS A 227 ARG A 235 -1 O HIS A 227 N LEU A 199 SHEET 6 AB 7 LEU A 244 PRO A 252 -1 O ALA A 245 N ALA A 234 SHEET 7 AB 7 ILE A 290 ASN A 292 1 O ARG A 291 N LEU A 246 SHEET 1 AC 2 GLN A 266 VAL A 267 0 SHEET 2 AC 2 LEU A 244 PRO A 252 1 O ALA A 248 N VAL A 267 SHEET 1 AD 2 SER A 137 HIS A 140 0 SHEET 2 AD 2 ILE A 163 GLN A 166 -1 O VAL A 164 N GLY A 139 SHEET 1 AE 2 GLN A 203 THR A 204 0 SHEET 2 AE 2 LYS A 210 ILE A 211 -1 O ILE A 211 N GLN A 203 SHEET 1 AF 2 VAL A 216 ILE A 217 0 SHEET 2 AF 2 VAL A 222 ALA A 223 -1 O VAL A 222 N ILE A 217 LINK OD1 ASN A 171 MG MG A1352 1555 1555 2.19 LINK MG MG A1352 O HOH A2024 1555 1555 2.33 LINK MG MG A1352 O HOH A2031 1555 1555 2.24 LINK MG MG A1352 O HOH A2032 1555 1555 2.24 LINK MG MG A1352 O HOH A2034 1555 1555 2.00 LINK MG MG A1352 O HOH A2040 1555 1555 1.93 SITE 1 AC1 6 ASN A 171 HOH A2024 HOH A2031 HOH A2032 SITE 2 AC1 6 HOH A2034 HOH A2040 SITE 1 AC2 4 ASP A 169 TYR A 174 ILE A 256 GLY A 257 SITE 1 AC3 1 ARG A 138 SITE 1 AC4 2 GLU A 129 ASP A 130 CRYST1 103.180 103.180 83.890 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009692 0.005596 0.000000 0.00000 SCALE2 0.000000 0.011191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011920 0.00000