HEADER ADHESION 28-OCT-11 4A5V TITLE SOLUTION STRUCTURE ENSEMBLE OF THE TWO N-TERMINAL APPLE DOMAINS TITLE 2 (RESIDUES 58-231) OF TOXOPLASMA GONDII MICRONEME PROTEIN 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEMAL PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APPLE DOMAINS 1 AND 2, RESIDUES 58-218; COMPND 5 SYNONYM: MIC4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 383379; SOURCE 4 STRAIN: RH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: ORIGAMI; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC KEYWDS ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.MARCHANT,B.COWPER,Y.LIU,L.LAI,C.PINZAN,J.B.MARQ,N.FRIEDRICH, AUTHOR 2 K.SAWMYNADEN,W.CHAI,R.A.CHILDS,S.SAOUROS,P.SIMPSON,M.C.R.BARREIRA, AUTHOR 3 T.FEIZI,D.SOLDATI-FAVRE,S.MATTHEWS REVDAT 4 14-JUN-23 4A5V 1 REMARK REVDAT 3 23-JUN-21 4A5V 1 REMARK REVDAT 2 23-MAY-12 4A5V 1 JRNL REVDAT 1 04-APR-12 4A5V 0 JRNL AUTH J.MARCHANT,B.COWPER,Y.LIU,L.LAI,C.PINZAN,J.B.MARQ, JRNL AUTH 2 N.FRIEDRICH,K.SAWMYNADEN,L.LIEW,W.CHAI,R.A.CHILDS,S.SAOUROS, JRNL AUTH 3 P.SIMPSON,M.C.ROQUE BARREIRA,T.FEIZI,D.SOLDATI-FAVRE, JRNL AUTH 4 S.MATTHEWS JRNL TITL GALACTOSE RECOGNITION BY THE APICOMPLEXAN PARASITE JRNL TITL 2 TOXOPLASMA GONDII. JRNL REF J.BIOL.CHEM. V. 287 16720 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22399295 JRNL DOI 10.1074/JBC.M111.325928 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290050113. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0; 303.0; 303.0 REMARK 210 PH : 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100; 100; 100 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90 % WATER / 10 % D2O; 100 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCA(CO)NH; HNCACB; HNCO; REMARK 210 HN(CA)CO; (H)CC(CO)NH-TOCSY; H(C) REMARK 210 CH-TOCSY; (H)CCH-TOCSY; C-NOESY- REMARK 210 HSQC; N-NOESY- HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TALOS, ARIA, CNS REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED MIC4 APPLE DOMAINS 1 AND 2 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 96 HZ3 LYS A 134 1.56 REMARK 500 H TYR A 124 O THR A 150 1.57 REMARK 500 O MET A 101 H CYS A 131 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 6 PHE A 85 CE1 PHE A 85 CZ 0.124 REMARK 500 7 PHE A 85 CE1 PHE A 85 CZ 0.120 REMARK 500 10 PHE A 85 CE1 PHE A 85 CZ 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -171.47 61.94 REMARK 500 1 GLU A 3 75.33 60.07 REMARK 500 1 LYS A 6 88.28 21.51 REMARK 500 1 SER A 14 -36.31 70.11 REMARK 500 1 ASN A 16 78.21 50.07 REMARK 500 1 ALA A 21 161.37 176.56 REMARK 500 1 LYS A 64 121.90 59.05 REMARK 500 1 ASP A 66 65.38 -163.12 REMARK 500 1 GLU A 92 -40.29 -136.13 REMARK 500 2 SER A 2 58.68 -158.00 REMARK 500 2 LYS A 6 100.34 -45.86 REMARK 500 2 ASN A 16 77.44 46.76 REMARK 500 2 ALA A 21 155.22 175.70 REMARK 500 2 LYS A 64 116.60 65.47 REMARK 500 2 ASP A 66 72.61 -159.60 REMARK 500 2 GLU A 92 -31.04 -144.06 REMARK 500 2 GLN A 155 -158.34 -85.91 REMARK 500 3 LYS A 6 103.60 -46.96 REMARK 500 3 HIS A 13 70.97 -65.43 REMARK 500 3 SER A 14 46.36 -78.79 REMARK 500 3 ASN A 16 78.34 72.49 REMARK 500 3 ALA A 21 160.93 178.92 REMARK 500 3 LYS A 56 29.38 46.26 REMARK 500 3 LYS A 64 117.94 62.92 REMARK 500 3 GLU A 92 -42.44 -136.52 REMARK 500 3 GLN A 155 -159.21 -73.26 REMARK 500 4 LYS A 6 101.50 -38.08 REMARK 500 4 SER A 14 -46.40 60.51 REMARK 500 4 ASN A 16 72.02 27.50 REMARK 500 4 ALA A 21 163.90 176.22 REMARK 500 4 LYS A 64 118.75 71.71 REMARK 500 4 ASP A 66 75.52 -161.50 REMARK 500 4 GLU A 92 -41.22 -137.05 REMARK 500 4 GLN A 155 -159.81 -82.42 REMARK 500 5 LYS A 6 104.35 -45.66 REMARK 500 5 ASN A 16 81.59 67.77 REMARK 500 5 ALA A 21 154.08 171.15 REMARK 500 5 LYS A 64 119.37 63.76 REMARK 500 5 GLU A 92 -45.61 -135.68 REMARK 500 5 PHE A 141 36.17 -94.13 REMARK 500 6 SER A 2 49.95 -104.17 REMARK 500 6 LYS A 6 107.95 -39.89 REMARK 500 6 ASN A 16 77.14 62.82 REMARK 500 6 ALA A 21 153.84 172.87 REMARK 500 6 LYS A 64 123.51 60.36 REMARK 500 6 ASP A 66 69.28 -155.12 REMARK 500 6 GLU A 92 -42.93 -138.65 REMARK 500 6 GLN A 155 -156.10 -83.45 REMARK 500 7 LYS A 6 100.18 -42.91 REMARK 500 7 ASN A 16 79.77 62.16 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18039 RELATED DB: BMRB DBREF 4A5V A 1 161 UNP Q9XZH7 MIC4_TOXGO 58 218 SEQRES 1 A 161 SER SER GLU PRO ALA LYS LEU ASP LEU SER CYS VAL HIS SEQRES 2 A 161 SER ASP ASN LYS GLY SER ARG ALA PRO THR ILE GLY GLU SEQRES 3 A 161 PRO VAL PRO ASP VAL SER LEU GLU GLN CYS ALA ALA GLN SEQRES 4 A 161 CYS LYS ALA VAL ASP GLY CYS THR HIS PHE THR TYR ASN SEQRES 5 A 161 ASP ASP SER LYS MET CYS HIS VAL LYS GLU GLY LYS PRO SEQRES 6 A 161 ASP LEU TYR ASP LEU THR GLY GLY LYS THR ALA SER ARG SEQRES 7 A 161 SER CYS ASP ARG SER CYS PHE GLU GLN HIS VAL SER TYR SEQRES 8 A 161 GLU GLY ALA PRO ASP VAL MET THR ALA MET VAL THR SER SEQRES 9 A 161 GLN SER ALA ASP CYS GLN ALA ALA CYS ALA ALA ASP PRO SEQRES 10 A 161 SER CYS GLU ILE PHE THR TYR ASN GLU HIS ASP GLN LYS SEQRES 11 A 161 CYS THR PHE LYS GLY ARG GLY PHE SER ALA PHE LYS GLU SEQRES 12 A 161 ARG GLY VAL LEU GLY VAL THR SER GLY PRO LYS GLN PHE SEQRES 13 A 161 CYS ASP GLU GLY GLY HELIX 1 1 SER A 32 VAL A 43 1 12 HELIX 2 2 GLN A 105 ASP A 116 1 12 SHEET 1 AA 2 LYS A 17 SER A 19 0 SHEET 2 AA 2 LEU A 67 ASP A 69 -1 O TYR A 68 N GLY A 18 SHEET 1 AB 3 CYS A 58 LYS A 61 0 SHEET 2 AB 3 HIS A 48 ASN A 52 -1 O HIS A 48 N LYS A 61 SHEET 3 AB 3 GLY A 73 SER A 77 -1 O LYS A 74 N TYR A 51 SHEET 1 AC 4 GLU A 86 GLN A 87 0 SHEET 2 AC 4 VAL A 149 GLY A 152 -1 O SER A 151 N GLU A 86 SHEET 3 AC 4 ILE A 121 ASN A 125 -1 O PHE A 122 N GLY A 152 SHEET 4 AC 4 LYS A 130 LYS A 134 -1 O LYS A 130 N ASN A 125 SHEET 1 AD 2 VAL A 89 TYR A 91 0 SHEET 2 AD 2 LYS A 142 ARG A 144 -1 O GLU A 143 N SER A 90 SSBOND 1 CYS A 11 CYS A 80 1555 1555 2.03 SSBOND 2 CYS A 36 CYS A 58 1555 1555 2.02 SSBOND 3 CYS A 40 CYS A 46 1555 1555 2.03 SSBOND 4 CYS A 84 CYS A 157 1555 1555 2.03 SSBOND 5 CYS A 109 CYS A 131 1555 1555 2.03 SSBOND 6 CYS A 113 CYS A 119 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1