HEADER RNA BINDING PROTEIN/HYDROLASE 24-OCT-11 4A54 TITLE STRUCTURAL BASIS OF THE DCP1:DCP2 MRNA DECAPPING COMPLEX ACTIVATION BY TITLE 2 EDC3 AND SCD6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EDC3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LSM, RESIDUES 1-94; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN C18E5.11C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MRNA DECAPPING COMPLEX SUBUNIT 2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HLM1, RESIDUES 242-291; COMPND 11 SYNONYM: DCP2; COMPND 12 EC: 3.-.-.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 12 ORGANISM_COMMON: FISSION YEAST; SOURCE 13 ORGANISM_TAXID: 4896; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS RNA BINDING PROTEIN-HYDROLASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR S.A.FROMM,V.TRUFFAULT,J.KAMENZ,J.E.BRAUN,N.A.HOFFMANN,E.IZAURRALDE, AUTHOR 2 R.SPRANGERS REVDAT 2 14-JUN-23 4A54 1 REMARK REVDAT 1 01-FEB-12 4A54 0 JRNL AUTH S.A.FROMM,V.TRUFFAULT,J.KAMENZ,J.E.BRAUN,N.A.HOFFMANN, JRNL AUTH 2 E.IZAURRALDE,R.SPRANGERS JRNL TITL THE STRUCTURAL BASIS OF EDC3- AND SCD6-MEDIATED ACTIVATION JRNL TITL 2 OF THE DCP1:DCP2 MRNA DECAPPING COMPLEX. JRNL REF EMBO J. V. 31 279 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 22085934 JRNL DOI 10.1038/EMBOJ.2011.408 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.3 REMARK 3 AUTHORS : SCHWIETERS CD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049998. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 61 166.03 58.05 REMARK 500 1 LEU A 79 178.97 53.36 REMARK 500 1 LYS A 80 91.47 51.97 REMARK 500 1 LYS A 88 -84.93 55.43 REMARK 500 1 ASN B 247 -54.24 -131.41 REMARK 500 1 ILE B 248 -159.78 38.99 REMARK 500 1 SER B 249 -64.01 -138.47 REMARK 500 1 VAL B 250 -159.46 41.19 REMARK 500 1 ASP B 251 103.88 -161.20 REMARK 500 1 VAL B 252 81.86 -162.22 REMARK 500 1 THR B 268 -66.08 65.28 REMARK 500 1 ALA B 269 177.30 55.43 REMARK 500 1 ASP B 272 47.66 -161.24 REMARK 500 1 LEU B 273 -44.42 -162.06 REMARK 500 2 LYS A 60 -63.10 -93.80 REMARK 500 2 MET A 64 89.30 51.75 REMARK 500 2 LYS A 66 -163.06 53.35 REMARK 500 2 SER A 71 159.55 60.12 REMARK 500 2 TRP A 91 -61.08 -161.80 REMARK 500 2 ASP B 251 -157.84 52.88 REMARK 500 2 VAL B 252 95.36 54.74 REMARK 500 2 ALA B 269 85.58 48.09 REMARK 500 2 LEU B 273 88.25 51.43 REMARK 500 2 ALA B 274 -165.79 49.90 REMARK 500 3 LYS A 60 -63.56 -96.40 REMARK 500 3 MET A 64 86.48 51.81 REMARK 500 3 ASN A 75 168.85 56.08 REMARK 500 3 ASP B 251 -81.96 56.55 REMARK 500 3 VAL B 252 95.99 53.46 REMARK 500 3 ASP B 253 -168.45 -161.56 REMARK 500 3 ALA B 269 86.78 48.53 REMARK 500 3 ASP B 272 31.66 -160.52 REMARK 500 3 THR B 280 -46.21 -152.58 REMARK 500 4 GLU A 62 -46.82 -154.17 REMARK 500 4 ASN A 67 -61.12 -91.09 REMARK 500 4 LYS A 70 31.59 -99.43 REMARK 500 4 TRP A 91 -84.79 55.62 REMARK 500 4 ILE B 248 164.54 58.36 REMARK 500 4 ASP B 251 -86.61 54.72 REMARK 500 4 VAL B 252 -87.07 54.89 REMARK 500 4 ALA B 269 72.49 48.84 REMARK 500 4 GLN B 277 83.04 52.28 REMARK 500 4 VAL B 286 -67.52 -144.00 REMARK 500 5 THR B 243 -61.16 -152.25 REMARK 500 5 LYS B 246 70.58 53.48 REMARK 500 5 ILE B 248 94.60 53.76 REMARK 500 5 VAL B 252 36.45 36.73 REMARK 500 5 THR B 268 31.20 -164.21 REMARK 500 5 LEU B 273 94.22 51.79 REMARK 500 5 ALA B 274 -172.19 50.76 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A6T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S.POMBE MRNA DECAPPING ENZYME DCP2P REMARK 900 RELATED ID: 4A53 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF THE DCP1:DCP2 MRNA DECAPPING COMPLEX ACTIVATION REMARK 900 BY EDC3 AND SCD6 REMARK 900 RELATED ID: 18042 RELATED DB: BMRB DBREF 4A54 A 1 94 UNP O94752 YBSB_SCHPO 1 94 DBREF 4A54 B 242 291 UNP O13828 DCP2_SCHPO 242 291 SEQADV 4A54 MET A -1 UNP O94752 EXPRESSION TAG SEQADV 4A54 GLY A 0 UNP O94752 EXPRESSION TAG SEQADV 4A54 GLY B 240 UNP O13828 EXPRESSION TAG SEQADV 4A54 ALA B 241 UNP O13828 EXPRESSION TAG SEQRES 1 A 96 MET GLY MET SER VAL ALA ASP PHE TYR GLY SER ASN VAL SEQRES 2 A 96 GLU VAL LEU LEU ASN ASN ASP SER LYS ALA ARG GLY VAL SEQRES 3 A 96 ILE THR ASN PHE ASP SER SER ASN SER ILE LEU GLN LEU SEQRES 4 A 96 ARG LEU ALA ASN ASP SER THR LYS SER ILE VAL THR LYS SEQRES 5 A 96 ASP ILE LYS ASP LEU ARG ILE LEU PRO LYS ASN GLU ILE SEQRES 6 A 96 MET PRO LYS ASN GLY THR LYS SER PRO SER THR ASN SER SEQRES 7 A 96 THR LYS LEU LYS SER ALA GLU THR TYR SER SER LYS ASN SEQRES 8 A 96 LYS TRP SER MET ASP SEQRES 1 B 52 GLY ALA THR THR LYS GLU LYS ASN ILE SER VAL ASP VAL SEQRES 2 B 52 ASP ALA ASP ALA SER SER GLN LEU LEU SER LEU LEU LYS SEQRES 3 B 52 SER SER THR ALA PRO SER ASP LEU ALA THR PRO GLN PRO SEQRES 4 B 52 SER THR PHE PRO GLN PRO PRO VAL GLU SER HIS SER SER HELIX 1 1 SER A 2 TYR A 7 5 6 HELIX 2 2 ASP B 253 SER B 266 1 14 SHEET 1 AA 5 SER A 43 VAL A 48 0 SHEET 2 AA 5 ILE A 34 LEU A 39 -1 O LEU A 35 N ILE A 47 SHEET 3 AA 5 LYS A 20 ASP A 29 -1 O VAL A 24 N ARG A 38 SHEET 4 AA 5 ASN A 10 LEU A 15 -1 O VAL A 11 N GLY A 23 SHEET 5 AA 5 ILE A 52 ILE A 57 -1 N LYS A 53 O LEU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1