HEADER HYDROLASE 06-OCT-11 4A42 TITLE CPGH89CBM32-6 PRODUCED BY CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBM32-4, RESIDUES 1496-1621; COMPND 5 SYNONYM: GH89_CBM32-4; COMPND 6 EC: 3.2.1.50; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, FAMILY 89 GLYCOSIDE HYDROLASE, FAMILY 32 CARBOHYDRATE- KEYWDS 2 BINDING MODULE, CPF_0859 EXPDTA X-RAY DIFFRACTION AUTHOR E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER,R.J.WOODS, AUTHOR 2 A.B.BORASTON REVDAT 2 18-APR-12 4A42 1 JRNL REVDAT 1 04-APR-12 4A42 0 JRNL AUTH E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER, JRNL AUTH 2 R.J.WOODS,A.B.BORASTON JRNL TITL CARBOHYDRATE RECOGNITION BY AN ARCHITECTURALLY COMPLEX JRNL TITL 2 ALPHA-N-ACETYLGLUCOSAMINIDASE FROM CLOSTRIDIUM PERFRINGENS. JRNL REF PLOS ONE V. 7 33524 2012 JRNL REFN ISSN 1932-6203 JRNL PMID 22479408 JRNL DOI 10.1371/JOURNAL.PONE.0033524 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.550 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.234 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.00 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.23 REMARK 3 NUMBER OF REFLECTIONS : 33037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1988 REMARK 3 R VALUE (WORKING SET) : 0.1966 REMARK 3 FREE R VALUE : 0.2387 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2387 - 3.5465 0.99 2654 153 0.1960 0.2022 REMARK 3 2 3.5465 - 2.8158 1.00 2641 134 0.2033 0.2617 REMARK 3 3 2.8158 - 2.4601 1.00 2644 128 0.2140 0.2693 REMARK 3 4 2.4601 - 2.2353 1.00 2621 140 0.1967 0.2538 REMARK 3 5 2.2353 - 2.0751 1.00 2666 128 0.1947 0.2698 REMARK 3 6 2.0751 - 1.9528 1.00 2592 131 0.1770 0.2119 REMARK 3 7 1.9528 - 1.8550 1.00 2645 147 0.1855 0.2328 REMARK 3 8 1.8550 - 1.7743 0.99 2595 162 0.1860 0.2536 REMARK 3 9 1.7743 - 1.7060 0.99 2592 137 0.1815 0.2011 REMARK 3 10 1.7060 - 1.6471 0.99 2589 139 0.1881 0.2743 REMARK 3 11 1.6471 - 1.5956 0.98 2578 128 0.1973 0.2387 REMARK 3 12 1.5956 - 1.5500 0.97 2552 141 0.2084 0.2895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.361 REMARK 3 B_SOL : 47.200 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.21 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.7346 REMARK 3 B22 (A**2) : 0.7346 REMARK 3 B33 (A**2) : -1.4692 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2037 REMARK 3 ANGLE : 1.294 2783 REMARK 3 CHIRALITY : 0.089 317 REMARK 3 PLANARITY : 0.006 375 REMARK 3 DIHEDRAL : 13.614 762 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY AND RESIDUES WITH POOR SIDE CHAIN DENSITY REMARK 3 ARE PRESENTED AS STUBS. REMARK 4 REMARK 4 4A42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-11. REMARK 100 THE PDBE ID CODE IS EBI-49930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-325) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 15.2 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.6 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.63500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.54500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1473 REMARK 465 GLY A 1474 REMARK 465 SER A 1475 REMARK 465 SER A 1476 REMARK 465 HIS A 1477 REMARK 465 HIS A 1478 REMARK 465 HIS A 1479 REMARK 465 HIS A 1480 REMARK 465 HIS A 1481 REMARK 465 HIS A 1482 REMARK 465 SER A 1483 REMARK 465 SER A 1484 REMARK 465 GLY A 1485 REMARK 465 LEU A 1486 REMARK 465 VAL A 1487 REMARK 465 PRO A 1488 REMARK 465 ARG A 1489 REMARK 465 GLY A 1490 REMARK 465 SER A 1491 REMARK 465 HIS A 1492 REMARK 465 MSE A 1493 REMARK 465 ALA A 1494 REMARK 465 MSE B 1473 REMARK 465 GLY B 1474 REMARK 465 SER B 1475 REMARK 465 SER B 1476 REMARK 465 HIS B 1477 REMARK 465 HIS B 1478 REMARK 465 HIS B 1479 REMARK 465 HIS B 1480 REMARK 465 HIS B 1481 REMARK 465 HIS B 1482 REMARK 465 SER B 1483 REMARK 465 SER B 1484 REMARK 465 GLY B 1485 REMARK 465 LEU B 1486 REMARK 465 VAL B 1487 REMARK 465 PRO B 1488 REMARK 465 ARG B 1489 REMARK 465 GLY B 1490 REMARK 465 SER B 1491 REMARK 465 HIS B 1492 REMARK 465 MSE B 1493 REMARK 465 ALA B 1494 REMARK 465 SER B 1495 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1495 OG REMARK 470 GLU A1496 CG CD OE1 OE2 REMARK 470 GLU A1532 CG CD OE1 OE2 REMARK 470 GLU A1533 CG CD OE1 OE2 REMARK 470 GLU A1534 CG CD OE1 OE2 REMARK 470 LYS A1543 CG CD CE NZ REMARK 470 LYS A1594 CG CD CE NZ REMARK 470 LYS A1597 CG CD CE NZ REMARK 470 LYS A1620 CG CD CE NZ REMARK 470 LEU B1498 CG CD1 CD2 REMARK 470 GLU B1503 CG CD OE1 OE2 REMARK 470 LYS B1505 CG CD CE NZ REMARK 470 GLN B1531 CG CD OE1 NE2 REMARK 470 GLU B1533 CG CD OE1 OE2 REMARK 470 LYS B1543 CG CD CE NZ REMARK 470 GLU B1544 CG CD OE1 OE2 REMARK 470 LYS B1545 CG CD CE NZ REMARK 470 ASP B1546 CG OD1 OD2 REMARK 470 ASN B1580 CG OD1 ND2 REMARK 470 ASN B1581 CG OD1 ND2 REMARK 470 GLU B1583 CG CD OE1 OE2 REMARK 470 ILE B1592 CG1 CG2 CD1 REMARK 470 LYS B1594 CG CD CE NZ REMARK 470 SER B1595 OG REMARK 470 LYS B1597 CG CD CE NZ REMARK 470 GLU B1609 CG CD OE1 OE2 REMARK 470 LYS B1620 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1505 CD CE NZ REMARK 480 LYS A 1586 CA CB CG CD CE NZ REMARK 480 ARG B 1603 CA CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE A MSE B 1500 O HOH B 2055 1.89 REMARK 500 CA GLY B 1596 O HOH B 2052 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1519 43.50 -145.78 REMARK 500 SER A1542 -28.23 86.30 REMARK 500 GLU A1615 144.38 -173.15 REMARK 500 SER B1542 -19.36 89.13 REMARK 500 SER B1595 -170.64 86.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1690 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1522 O REMARK 620 2 ASP A1520 OD1 92.7 REMARK 620 3 THR A1525 OG1 79.4 71.6 REMARK 620 4 GLU A1615 OE1 88.8 74.8 143.7 REMARK 620 5 THR A1525 O 96.9 133.5 65.8 150.3 REMARK 620 6 GLY A1614 O 90.1 153.3 134.8 78.7 72.2 REMARK 620 7 ASN A1517 O 177.6 86.1 102.2 88.9 85.5 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1690 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B1517 O REMARK 620 2 THR B1525 O 88.1 REMARK 620 3 THR B1525 OG1 102.8 67.9 REMARK 620 4 GLY B1614 O 93.8 70.2 134.1 REMARK 620 5 ASP B1520 OD1 83.1 134.8 71.0 154.4 REMARK 620 6 GLU B1615 OE1 90.2 147.8 143.2 77.9 76.7 REMARK 620 7 ASN B1522 O 172.3 99.4 81.7 87.4 92.5 82.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1690 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1690 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VCC RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 RELATED ID: 2VC9 RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN REMARK 900 RELATED ID: 4A43 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALNAC REMARK 900 RELATED ID: 4A44 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH THE TN ANTIGEN REMARK 900 RELATED ID: 4A41 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALACTOSE REMARK 900 RELATED ID: 4A3Z RELATED DB: PDB REMARK 900 CPGH89CBM32-4 (SELENO-METHIONINE LABELED) PRODUCED BY REMARK 900 CLOSTRIDIUM PERFRINGENS REMARK 900 RELATED ID: 4A4A RELATED DB: PDB REMARK 900 CPGH89 (E483Q, E601Q), FROM CLOSTRIDIUM PERFRINGENS, IN REMARK 900 COMPLEX WITH ITS SUBSTRATE GLCNAC-ALPHA-1,4-GALACTOSE REMARK 900 RELATED ID: 4A45 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH GALNAC-BETA-1,3-GALACTOSE REMARK 900 RELATED ID: 2VCB RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH PUGNAC REMARK 900 RELATED ID: 2VCA RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 IN COMPLEX WITH BETA-N-ACETYL-D-GLUCOSAMINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SELENOMETHIONINE DERIVATIVE DBREF 4A42 A 1496 1621 UNP Q0TST1 Q0TST1_CLOP1 1496 1621 DBREF 4A42 B 1496 1621 UNP Q0TST1 Q0TST1_CLOP1 1496 1621 SEQADV 4A42 MSE A 1473 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY A 1474 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1475 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1476 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1477 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1478 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1479 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1480 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1481 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1482 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1483 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1484 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY A 1485 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 LEU A 1486 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 VAL A 1487 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 PRO A 1488 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 ARG A 1489 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY A 1490 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1491 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS A 1492 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 MSE A 1493 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 ALA A 1494 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER A 1495 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 MSE B 1473 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY B 1474 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1475 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1476 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1477 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1478 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1479 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1480 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1481 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1482 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1483 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1484 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY B 1485 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 LEU B 1486 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 VAL B 1487 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 PRO B 1488 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 ARG B 1489 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 GLY B 1490 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1491 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 HIS B 1492 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 MSE B 1493 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 ALA B 1494 UNP Q0TST1 EXPRESSION TAG SEQADV 4A42 SER B 1495 UNP Q0TST1 EXPRESSION TAG SEQRES 1 A 149 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 149 LEU VAL PRO ARG GLY SER HIS MSE ALA SER GLU ASN LEU SEQRES 3 A 149 ALA MSE LYS ASP GLU THR LYS VAL GLU VAL THR SER ASN SEQRES 4 A 149 ASN SER GLU ALA ASN ASN LEU ARG ASP GLY ASN GLU ASN SEQRES 5 A 149 THR LEU TRP VAL PRO GLY GLN GLU GLU GLU LYS SER VAL SEQRES 6 A 149 THR PHE ASP LEU SER LYS GLU LYS ASP ILE SER ALA ILE SEQRES 7 A 149 ASP ILE VAL SER LYS GLY ASN SER PRO LEU LYS TYR SER SEQRES 8 A 149 ILE GLU ILE SER ASN ASP GLY THR GLU TRP THR LYS ILE SEQRES 9 A 149 VAL ASP GLU ASN ASN ASN GLU GLU ASN LYS ALA VAL TYR SEQRES 10 A 149 SER ASN ILE LEU LYS SER GLY LYS ILE GLY ARG PHE VAL SEQRES 11 A 149 ARG PHE ASN PHE ASN SER GLU ASN VAL LYS ILE GLY GLU SEQRES 12 A 149 ILE LYS ILE TYR LYS GLY SEQRES 1 B 149 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 149 LEU VAL PRO ARG GLY SER HIS MSE ALA SER GLU ASN LEU SEQRES 3 B 149 ALA MSE LYS ASP GLU THR LYS VAL GLU VAL THR SER ASN SEQRES 4 B 149 ASN SER GLU ALA ASN ASN LEU ARG ASP GLY ASN GLU ASN SEQRES 5 B 149 THR LEU TRP VAL PRO GLY GLN GLU GLU GLU LYS SER VAL SEQRES 6 B 149 THR PHE ASP LEU SER LYS GLU LYS ASP ILE SER ALA ILE SEQRES 7 B 149 ASP ILE VAL SER LYS GLY ASN SER PRO LEU LYS TYR SER SEQRES 8 B 149 ILE GLU ILE SER ASN ASP GLY THR GLU TRP THR LYS ILE SEQRES 9 B 149 VAL ASP GLU ASN ASN ASN GLU GLU ASN LYS ALA VAL TYR SEQRES 10 B 149 SER ASN ILE LEU LYS SER GLY LYS ILE GLY ARG PHE VAL SEQRES 11 B 149 ARG PHE ASN PHE ASN SER GLU ASN VAL LYS ILE GLY GLU SEQRES 12 B 149 ILE LYS ILE TYR LYS GLY MODRES 4A42 MSE A 1500 MET SELENOMETHIONINE MODRES 4A42 MSE B 1500 MET SELENOMETHIONINE HET MSE A1500 13 HET CA A1690 1 HET MSE B1500 13 HET CA B1690 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 3 MSE 2(C5 H11 N O2 SE) FORMUL 4 CA 2(CA 2+) FORMUL 5 HOH *174(H2 O) HELIX 1 1 ALA A 1499 LYS A 1501 5 3 HELIX 2 2 ASN A 1511 ASP A 1520 5 10 HELIX 3 3 LEU B 1498 LYS B 1501 5 4 HELIX 4 4 ASN B 1511 ASP B 1520 5 10 SHEET 1 AA 4 GLU A1496 ASN A1497 0 SHEET 2 AA 4 ILE A1613 LYS A1620 -1 O LYS A1620 N GLU A1496 SHEET 3 AA 4 ALA A1549 SER A1554 -1 O ALA A1549 N TYR A1619 SHEET 4 AA 4 VAL A1588 ILE A1592 -1 O TYR A1589 N ILE A1552 SHEET 1 AB10 LYS A1505 VAL A1508 0 SHEET 2 AB10 LYS A1535 ASP A1546 -1 O THR A1538 N GLU A1507 SHEET 3 AB10 ILE A1598 PHE A1606 -1 O GLY A1599 N LYS A1545 SHEET 4 AB10 TYR A1562 SER A1567 -1 O SER A1563 N ASN A1605 SHEET 5 AB10 THR A1574 GLU A1579 -1 O THR A1574 N ILE A1566 SHEET 6 AB10 TRP B1573 GLU B1579 -1 O TRP B1573 N LYS A1575 SHEET 7 AB10 TYR B1562 SER B1567 -1 O TYR B1562 N GLU B1579 SHEET 8 AB10 VAL B1588 PHE B1606 -1 N ARG B1600 O SER B1567 SHEET 9 AB10 LYS B1535 SER B1554 -1 O LYS B1535 N PHE B1606 SHEET 10 AB10 ILE B1613 LYS B1620 -1 N GLY B1614 O VAL B1553 SHEET 1 AC10 LYS A1505 VAL A1508 0 SHEET 2 AC10 LYS A1535 ASP A1546 -1 O THR A1538 N GLU A1507 SHEET 3 AC10 ILE A1598 PHE A1606 -1 O GLY A1599 N LYS A1545 SHEET 4 AC10 TYR A1562 SER A1567 -1 O SER A1563 N ASN A1605 SHEET 5 AC10 THR A1574 GLU A1579 -1 O THR A1574 N ILE A1566 SHEET 6 AC10 TRP B1573 GLU B1579 -1 O TRP B1573 N LYS A1575 SHEET 7 AC10 TYR B1562 SER B1567 -1 O TYR B1562 N GLU B1579 SHEET 8 AC10 VAL B1588 PHE B1606 -1 N ARG B1600 O SER B1567 SHEET 9 AC10 LYS B1535 SER B1554 -1 O LYS B1535 N PHE B1606 SHEET 10 AC10 LYS B1505 VAL B1508 -1 O LYS B1505 N ASP B1540 SHEET 1 BA 2 ILE B1613 LYS B1620 0 SHEET 2 BA 2 LYS B1535 SER B1554 -1 N SER B1548 O TYR B1619 LINK N MSE A1500 C ALA A1499 1555 1555 1.33 LINK C MSE A1500 N LYS A1501 1555 1555 1.33 LINK CA CA A1690 O ASN A1522 1555 1555 2.32 LINK CA CA A1690 OD1 ASP A1520 1555 1555 2.45 LINK CA CA A1690 OG1 THR A1525 1555 1555 2.52 LINK CA CA A1690 OE1 GLU A1615 1555 1555 2.50 LINK CA CA A1690 O THR A1525 1555 1555 2.60 LINK CA CA A1690 O GLY A1614 1555 1555 2.32 LINK CA CA A1690 O ASN A1517 1555 1555 2.31 LINK N MSE B1500 C ALA B1499 1555 1555 1.32 LINK C MSE B1500 N LYS B1501 1555 1555 1.33 LINK CA CA B1690 O THR B1525 1555 1555 2.53 LINK CA CA B1690 OG1 THR B1525 1555 1555 2.43 LINK CA CA B1690 O GLY B1614 1555 1555 2.39 LINK CA CA B1690 OD1 ASP B1520 1555 1555 2.48 LINK CA CA B1690 OE1 GLU B1615 1555 1555 2.52 LINK CA CA B1690 O ASN B1522 1555 1555 2.31 LINK CA CA B1690 O ASN B1517 1555 1555 2.33 SITE 1 AC1 6 ASN A1517 ASP A1520 ASN A1522 THR A1525 SITE 2 AC1 6 GLY A1614 GLU A1615 SITE 1 AC2 6 ASN B1517 ASP B1520 ASN B1522 THR B1525 SITE 2 AC2 6 GLY B1614 GLU B1615 CRYST1 48.810 48.810 98.180 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010185 0.00000