HEADER RNA BINDING PROTEIN 12-OCT-11 4A4G TITLE SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH ASYMMETRICALLY TITLE 2 DIMETHYLATED ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURVIVAL MOTOR NEURON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN, RESIDUES 84-147; COMPND 5 SYNONYM: SURVIVAL MOTOR NEURON PROTEIN SMN, COMPONENT OF GEMS 1, COMPND 6 GEMIN-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT,U.FISCHER, AUTHOR 2 K.M.NEUGEBAUER,M.SATTLER REVDAT 5 15-NOV-23 4A4G 1 REMARK ATOM REVDAT 4 06-NOV-13 4A4G 1 REMARK HETATM REVDAT 3 28-DEC-11 4A4G 1 ATOM REVDAT 2 14-DEC-11 4A4G 1 JRNL REVDAT 1 30-NOV-11 4A4G 0 JRNL AUTH K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT, JRNL AUTH 2 U.FISCHER,K.M.NEUGEBAUER,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR DIMETHYL-ARGININE RECOGNITION BY THE JRNL TITL 2 TUDOR DOMAINS OF HUMAN SMN AND SPF30 PROTEINS JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1414 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22101937 JRNL DOI 10.1038/NSMB.2185 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SET OF NOE DISTANCE RESTRAINTS REMARK 3 DERIVED FROM CYANA, PHI AND PSI BACKBONE DIHEDRAL ANGLE REMARK 3 RESTRAINTS DERIVED FROM TALOS BASED ON THE CHEMICAL SHIFTS, AND REMARK 3 HYDROGEN BONDS WERE USED FOR WATER REFINEMENT USING CNS REMARK 4 REMARK 4 4A4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049973. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0; 298.0; REMARK 210 298.0; 298.0 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50; 50; 50; 50; 50; 50 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM; 1.0 REMARK 210 ATM; 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 93% WATER/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED 3D NOESY; F1 15N/13C REMARK 210 FILTERED; 15N- EDITED 3D NOESY; REMARK 210 13C- EDITED 3D NOESY (ALIPHATICS) REMARK 210 ; 13C-EDITED 3D NOESY REMARK 210 (ALIPHATICS); 13C- EDITED 3D REMARK 210 NOESY (AROMATICS); 13C-EDITED 3D REMARK 210 NOESY (AROMATICS) REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, CYANA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 105 HG CYS A 107 1.53 REMARK 500 HG SER A 103 OE1 GLU A 134 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 144 -177.76 -66.61 REMARK 500 1 CYS A 146 42.34 -89.07 REMARK 500 2 SER A 88 24.01 -144.90 REMARK 500 5 ALA A 86 -77.54 -118.22 REMARK 500 6 LEU A 89 23.56 -74.75 REMARK 500 7 ALA A 86 -40.99 77.13 REMARK 500 8 SER A 88 32.62 -145.19 REMARK 500 9 SER A 88 20.47 -78.52 REMARK 500 10 ALA A 86 -3.11 74.13 REMARK 500 11 ILE A 145 -167.05 -110.79 REMARK 500 12 ALA A 87 75.67 59.46 REMARK 500 13 ALA A 86 -48.84 -170.79 REMARK 500 14 LEU A 89 22.24 -141.68 REMARK 500 15 THR A 85 76.24 65.39 REMARK 500 17 ALA A 86 -40.48 177.87 REMARK 500 18 THR A 85 90.13 60.41 REMARK 500 18 ALA A 87 38.94 -90.40 REMARK 500 18 LEU A 89 31.45 -75.11 REMARK 500 19 ALA A 86 -33.15 -133.46 REMARK 500 20 THR A 85 77.57 61.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DA2 A 1148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G5V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF THE HUMAN SMNPROTEIN REMARK 900 RELATED ID: 4A4E RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH REMARK 900 SYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 1MHN RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF THE SMN TUDOR DOMAIN REMARK 900 RELATED ID: 18007 RELATED DB: BMRB DBREF 4A4G A 84 147 UNP Q16637 SMN_HUMAN 84 147 SEQRES 1 A 64 ASN THR ALA ALA SER LEU GLN GLN TRP LYS VAL GLY ASP SEQRES 2 A 64 LYS CYS SER ALA ILE TRP SER GLU ASP GLY CYS ILE TYR SEQRES 3 A 64 PRO ALA THR ILE ALA SER ILE ASP PHE LYS ARG GLU THR SEQRES 4 A 64 CYS VAL VAL VAL TYR THR GLY TYR GLY ASN ARG GLU GLU SEQRES 5 A 64 GLN ASN LEU SER ASP LEU LEU SER PRO ILE CYS GLU HET DA2 A1148 33 HETNAM DA2 NG,NG-DIMETHYL-L-ARGININE HETSYN DA2 ADMA FORMUL 2 DA2 C8 H18 N4 O2 SHEET 1 AA 4 LYS A 97 ILE A 101 0 SHEET 2 AA 4 ILE A 108 ASP A 117 -1 O TYR A 109 N ALA A 100 SHEET 3 AA 4 THR A 122 TYR A 127 -1 O THR A 122 N ASP A 117 SHEET 4 AA 4 ARG A 133 ASN A 137 -1 O GLU A 134 N VAL A 125 SITE 1 AC1 5 TRP A 102 TYR A 109 TYR A 127 TYR A 130 SITE 2 AC1 5 ASN A 132 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1