data_4A4Q # _entry.id 4A4Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A4Q PDBE EBI-50013 WWPDB D_1290050013 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GNO unspecified 'HIV-1 PROTEASE (WILD TYPE) COMPLEXED WITH U89360E (INHIBITOR)' PDB 2CEM unspecified ;P1' EXTENDED HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL IN THE TRANSITION-STATE MIMICKING SCAFFOLD ; PDB 2CEJ unspecified ;P1' EXTENDED HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL IN THE TRANSITION-STATE MIMICKING SCAFFOLD ; PDB 1ZPA unspecified 'HIV PROTEASE WITH SCRIPPS AB-3 INHIBITOR' PDB 1WBM unspecified 'HIV-1 PROTEASE IN COMPLEX WITH SYMMETRIC INHIBITOR, BEA450' PDB 1WBK unspecified 'HIV-1 PROTEASE IN COMPLEX WITH ASYMMETRIC INHIBITOR, BEA568' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A4Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-10-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wu, X.' 1 'Ohrngren, P.' 2 'Joshi, A.A.' 3 'Trejos, A.' 4 'Persson, M.' 5 'Arvela, R.K.' 6 'Wallberg, H.' 7 'Vrang, L.' 8 'Rosenquist, A.' 9 'Samuelsson, B.' 10 'Unge, J.' 11 'Larhed, M.' 12 # _citation.id primary _citation.title 'Synthesis, X-Ray Analysis, and Biological Evaluation of a New Class of Stereopure Lactam-Based HIV-1 Protease Inhibitors.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 2724 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22376008 _citation.pdbx_database_id_DOI 10.1021/JM201620T # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wu, X.' 1 primary 'Ohrngren, P.' 2 primary 'Joshi, A.A.' 3 primary 'Trejos, A.' 4 primary 'Persson, M.' 5 primary 'Arvela, R.K.' 6 primary 'Wallberg, H.' 7 primary 'Vrang, L.' 8 primary 'Rosenquist, A.' 9 primary 'Samuelsson, B.B.' 10 primary 'Unge, J.' 11 primary 'Larhed, M.' 12 # _cell.entry_id 4A4Q _cell.length_a 58.374 _cell.length_b 86.005 _cell.length_c 46.536 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A4Q _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PROTEASE 10775.659 2 3.4.23.16 ? ? ? 2 non-polymer syn ;methyl [(2S)-1-{2-(2-{(3R,4S)-3-benzyl-4-hydroxy-1-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-oxopyrrolidin-3-yl}ethyl)-2-[4-(pyridin-4-yl)benzyl]hydrazinyl}-3,3-dimethyl-1-oxobutan-2-yl]carbamate ; 719.868 1 ? ? ? ? 3 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PTNVIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PTNVIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 PRO n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 THR n 1 83 ASN n 1 84 VAL n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 99HHP1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HUMAN IMMUNODEFICIENCY VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12721 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8Q3H0_9HIV1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8Q3H0 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4A4Q A 1 ? 99 ? Q8Q3H0 1 ? 99 ? 1 99 2 1 4A4Q B 1 ? 99 ? Q8Q3H0 1 ? 99 ? 101 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A4Q PRO A 63 ? UNP Q8Q3H0 LEU 63 conflict 63 1 1 4A4Q THR A 82 ? UNP Q8Q3H0 VAL 82 conflict 82 2 1 4A4Q VAL A 84 ? UNP Q8Q3H0 ILE 84 conflict 84 3 2 4A4Q PRO B 63 ? UNP Q8Q3H0 LEU 63 conflict 163 4 2 4A4Q THR B 82 ? UNP Q8Q3H0 VAL 82 conflict 182 5 2 4A4Q VAL B 84 ? UNP Q8Q3H0 ILE 84 conflict 184 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UX9 non-polymer . ;methyl [(2S)-1-{2-(2-{(3R,4S)-3-benzyl-4-hydroxy-1-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-oxopyrrolidin-3-yl}ethyl)-2-[4-(pyridin-4-yl)benzyl]hydrazinyl}-3,3-dimethyl-1-oxobutan-2-yl]carbamate ; ? 'C42 H49 N5 O6' 719.868 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A4Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_percent_sol 54.62 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARRESEARCH SX-165' _diffrn_detector.pdbx_collection_date 2007-12-12 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-2' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-2 _diffrn_source.pdbx_wavelength 1.03790 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A4Q _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.30 _reflns.d_resolution_high 1.80 _reflns.number_obs 18880 _reflns.number_all ? _reflns.percent_possible_obs 86.3 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.30 _reflns.B_iso_Wilson_estimate 8.3 _reflns.pdbx_redundancy 4.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 89.7 _reflns_shell.Rmerge_I_obs 0.14 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 4.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A4Q _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18873 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1235760.73 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.72 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 84.3 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.201 _refine.ls_R_factor_R_free 0.233 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 951 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 13.7 _refine.aniso_B[1][1] 2.88 _refine.aniso_B[2][2] -2.19 _refine.aniso_B[3][3] -0.68 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.42 _refine.solvent_model_param_bsol 55.2793 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'HIV-1 PROTEASE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4A4Q _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.18 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1512 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 1742 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 18.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 3095 _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.percent_reflns_obs 88.5 _refine_ls_shell.R_factor_R_free 0.301 _refine_ls_shell.R_factor_R_free_error 0.024 _refine_ls_shell.percent_reflns_R_free 4.7 _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 5 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 6 INH.PAR INH.TOP # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4A4Q _struct.title 'Stereoselective Synthesis, X-ray Analysis, and Biological Evaluation of a New Class of Lactam Based HIV-1 Protease Inhibitors' _struct.pdbx_descriptor 'PROTEASE (E.C.3.4.23.16)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A4Q _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, GAMMA-BUTYROL-LACTAM, INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 186 THR B 191 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 8 ? BA ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel AB 5 6 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? anti-parallel BA 4 5 ? parallel BA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 AA 2 THR B 96 ? ASN B 98 ? THR B 196 ASN B 198 AA 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 AA 4 GLN B 2 ? THR B 4 ? GLN B 102 THR B 104 AB 1 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 AB 2 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 AB 3 VAL A 84 ? ILE A 85 ? VAL A 84 ILE A 85 AB 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 AB 5 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 AB 6 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 AB 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 BA 1 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 BA 2 GLN B 18 ? LEU B 24 ? GLN B 118 LEU B 124 BA 3 VAL B 84 ? ILE B 85 ? VAL B 184 ILE B 185 BA 4 VAL B 32 ? LEU B 33 ? VAL B 132 LEU B 133 BA 5 HIS B 69 ? VAL B 77 ? HIS B 169 VAL B 177 BA 6 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 BA 7 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 197 AA 2 3 N ASN B 98 ? N ASN B 198 O THR A 96 ? O THR A 96 AA 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 103 AB 1 2 N ILE A 15 ? N ILE A 15 O GLN A 18 ? O GLN A 18 AB 2 3 O LEU A 23 ? O LEU A 23 N ILE A 85 ? N ILE A 85 AB 3 4 N VAL A 84 ? N VAL A 84 O VAL A 32 ? O VAL A 32 AB 4 5 N LEU A 33 ? N LEU A 33 O LEU A 76 ? O LEU A 76 AB 5 6 N VAL A 77 ? N VAL A 77 O ARG A 57 ? O ARG A 57 BA 1 2 N ILE B 15 ? N ILE B 115 O GLN B 18 ? O GLN B 118 BA 2 3 O LEU B 23 ? O LEU B 123 N ILE B 85 ? N ILE B 185 BA 3 4 N VAL B 84 ? N VAL B 184 O VAL B 32 ? O VAL B 132 BA 4 5 N LEU B 33 ? N LEU B 133 O LEU B 76 ? O LEU B 176 BA 5 6 N VAL B 77 ? N VAL B 177 O ARG B 57 ? O ARG B 157 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 22 _struct_site.details 'BINDING SITE FOR RESIDUE UX9 A 1100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 22 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 22 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 22 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 22 ASP A 30 ? ASP A 30 . ? 1_555 ? 6 AC1 22 VAL A 32 ? VAL A 32 . ? 1_555 ? 7 AC1 22 GLY A 48 ? GLY A 48 . ? 1_555 ? 8 AC1 22 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 22 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 22 PRO A 81 ? PRO A 81 . ? 1_555 ? 11 AC1 22 THR A 82 ? THR A 82 . ? 1_555 ? 12 AC1 22 HOH D . ? HOH A 2051 . ? 1_555 ? 13 AC1 22 HOH D . ? HOH A 2084 . ? 1_555 ? 14 AC1 22 HOH D . ? HOH A 2085 . ? 1_555 ? 15 AC1 22 ASP B 25 ? ASP B 125 . ? 1_555 ? 16 AC1 22 GLY B 27 ? GLY B 127 . ? 1_555 ? 17 AC1 22 ASP B 29 ? ASP B 129 . ? 1_555 ? 18 AC1 22 ILE B 47 ? ILE B 147 . ? 1_555 ? 19 AC1 22 GLY B 48 ? GLY B 148 . ? 1_555 ? 20 AC1 22 GLY B 49 ? GLY B 149 . ? 1_555 ? 21 AC1 22 PRO B 81 ? PRO B 181 . ? 1_555 ? 22 AC1 22 THR B 82 ? THR B 182 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A4Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A4Q _atom_sites.fract_transf_matrix[1][1] 0.017131 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011627 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021489 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 101 101 PRO PRO B . n B 1 2 GLN 2 102 102 GLN GLN B . n B 1 3 ILE 3 103 103 ILE ILE B . n B 1 4 THR 4 104 104 THR THR B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 TRP 6 106 106 TRP TRP B . n B 1 7 GLN 7 107 107 GLN GLN B . n B 1 8 ARG 8 108 108 ARG ARG B . n B 1 9 PRO 9 109 109 PRO PRO B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 VAL 11 111 111 VAL VAL B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 ILE 13 113 113 ILE ILE B . n B 1 14 LYS 14 114 114 LYS LYS B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 GLY 16 116 116 GLY GLY B . n B 1 17 GLY 17 117 117 GLY GLY B . n B 1 18 GLN 18 118 118 GLN GLN B . n B 1 19 LEU 19 119 119 LEU LEU B . n B 1 20 LYS 20 120 120 LYS LYS B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 ALA 22 122 122 ALA ALA B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 ASP 25 125 125 ASP ASP B . n B 1 26 THR 26 126 126 THR THR B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ALA 28 128 128 ALA ALA B . n B 1 29 ASP 29 129 129 ASP ASP B . n B 1 30 ASP 30 130 130 ASP ASP B . n B 1 31 THR 31 131 131 THR THR B . n B 1 32 VAL 32 132 132 VAL VAL B . n B 1 33 LEU 33 133 133 LEU LEU B . n B 1 34 GLU 34 134 134 GLU GLU B . n B 1 35 GLU 35 135 135 GLU GLU B . n B 1 36 MET 36 136 136 MET MET B . n B 1 37 SER 37 137 137 SER SER B . n B 1 38 LEU 38 138 138 LEU LEU B . n B 1 39 PRO 39 139 139 PRO PRO B . n B 1 40 GLY 40 140 140 GLY GLY B . n B 1 41 ARG 41 141 141 ARG ARG B . n B 1 42 TRP 42 142 142 TRP TRP B . n B 1 43 LYS 43 143 143 LYS LYS B . n B 1 44 PRO 44 144 144 PRO PRO B . n B 1 45 LYS 45 145 145 LYS LYS B . n B 1 46 MET 46 146 146 MET MET B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLY 48 148 148 GLY GLY B . n B 1 49 GLY 49 149 149 GLY GLY B . n B 1 50 ILE 50 150 150 ILE ILE B . n B 1 51 GLY 51 151 151 GLY GLY B . n B 1 52 GLY 52 152 152 GLY GLY B . n B 1 53 PHE 53 153 153 PHE PHE B . n B 1 54 ILE 54 154 154 ILE ILE B . n B 1 55 LYS 55 155 155 LYS LYS B . n B 1 56 VAL 56 156 156 VAL VAL B . n B 1 57 ARG 57 157 157 ARG ARG B . n B 1 58 GLN 58 158 158 GLN GLN B . n B 1 59 TYR 59 159 159 TYR TYR B . n B 1 60 ASP 60 160 160 ASP ASP B . n B 1 61 GLN 61 161 161 GLN GLN B . n B 1 62 ILE 62 162 162 ILE ILE B . n B 1 63 PRO 63 163 163 PRO PRO B . n B 1 64 ILE 64 164 164 ILE ILE B . n B 1 65 GLU 65 165 165 GLU GLU B . n B 1 66 ILE 66 166 166 ILE ILE B . n B 1 67 CYS 67 167 167 CYS CYS B . n B 1 68 GLY 68 168 168 GLY GLY B . n B 1 69 HIS 69 169 169 HIS HIS B . n B 1 70 LYS 70 170 170 LYS LYS B . n B 1 71 ALA 71 171 171 ALA ALA B . n B 1 72 ILE 72 172 172 ILE ILE B . n B 1 73 GLY 73 173 173 GLY GLY B . n B 1 74 THR 74 174 174 THR THR B . n B 1 75 VAL 75 175 175 VAL VAL B . n B 1 76 LEU 76 176 176 LEU LEU B . n B 1 77 VAL 77 177 177 VAL VAL B . n B 1 78 GLY 78 178 178 GLY GLY B . n B 1 79 PRO 79 179 179 PRO PRO B . n B 1 80 THR 80 180 180 THR THR B . n B 1 81 PRO 81 181 181 PRO PRO B . n B 1 82 THR 82 182 182 THR THR B . n B 1 83 ASN 83 183 183 ASN ASN B . n B 1 84 VAL 84 184 184 VAL VAL B . n B 1 85 ILE 85 185 185 ILE ILE B . n B 1 86 GLY 86 186 186 GLY GLY B . n B 1 87 ARG 87 187 187 ARG ARG B . n B 1 88 ASN 88 188 188 ASN ASN B . n B 1 89 LEU 89 189 189 LEU LEU B . n B 1 90 LEU 90 190 190 LEU LEU B . n B 1 91 THR 91 191 191 THR THR B . n B 1 92 GLN 92 192 192 GLN GLN B . n B 1 93 ILE 93 193 193 ILE ILE B . n B 1 94 GLY 94 194 194 GLY GLY B . n B 1 95 CYS 95 195 195 CYS CYS B . n B 1 96 THR 96 196 196 THR THR B . n B 1 97 LEU 97 197 197 LEU LEU B . n B 1 98 ASN 98 198 198 ASN ASN B . n B 1 99 PHE 99 199 199 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UX9 1 1100 1100 UX9 UX9 A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . D 3 HOH 13 2013 2013 HOH HOH A . D 3 HOH 14 2014 2014 HOH HOH A . D 3 HOH 15 2015 2015 HOH HOH A . D 3 HOH 16 2016 2016 HOH HOH A . D 3 HOH 17 2017 2017 HOH HOH A . D 3 HOH 18 2018 2018 HOH HOH A . D 3 HOH 19 2019 2019 HOH HOH A . D 3 HOH 20 2020 2020 HOH HOH A . D 3 HOH 21 2021 2021 HOH HOH A . D 3 HOH 22 2022 2022 HOH HOH A . D 3 HOH 23 2023 2023 HOH HOH A . D 3 HOH 24 2024 2024 HOH HOH A . D 3 HOH 25 2025 2025 HOH HOH A . D 3 HOH 26 2026 2026 HOH HOH A . D 3 HOH 27 2027 2027 HOH HOH A . D 3 HOH 28 2028 2028 HOH HOH A . D 3 HOH 29 2029 2029 HOH HOH A . D 3 HOH 30 2030 2030 HOH HOH A . D 3 HOH 31 2031 2031 HOH HOH A . D 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 33 2033 2033 HOH HOH A . D 3 HOH 34 2034 2034 HOH HOH A . D 3 HOH 35 2035 2035 HOH HOH A . D 3 HOH 36 2036 2036 HOH HOH A . D 3 HOH 37 2037 2037 HOH HOH A . D 3 HOH 38 2038 2038 HOH HOH A . D 3 HOH 39 2039 2039 HOH HOH A . D 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 41 2041 2041 HOH HOH A . D 3 HOH 42 2042 2042 HOH HOH A . D 3 HOH 43 2043 2043 HOH HOH A . D 3 HOH 44 2044 2044 HOH HOH A . D 3 HOH 45 2045 2045 HOH HOH A . D 3 HOH 46 2046 2046 HOH HOH A . D 3 HOH 47 2047 2047 HOH HOH A . D 3 HOH 48 2048 2048 HOH HOH A . D 3 HOH 49 2049 2049 HOH HOH A . D 3 HOH 50 2050 2050 HOH HOH A . D 3 HOH 51 2051 2051 HOH HOH A . D 3 HOH 52 2052 2052 HOH HOH A . D 3 HOH 53 2053 2053 HOH HOH A . D 3 HOH 54 2054 2054 HOH HOH A . D 3 HOH 55 2055 2055 HOH HOH A . D 3 HOH 56 2056 2056 HOH HOH A . D 3 HOH 57 2057 2057 HOH HOH A . D 3 HOH 58 2058 2058 HOH HOH A . D 3 HOH 59 2059 2059 HOH HOH A . D 3 HOH 60 2060 2060 HOH HOH A . D 3 HOH 61 2061 2061 HOH HOH A . D 3 HOH 62 2062 2062 HOH HOH A . D 3 HOH 63 2063 2063 HOH HOH A . D 3 HOH 64 2064 2064 HOH HOH A . D 3 HOH 65 2065 2065 HOH HOH A . D 3 HOH 66 2066 2066 HOH HOH A . D 3 HOH 67 2067 2067 HOH HOH A . D 3 HOH 68 2068 2068 HOH HOH A . D 3 HOH 69 2069 2069 HOH HOH A . D 3 HOH 70 2070 2070 HOH HOH A . D 3 HOH 71 2071 2071 HOH HOH A . D 3 HOH 72 2072 2072 HOH HOH A . D 3 HOH 73 2073 2073 HOH HOH A . D 3 HOH 74 2074 2074 HOH HOH A . D 3 HOH 75 2075 2075 HOH HOH A . D 3 HOH 76 2076 2076 HOH HOH A . D 3 HOH 77 2077 2077 HOH HOH A . D 3 HOH 78 2078 2078 HOH HOH A . D 3 HOH 79 2079 2079 HOH HOH A . D 3 HOH 80 2080 2080 HOH HOH A . D 3 HOH 81 2081 2081 HOH HOH A . D 3 HOH 82 2082 2082 HOH HOH A . D 3 HOH 83 2083 2083 HOH HOH A . D 3 HOH 84 2084 2084 HOH HOH A . D 3 HOH 85 2085 2085 HOH HOH A . E 3 HOH 1 2001 2001 HOH HOH B . E 3 HOH 2 2002 2002 HOH HOH B . E 3 HOH 3 2003 2003 HOH HOH B . E 3 HOH 4 2004 2004 HOH HOH B . E 3 HOH 5 2005 2005 HOH HOH B . E 3 HOH 6 2006 2006 HOH HOH B . E 3 HOH 7 2007 2007 HOH HOH B . E 3 HOH 8 2008 2008 HOH HOH B . E 3 HOH 9 2009 2009 HOH HOH B . E 3 HOH 10 2010 2010 HOH HOH B . E 3 HOH 11 2011 2011 HOH HOH B . E 3 HOH 12 2012 2012 HOH HOH B . E 3 HOH 13 2013 2013 HOH HOH B . E 3 HOH 14 2014 2014 HOH HOH B . E 3 HOH 15 2015 2015 HOH HOH B . E 3 HOH 16 2016 2016 HOH HOH B . E 3 HOH 17 2017 2017 HOH HOH B . E 3 HOH 18 2018 2018 HOH HOH B . E 3 HOH 19 2019 2019 HOH HOH B . E 3 HOH 20 2020 2020 HOH HOH B . E 3 HOH 21 2021 2021 HOH HOH B . E 3 HOH 22 2022 2022 HOH HOH B . E 3 HOH 23 2023 2023 HOH HOH B . E 3 HOH 24 2024 2024 HOH HOH B . E 3 HOH 25 2025 2025 HOH HOH B . E 3 HOH 26 2026 2026 HOH HOH B . E 3 HOH 27 2027 2027 HOH HOH B . E 3 HOH 28 2028 2028 HOH HOH B . E 3 HOH 29 2029 2029 HOH HOH B . E 3 HOH 30 2030 2030 HOH HOH B . E 3 HOH 31 2031 2031 HOH HOH B . E 3 HOH 32 2032 2032 HOH HOH B . E 3 HOH 33 2033 2033 HOH HOH B . E 3 HOH 34 2034 2034 HOH HOH B . E 3 HOH 35 2035 2035 HOH HOH B . E 3 HOH 36 2036 2036 HOH HOH B . E 3 HOH 37 2037 2037 HOH HOH B . E 3 HOH 38 2038 2038 HOH HOH B . E 3 HOH 39 2039 2039 HOH HOH B . E 3 HOH 40 2040 2040 HOH HOH B . E 3 HOH 41 2041 2041 HOH HOH B . E 3 HOH 42 2042 2042 HOH HOH B . E 3 HOH 43 2043 2043 HOH HOH B . E 3 HOH 44 2044 2044 HOH HOH B . E 3 HOH 45 2045 2045 HOH HOH B . E 3 HOH 46 2046 2046 HOH HOH B . E 3 HOH 47 2047 2047 HOH HOH B . E 3 HOH 48 2048 2048 HOH HOH B . E 3 HOH 49 2049 2049 HOH HOH B . E 3 HOH 50 2050 2050 HOH HOH B . E 3 HOH 51 2051 2051 HOH HOH B . E 3 HOH 52 2052 2052 HOH HOH B . E 3 HOH 53 2053 2053 HOH HOH B . E 3 HOH 54 2054 2054 HOH HOH B . E 3 HOH 55 2055 2055 HOH HOH B . E 3 HOH 56 2056 2056 HOH HOH B . E 3 HOH 57 2057 2057 HOH HOH B . E 3 HOH 58 2058 2058 HOH HOH B . E 3 HOH 59 2059 2059 HOH HOH B . E 3 HOH 60 2060 2060 HOH HOH B . E 3 HOH 61 2061 2061 HOH HOH B . E 3 HOH 62 2062 2062 HOH HOH B . E 3 HOH 63 2063 2063 HOH HOH B . E 3 HOH 64 2064 2064 HOH HOH B . E 3 HOH 65 2065 2065 HOH HOH B . E 3 HOH 66 2066 2066 HOH HOH B . E 3 HOH 67 2067 2067 HOH HOH B . E 3 HOH 68 2068 2068 HOH HOH B . E 3 HOH 69 2069 2069 HOH HOH B . E 3 HOH 70 2070 2070 HOH HOH B . E 3 HOH 71 2071 2071 HOH HOH B . E 3 HOH 72 2072 2072 HOH HOH B . E 3 HOH 73 2073 2073 HOH HOH B . E 3 HOH 74 2074 2074 HOH HOH B . E 3 HOH 75 2075 2075 HOH HOH B . E 3 HOH 76 2076 2076 HOH HOH B . E 3 HOH 77 2077 2077 HOH HOH B . E 3 HOH 78 2078 2078 HOH HOH B . E 3 HOH 79 2079 2079 HOH HOH B . E 3 HOH 80 2080 2080 HOH HOH B . E 3 HOH 81 2081 2081 HOH HOH B . E 3 HOH 82 2082 2082 HOH HOH B . E 3 HOH 83 2083 2083 HOH HOH B . E 3 HOH 84 2084 2084 HOH HOH B . E 3 HOH 85 2085 2085 HOH HOH B . E 3 HOH 86 2086 2086 HOH HOH B . E 3 HOH 87 2087 2087 HOH HOH B . E 3 HOH 88 2088 2088 HOH HOH B . E 3 HOH 89 2089 2089 HOH HOH B . E 3 HOH 90 2090 2090 HOH HOH B . E 3 HOH 91 2091 2091 HOH HOH B . E 3 HOH 92 2092 2092 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4100 ? 1 MORE -23.6 ? 1 'SSA (A^2)' 9320 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-07 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2018-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.3 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 79 ? ? -71.98 49.05 2 1 GLU B 135 ? ? -39.46 131.80 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;methyl [(2S)-1-{2-(2-{(3R,4S)-3-benzyl-4-hydroxy-1-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2-oxopyrrolidin-3-yl}ethyl)-2-[4-(pyridin-4-yl)benzyl]hydrazinyl}-3,3-dimethyl-1-oxobutan-2-yl]carbamate ; UX9 3 water HOH #