HEADER HYDROLASE 03-OCT-11 4A3P TITLE STRUCTURE OF USP15 DUSP-UBL DELETION MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DUSP-UBL, RESIDUES 6-123,127-223; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 15, UBIQUITIN THIOLESTERASE 15, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 15, UNPH-2, UNPH4, USP15; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.ELLIOTT,H.LIU,M.W.PASTOK,G.J.GROSSMANN,D.J.RIGDEN,M.J.CLAGUE, AUTHOR 2 S.URBE,I.L.BARSUKOV REVDAT 2 20-DEC-23 4A3P 1 REMARK REVDAT 1 16-NOV-11 4A3P 0 JRNL AUTH P.R.ELLIOTT,H.LIU,M.W.PASTOK,G.J.GROSSMANN,D.J.RIGDEN, JRNL AUTH 2 M.J.CLAGUE,S.URBE,I.L.BARSUKOV JRNL TITL STRUCTURAL VARIABILITY OF THE UBIQUITIN SPECIFIC PROTEASE JRNL TITL 2 DUSP-UBL DOUBLE DOMAINS. JRNL REF FEBS LETT. V. 585 3385 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 22001210 JRNL DOI 10.1016/J.FEBSLET.2011.09.040 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 37168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2714 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1788 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2427 ; 1.891 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2987 ; 1.212 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 5.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;39.109 ;25.349 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;13.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.948 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1958 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 354 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 625 ; 0.321 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1151 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 851 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 897 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.264 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.441 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.505 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.324 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1788 ;13.509 ; 1.922 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1218 ;13.868 ; 1.973 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2420 ;15.308 ; 2.841 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3006 ;16.083 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 64 ;28.951 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3128 ;13.999 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : DUAL SLITS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 34.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 13.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3PV1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M (NH4)2SO4, 100 MM HEPES PH 7.0, REMARK 280 200 MM KI. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 75 REMARK 465 ALA A 76 REMARK 465 GLN A 77 REMARK 465 GLY A 218 REMARK 465 GLY A 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CD OE1 OE2 REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 42 O HOH A 2065 1.56 REMARK 500 OD2 ASP A 200 O HOH A 2209 2.10 REMARK 500 O HOH A 2068 O HOH A 2125 2.10 REMARK 500 O HOH A 2007 O HOH A 2023 2.10 REMARK 500 O HOH A 2013 O HOH A 2014 2.13 REMARK 500 OE2 GLU A 162 OG1 THR A 177 2.16 REMARK 500 CE LYS A 42 O HOH A 2065 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 119 OE2 GLU A 174 2645 1.64 REMARK 500 O HOH A 2039 O HOH A 2194 2655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 123 CD1 PHE A 123 CE1 -0.124 REMARK 500 PHE A 123 CE1 PHE A 123 CZ -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -50.90 80.24 REMARK 500 THR A 105 158.08 71.31 REMARK 500 PHE A 123 -159.35 -106.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W6V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE DUSP DOMAIN OF HUSP15 REMARK 900 RELATED ID: 4A3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE USP15 DUSP-UBL MONOMER REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 124-126 (VKH) WERE SUB-CLONED OUT OF THE SEQUENCE REMARK 999 TO GENERATE A DELETION MUTANT. F123 IS PEPTIDE LINKED TO C127. DBREF 4A3P A 6 223 UNP Q9Y4E8 UBP15_HUMAN 6 223 SEQADV 4A3P A UNP Q9Y4E8 VAL 124 DELETION SEQADV 4A3P A UNP Q9Y4E8 LYS 125 DELETION SEQADV 4A3P A UNP Q9Y4E8 HIS 126 DELETION SEQADV 4A3P GLY A 4 UNP Q9Y4E8 EXPRESSION TAG SEQADV 4A3P ALA A 5 UNP Q9Y4E8 EXPRESSION TAG SEQRES 1 A 217 GLY ALA ALA ALA ASP LEU ASP THR GLN ARG SER ASP ILE SEQRES 2 A 217 ALA THR LEU LEU LYS THR SER LEU ARG LYS GLY ASP THR SEQRES 3 A 217 TRP TYR LEU VAL ASP SER ARG TRP PHE LYS GLN TRP LYS SEQRES 4 A 217 LYS TYR VAL GLY PHE ASP SER TRP ASP LYS TYR GLN MET SEQRES 5 A 217 GLY ASP GLN ASN VAL TYR PRO GLY PRO ILE ASP ASN SER SEQRES 6 A 217 GLY LEU LEU LYS ASP GLY ASP ALA GLN SER LEU LYS GLU SEQRES 7 A 217 HIS LEU ILE ASP GLU LEU ASP TYR ILE LEU LEU PRO THR SEQRES 8 A 217 GLU GLY TRP ASN LYS LEU VAL SER TRP TYR THR LEU MET SEQRES 9 A 217 GLU GLY GLN GLU PRO ILE ALA ARG LYS VAL VAL GLU GLN SEQRES 10 A 217 GLY MET PHE CYS LYS VAL GLU VAL TYR LEU THR GLU LEU SEQRES 11 A 217 LYS LEU CYS GLU ASN GLY ASN MET ASN ASN VAL VAL THR SEQRES 12 A 217 ARG ARG PHE SER LYS ALA ASP THR ILE ASP THR ILE GLU SEQRES 13 A 217 LYS GLU ILE ARG LYS ILE PHE SER ILE PRO ASP GLU LYS SEQRES 14 A 217 GLU THR ARG LEU TRP ASN LYS TYR MET SER ASN THR PHE SEQRES 15 A 217 GLU PRO LEU ASN LYS PRO ASP SER THR ILE GLN ASP ALA SEQRES 16 A 217 GLY LEU TYR GLN GLY GLN VAL LEU VAL ILE GLU GLN LYS SEQRES 17 A 217 ASN GLU ASP GLY THR TRP PRO ARG GLY HET ACT A1223 4 HET IOD A1224 1 HETNAM ACT ACETATE ION HETNAM IOD IODIDE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 IOD I 1- FORMUL 4 HOH *223(H2 O) HELIX 1 1 ASP A 8 LEU A 20 1 13 HELIX 2 2 SER A 35 GLY A 46 1 12 HELIX 3 3 ASP A 57 TYR A 61 5 5 HELIX 4 4 ASN A 67 LEU A 70 5 4 HELIX 5 5 THR A 94 THR A 105 1 12 HELIX 6 6 THR A 157 PHE A 169 1 13 HELIX 7 7 THR A 197 GLY A 202 1 6 SHEET 1 AA 4 TYR A 89 PRO A 93 0 SHEET 2 AA 4 THR A 29 ASP A 34 -1 O TYR A 31 N LEU A 92 SHEET 3 AA 4 ALA A 114 GLN A 120 -1 O ARG A 115 N TRP A 30 SHEET 4 AA 4 PHE A 123 VAL A 129 -1 O PHE A 123 N GLN A 120 SHEET 1 AB 5 ASN A 143 PHE A 152 0 SHEET 2 AB 5 THR A 134 GLU A 140 -1 O THR A 134 N PHE A 152 SHEET 3 AB 5 VAL A 208 GLN A 213 1 O LEU A 209 N CYS A 139 SHEET 4 AB 5 THR A 177 MET A 184 -1 O ARG A 178 N GLU A 212 SHEET 5 AB 5 THR A 187 PRO A 190 -1 O THR A 187 N TYR A 183 SITE 1 AC1 4 ASP A 15 LEU A 19 GLU A 95 LYS A 99 CRYST1 44.950 44.250 56.150 90.00 104.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022247 0.000000 0.005683 0.00000 SCALE2 0.000000 0.022599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018381 0.00000