HEADER HYDROLASE 06-OCT-11 4A44 TITLE CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH THE TN TITLE 2 ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBM32-5, RESIDUES 1356-1493; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: CYK96_07800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, FAMILY 89 GLYCOSIDE HYDROLASE, FAMILY 32 CARBOHYDRATE- KEYWDS 2 BINDING MODULE EXPDTA X-RAY DIFFRACTION AUTHOR E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER,R.J.WOODS, AUTHOR 2 A.B.BORASTON REVDAT 5 07-DEC-22 4A44 1 HETSYN LINK REVDAT 4 29-JUL-20 4A44 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 01-JUL-20 4A44 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV HET HETNAM FORMUL REVDAT 3 3 1 LINK SITE ATOM REVDAT 2 18-APR-12 4A44 1 JRNL REVDAT 1 04-APR-12 4A44 0 JRNL AUTH E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER, JRNL AUTH 2 R.J.WOODS,A.B.BORASTON JRNL TITL CARBOHYDRATE RECOGNITION BY AN ARCHITECTURALLY COMPLEX JRNL TITL 2 ALPHA-N-ACETYLGLUCOSAMINIDASE FROM CLOSTRIDIUM PERFRINGENS. JRNL REF PLOS ONE V. 7 33524 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22479408 JRNL DOI 10.1371/JOURNAL.PONE.0033524 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 13562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1124 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1526 ; 1.801 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ;15.195 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;36.587 ;25.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;12.221 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 9.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 853 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 552 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 767 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.198 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.314 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.409 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 704 ; 0.800 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1123 ; 1.392 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 434 ; 2.179 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 401 ; 3.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC R-AXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.71500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.71500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1333 REMARK 465 GLY A 1334 REMARK 465 SER A 1335 REMARK 465 SER A 1336 REMARK 465 HIS A 1337 REMARK 465 HIS A 1338 REMARK 465 HIS A 1339 REMARK 465 HIS A 1340 REMARK 465 HIS A 1341 REMARK 465 HIS A 1342 REMARK 465 SER A 1343 REMARK 465 SER A 1344 REMARK 465 GLY A 1345 REMARK 465 LEU A 1346 REMARK 465 VAL A 1347 REMARK 465 PRO A 1348 REMARK 465 ARG A 1349 REMARK 465 GLY A 1350 REMARK 465 SER A 1351 REMARK 465 HIS A 1352 REMARK 465 MET A 1353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1387 CD OE1 OE2 REMARK 470 ASN A1396 CG OD1 ND2 REMARK 470 LYS A1468 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1755 O HOH A 1769 1.41 REMARK 500 C4 CIT A 1505 O HOH A 1739 2.06 REMARK 500 O HOH A 1727 O HOH A 1787 2.12 REMARK 500 OD2 ASP A 1455 O HOH A 1601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1818 O HOH A 1824 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A1375 CG ASN A1375 ND2 -0.175 REMARK 500 GLU A1376 CD GLU A1376 OE2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A1395 30.50 -151.88 REMARK 500 ASN A1416 -0.67 -146.11 REMARK 500 ARG A1423 154.39 -49.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 1395 ASN A 1396 146.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A1395 -13.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1825 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1826 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A1381 O REMARK 620 2 ASP A1384 OD1 78.5 REMARK 620 3 LYS A1386 O 167.8 95.1 REMARK 620 4 THR A1389 O 91.4 141.2 87.2 REMARK 620 5 THR A1389 OG1 86.4 69.8 81.6 72.3 REMARK 620 6 ALA A1487 O 85.4 136.5 106.2 78.6 149.5 REMARK 620 7 GLU A1488 OE2 103.0 72.1 84.6 146.4 137.9 72.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1408 OE1 REMARK 620 2 HIS A1471 NE2 109.9 REMARK 620 3 GLU A1478 OE2 92.5 97.6 REMARK 620 4 GLU A1478 OE1 133.2 98.3 46.1 REMARK 620 5 HOH A1760 O 81.3 90.3 171.3 136.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1440 OE2 REMARK 620 2 GLU A1440 OE1 47.4 REMARK 620 3 CIT A1505 O7 133.3 170.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A42 RELATED DB: PDB REMARK 900 CPGH89CBM32-6 PRODUCED BY CLOSTRIDIUM PERFRINGENS REMARK 900 RELATED ID: 2VCC RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS REMARK 900 RELATED ID: 2VC9 RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN REMARK 900 COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN REMARK 900 RELATED ID: 4A43 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALNAC REMARK 900 RELATED ID: 4A3Z RELATED DB: PDB REMARK 900 CPGH89CBM32-4 (SELENO-METHIONINE LABELED) PRODUCED BY CLOSTRIDIUM REMARK 900 PERFRINGENS REMARK 900 RELATED ID: 4A4A RELATED DB: PDB REMARK 900 CPGH89 (E483Q, E601Q), FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX REMARK 900 WITH ITS SUBSTRATE GLCNAC-ALPHA-1,4-GALACTOSE REMARK 900 RELATED ID: 4A41 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH REMARK 900 GALACTOSE REMARK 900 RELATED ID: 2VCB RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN REMARK 900 COMPLEX WITH PUGNAC REMARK 900 RELATED ID: 4A45 RELATED DB: PDB REMARK 900 CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALNAC- REMARK 900 BETA-1,3-GALACTOSE REMARK 900 RELATED ID: 2VCA RELATED DB: PDB REMARK 900 FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN REMARK 900 COMPLEX WITH BETA-N-ACETYL-D-GLUCOSAMINE REMARK 900 RELATED ID: 4A40 RELATED DB: PDB REMARK 900 CPGH89CBM32-4, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GLCNAC- REMARK 900 ALPHA-1,4-GALACTOSE DBREF1 4A44 A 1356 1493 UNP A0A2Z3TXF1_CLOPF DBREF2 4A44 A A0A2Z3TXF1 1365 1502 SEQADV 4A44 MET A 1333 UNP A0A2Z3TXF INITIATING METHIONINE SEQADV 4A44 GLY A 1334 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1335 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1336 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1337 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1338 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1339 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1340 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1341 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1342 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1343 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1344 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 GLY A 1345 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 LEU A 1346 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 VAL A 1347 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 PRO A 1348 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 ARG A 1349 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 GLY A 1350 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1351 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 HIS A 1352 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 MET A 1353 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 ALA A 1354 UNP A0A2Z3TXF EXPRESSION TAG SEQADV 4A44 SER A 1355 UNP A0A2Z3TXF EXPRESSION TAG SEQRES 1 A 161 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 161 LEU VAL PRO ARG GLY SER HIS MET ALA SER ALA LEU PRO SEQRES 3 A 161 GLN GLY ASN MET LYS ALA THR ALA THR SER GLU HIS PRO SEQRES 4 A 161 ASP VAL GLY ASN GLU GLY LEU ALA LYS PHE ALA ILE ASP SEQRES 5 A 161 GLY LYS GLU ASN THR ILE TRP HIS THR LYS TYR ASN PRO SEQRES 6 A 161 VAL GLU GLU LEU PRO GLN SER ILE THR LEU GLU LEU GLY SEQRES 7 A 161 GLY SER TYR GLU ILE ASN LYS PHE THR TYR LEU PRO ARG SEQRES 8 A 161 SER GLY ALA LYS ASN GLY ASN ILE THR LYS TYR GLU LEU SEQRES 9 A 161 HIS VAL SER GLU ASP GLY ASN ASN PHE ARG LYS ILE SER SEQRES 10 A 161 GLU GLY ASN TRP ASP ASP SER GLY SER LEU LYS THR LEU SEQRES 11 A 161 LYS PHE ASN SER THR LYS ALA THR HIS VAL LYS LEU VAL SEQRES 12 A 161 ALA LEU GLU GLY VAL GLY GLY PHE ALA SER ALA ALA GLU SEQRES 13 A 161 LEU ASN VAL PHE ALA HET CA A1501 1 HET NA A1502 1 HET NA A1503 1 HET NA A1504 1 HET CIT A1505 13 HET SER A1506 7 HET A2G A1507 14 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CIT CITRIC ACID HETNAM SER SERINE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 2 CA CA 2+ FORMUL 3 NA 3(NA 1+) FORMUL 6 CIT C6 H8 O7 FORMUL 7 SER C3 H7 N O3 FORMUL 8 A2G C8 H15 N O6 FORMUL 9 HOH *226(H2 O) HELIX 1 1 PRO A 1358 MET A 1362 5 5 HELIX 2 2 LEU A 1378 ASP A 1384 5 7 HELIX 3 3 GLY A 1481 PHE A 1483 5 3 SHEET 1 AA 6 SER A1355 ALA A1356 0 SHEET 2 AA 6 GLU A1488 ALA A1493 -1 O ALA A1493 N SER A1355 SHEET 3 AA 6 GLN A1403 LEU A1421 -1 N ASN A1416 O PHE A1492 SHEET 4 AA 6 LYS A1460 GLY A1479 -1 O LYS A1460 N TYR A1420 SHEET 5 AA 6 ILE A1431 SER A1439 -1 N THR A1432 O GLU A1478 SHEET 6 AA 6 ARG A1446 ASN A1452 -1 O ARG A1446 N VAL A1438 SHEET 1 AB 4 SER A1355 ALA A1356 0 SHEET 2 AB 4 GLU A1488 ALA A1493 -1 O ALA A1493 N SER A1355 SHEET 3 AB 4 GLN A1403 LEU A1421 -1 N ASN A1416 O PHE A1492 SHEET 4 AB 4 LYS A1363 ALA A1366 -1 O LYS A1363 N GLU A1408 SHEET 1 AC 2 TRP A1391 HIS A1392 0 SHEET 2 AC 2 SER A1485 ALA A1486 -1 O ALA A1486 N TRP A1391 LINK OG SER A1506 C1 A2G A1507 1555 1555 1.44 LINK O PHE A1381 CA CA A1501 1555 1555 2.29 LINK OD1 ASP A1384 CA CA A1501 1555 1555 2.46 LINK O LYS A1386 CA CA A1501 1555 1555 2.32 LINK O THR A1389 CA CA A1501 1555 1555 2.40 LINK OG1 THR A1389 CA CA A1501 1555 1555 2.52 LINK OE1 GLU A1408 NA NA A1502 1555 1555 2.18 LINK OE2 GLU A1440 NA NA A1504 4454 1555 2.69 LINK OE1 GLU A1440 NA NA A1504 4454 1555 2.76 LINK NE2 HIS A1471 NA NA A1502 1555 1555 2.07 LINK OE2 GLU A1478 NA NA A1502 3554 1555 2.00 LINK OE1 GLU A1478 NA NA A1502 3554 1555 3.06 LINK O ALA A1487 CA CA A1501 1555 1555 2.44 LINK OE2 GLU A1488 CA CA A1501 1555 1555 2.30 LINK NA NA A1502 O HOH A1760 1555 1555 2.70 LINK NA NA A1503 O4 CIT A1505 1555 1555 3.07 LINK NA NA A1504 O7 CIT A1505 1555 1555 2.59 CISPEP 1 GLU A 1376 GLY A 1377 0 4.10 CISPEP 2 ASN A 1396 PRO A 1397 0 -1.04 CISPEP 3 LEU A 1401 PRO A 1402 0 -0.84 CRYST1 31.800 59.260 67.430 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014830 0.00000