HEADER HYDROLASE 06-OCT-11 4A3Z TITLE CPGH89CBM32-4 (SELENO-METHIONINE LABELED) PRODUCED BY TITLE 2 CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBM32-4, RESIDUES 1206-1343; COMPND 5 SYNONYM: GH89_CBM32; COMPND 6 EC: 3.2.1.50; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS HYDROLASE, FAMILY 32 CARBOHYDRATE-BINDING MODULE EXPDTA X-RAY DIFFRACTION AUTHOR E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER,R.J.WOODS, AUTHOR 2 A.B.BORASTON REVDAT 2 18-APR-12 4A3Z 1 JRNL REVDAT 1 04-APR-12 4A3Z 0 JRNL AUTH E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER, JRNL AUTH 2 R.J.WOODS,A.B.BORASTON JRNL TITL CARBOHYDRATE RECOGNITION BY AN ARCHITECTURALLY COMPLEX JRNL TITL 2 ALPHA-N-ACETYLGLUCOSAMINIDASE FROM CLOSTRIDIUM PERFRINGENS. JRNL REF PLOS ONE V. 7 33524 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 22479408 JRNL DOI 10.1371/JOURNAL.PONE.0033524 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.83 REMARK 3 NUMBER OF REFLECTIONS : 22556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.13006 REMARK 3 R VALUE (WORKING SET) : 0.12781 REMARK 3 FREE R VALUE : 0.17333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1220 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.550 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.590 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.113 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.582 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09 REMARK 3 B22 (A**2) : 0.09 REMARK 3 B33 (A**2) : -0.18 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1086 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 716 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1473 ; 1.649 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1769 ; 0.948 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 7.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;34.424 ;26.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;13.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;13.301 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1244 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 200 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 688 ; 1.876 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 282 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1110 ; 2.840 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 398 ; 4.520 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 360 ; 6.595 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1802 ; 1.759 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4A3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-OCT-11. REMARK 100 THE PDBE ID CODE IS EBI-49915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.3 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 16.6 REMARK 200 R MERGE FOR SHELL (I) : 0.40 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.27500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.63750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.91250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.63750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2179 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2180 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2236 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1183 REMARK 465 GLY A 1184 REMARK 465 SER A 1185 REMARK 465 SER A 1186 REMARK 465 HIS A 1187 REMARK 465 HIS A 1188 REMARK 465 HIS A 1189 REMARK 465 HIS A 1190 REMARK 465 HIS A 1191 REMARK 465 HIS A 1192 REMARK 465 SER A 1193 REMARK 465 SER A 1194 REMARK 465 GLY A 1195 REMARK 465 LEU A 1196 REMARK 465 VAL A 1197 REMARK 465 PRO A 1198 REMARK 465 ARG A 1199 REMARK 465 GLY A 1200 REMARK 465 SER A 1201 REMARK 465 HIS A 1202 REMARK 465 MSE A 1203 REMARK 465 ALA A 1204 REMARK 465 SER A 1205 REMARK 465 ALA A 1206 REMARK 465 ASN A 1207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1256 O HOH A 2140 2.08 REMARK 500 O GLY A 1286 O HOH A 2187 2.17 REMARK 500 NZ LYS A 1310 O HOH A 2147 1.80 REMARK 500 O HOH A 2008 O HOH A 2121 2.14 REMARK 500 O HOH A 2129 O HOH A 2130 2.09 REMARK 500 O HOH A 2139 O HOH A 2235 2.09 REMARK 500 O HOH A 2227 O HOH A 2230 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2097 O HOH A 2195 3544 2.14 REMARK 500 O HOH A 2137 O HOH A 2186 8665 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A1250 CG ASN A1250 OD1 0.137 REMARK 500 GLU A1289 CB GLU A1289 CG -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1256 73.46 64.74 REMARK 500 VAL A1309 -62.70 -122.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2344 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1238 OG REMARK 620 2 SER A1238 O 68.2 REMARK 620 3 ASN A1230 O 96.0 94.3 REMARK 620 4 ASP A1233 OD1 69.0 135.3 77.8 REMARK 620 5 ASP A1235 O 82.0 95.3 168.7 91.2 REMARK 620 6 ALA A1337 O 138.6 70.4 86.7 150.3 102.2 REMARK 620 7 GLU A1338 OE1 141.2 149.1 91.5 75.6 83.4 79.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A2344 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A41 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALACTOSE REMARK 900 RELATED ID: 2VCC RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 RELATED ID: 2VC9 RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN REMARK 900 RELATED ID: 2VCB RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH PUGNAC REMARK 900 RELATED ID: 4A45 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALNAC-BETA-1,3-GALACTOSE REMARK 900 RELATED ID: 4A43 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALNAC REMARK 900 RELATED ID: 4A44 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH THE TN ANTIGEN REMARK 900 RELATED ID: 2VCA RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH BETA-N-ACETYL-D-GLUCOSAMINE REMARK 900 RELATED ID: 4A42 RELATED DB: PDB REMARK 900 CPGH89CBM32-6 PRODUCED BY CLOSTRIDIUM PERFRINGENS REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALNAC-BETA-1,3-GALACTOSE REMARK 900 RELATED ID: 4A40 RELATED DB: PDB REMARK 900 CPGH89CBM32-4, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GLCNAC-ALPHA-1,4-GALACTOSE DBREF 4A3Z A 1206 1343 UNP Q0TST1 Q0TST1_CLOP1 1206 1343 SEQADV 4A3Z MSE A 1183 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z GLY A 1184 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1185 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1186 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1187 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1188 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1189 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1190 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1191 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1192 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1193 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1194 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z GLY A 1195 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z LEU A 1196 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z VAL A 1197 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z PRO A 1198 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z ARG A 1199 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z GLY A 1200 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1201 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z HIS A 1202 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z MSE A 1203 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z ALA A 1204 UNP Q0TST1 EXPRESSION TAG SEQADV 4A3Z SER A 1205 UNP Q0TST1 EXPRESSION TAG SEQRES 1 A 161 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 161 LEU VAL PRO ARG GLY SER HIS MSE ALA SER ALA ASN TYR SEQRES 3 A 161 VAL ASN ILE ALA GLU ASN LYS ASN VAL SER GLY SER ASN SEQRES 4 A 161 SER GLN SER GLY ASN PRO LEU SER ASN ILE THR ASP GLY SEQRES 5 A 161 ASP LEU SER SER LEU TRP ILE SER ASP ASN GLY ALA MSE SEQRES 6 A 161 PRO ALA ASN ALA THR ILE ASP LEU GLU GLY ASN ASN PHE SEQRES 7 A 161 VAL ASP PHE LEU GLU LEU HIS PHE GLU LYS GLU GLY PHE SEQRES 8 A 161 ARG PHE GLN PHE LYS VAL GLU VAL GLU ASP GLU SER GLY SEQRES 9 A 161 ASN ARG GLU THR VAL LEU ASP MSE THR SER ASN THR GLU SEQRES 10 A 161 ASP ASN LYS LYS SER TYR ASN ILE PRO VAL LYS LYS GLU SEQRES 11 A 161 ILE SER LYS ILE HIS ALA THR ILE THR GLY LYS ALA PRO SEQRES 12 A 161 GLY GLY SER PHE ASP GLN ALA TRP ALA ALA ILE ALA GLU SEQRES 13 A 161 ILE LYS ALA MSE SER MODRES 4A3Z MSE A 1247 MET SELENOMETHIONINE MODRES 4A3Z MSE A 1294 MET SELENOMETHIONINE MODRES 4A3Z MSE A 1342 MET SELENOMETHIONINE HET MSE A1247 16 HET MSE A1294 13 HET MSE A1342 8 HET CA A2344 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 2 MSE 3(C5 H11 N O2 SE) FORMUL 3 CA CA 2+ FORMUL 4 HOH *261(H2 O) HELIX 1 1 PRO A 1227 THR A 1232 5 6 HELIX 2 2 ASP A 1243 ALA A 1246 5 4 SHEET 1 AA 6 VAL A1209 ASN A1210 0 SHEET 2 AA 6 GLU A1338 SER A1343 -1 O SER A1343 N VAL A1209 SHEET 3 AA 6 ALA A1249 HIS A1267 -1 N ASP A1262 O MSE A1342 SHEET 4 AA 6 SER A1304 LYS A1323 -1 O TYR A1305 N LEU A1266 SHEET 5 AA 6 PHE A1275 GLU A1282 -1 O GLN A1276 N THR A1321 SHEET 6 AA 6 ARG A1288 ASP A1293 -1 O GLU A1289 N VAL A1281 SHEET 1 AB 4 VAL A1209 ASN A1210 0 SHEET 2 AB 4 GLU A1338 SER A1343 -1 O SER A1343 N VAL A1209 SHEET 3 AB 4 ALA A1249 HIS A1267 -1 N ASP A1262 O MSE A1342 SHEET 4 AB 4 VAL A1217 GLY A1219 -1 O SER A1218 N THR A1252 SHEET 1 AC 2 TRP A1240 ILE A1241 0 SHEET 2 AC 2 ALA A1335 ILE A1336 -1 O ILE A1336 N TRP A1240 LINK C ALA A1246 N AMSE A1247 1555 1555 1.34 LINK C ALA A1246 N BMSE A1247 1555 1555 1.33 LINK C AMSE A1247 N PRO A1248 1555 1555 1.33 LINK C BMSE A1247 N PRO A1248 1555 1555 1.33 LINK C ASP A1293 N MSE A1294 1555 1555 1.33 LINK C MSE A1294 N THR A1295 1555 1555 1.34 LINK C ALA A1341 N MSE A1342 1555 1555 1.33 LINK C MSE A1342 N SER A1343 1555 1555 1.33 LINK CA CA A2344 OE1 GLU A1338 1555 1555 2.37 LINK CA CA A2344 O ALA A1337 1555 1555 2.32 LINK CA CA A2344 O ASP A1235 1555 1555 2.31 LINK CA CA A2344 OD1 ASP A1233 1555 1555 2.51 LINK CA CA A2344 O ASN A1230 1555 1555 2.26 LINK CA CA A2344 O SER A1238 1555 1555 2.56 LINK CA CA A2344 OG SER A1238 1555 1555 2.49 CISPEP 1 MSE A 1247 PRO A 1248 0 -0.72 SITE 1 AC1 6 ASN A1230 ASP A1233 ASP A1235 SER A1238 SITE 2 AC1 6 ALA A1337 GLU A1338 CRYST1 53.190 53.190 110.550 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009046 0.00000