data_4A5X # _entry.id 4A5X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A5X PDBE EBI-50129 WWPDB D_1290050129 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A5X _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-10-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hadders, M.A.' 1 'Agromayor, M.' 2 'Caballe, A.' 3 'Obita, T.' 4 'Perisic, O.' 5 'Williams, R.L.' 6 'Martin-Serrano, J.' 7 # _citation.id primary _citation.title 'Escrt-III Binding Protein Mitd1 is Involved in Cytokinesis and Has an Unanticipated Pld Fold that Binds Membranes.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 17424 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23045692 _citation.pdbx_database_id_DOI 10.1073/PNAS.1206839109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hadders, M.A.' 1 primary 'Agromayor, M.' 2 primary 'Obita, T.' 3 primary 'Perisic, O.' 4 primary 'Caballe, A.' 5 primary 'Kloc, M.' 6 primary 'Lamers, M.H.' 7 primary 'Williams, R.L.' 8 primary 'Martin-Serrano, J.' 9 # _cell.entry_id 4A5X _cell.length_a 67.070 _cell.length_b 74.160 _cell.length_c 89.785 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A5X _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MIT DOMAIN-CONTAINING PROTEIN 1' 10053.435 2 ? ? 'MIT, RESIDUES 9-85' ? 2 polymer man 'CHARGED MULTIVESICULAR BODY PROTEIN 1A' 1901.157 2 ? ? 'RESIDUES 184-196' ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL 296.357 1 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 MITD1 2 'CHROMATIN-MODIFYING PROTEIN 1A, CHMP1A, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 46-1, VPS46-1, HVPS46-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAHHHHHHMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYL DQEKED ; ;MAHHHHHHMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYL DQEKED ; A,B ? 2 'polypeptide(L)' no no SHMEDQLSRRLAALRN SHMEDQLSRRLAALRN C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 ASP n 1 11 PRO n 1 12 GLN n 1 13 SER n 1 14 THR n 1 15 ALA n 1 16 ALA n 1 17 ALA n 1 18 THR n 1 19 VAL n 1 20 LEU n 1 21 LYS n 1 22 ARG n 1 23 ALA n 1 24 VAL n 1 25 GLU n 1 26 LEU n 1 27 ASP n 1 28 SER n 1 29 GLU n 1 30 SER n 1 31 ARG n 1 32 TYR n 1 33 PRO n 1 34 GLN n 1 35 ALA n 1 36 LEU n 1 37 VAL n 1 38 CYS n 1 39 TYR n 1 40 GLN n 1 41 GLU n 1 42 GLY n 1 43 ILE n 1 44 ASP n 1 45 LEU n 1 46 LEU n 1 47 LEU n 1 48 GLN n 1 49 VAL n 1 50 LEU n 1 51 LYS n 1 52 GLY n 1 53 THR n 1 54 LYS n 1 55 ASP n 1 56 ASN n 1 57 THR n 1 58 LYS n 1 59 ARG n 1 60 CYS n 1 61 ASN n 1 62 LEU n 1 63 ARG n 1 64 GLU n 1 65 LYS n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 TYR n 1 70 MET n 1 71 ASP n 1 72 ARG n 1 73 ALA n 1 74 GLU n 1 75 ASN n 1 76 ILE n 1 77 LYS n 1 78 LYS n 1 79 TYR n 1 80 LEU n 1 81 ASP n 1 82 GLN n 1 83 GLU n 1 84 LYS n 1 85 GLU n 1 86 ASP n 2 1 SER n 2 2 HIS n 2 3 MET n 2 4 GLU n 2 5 ASP n 2 6 GLN n 2 7 LEU n 2 8 SER n 2 9 ARG n 2 10 ARG n 2 11 LEU n 2 12 ALA n 2 13 ALA n 2 14 LEU n 2 15 ARG n 2 16 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 C41 ? ? ? ? ? ? PLASMID POPTH ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 511693 ? ? ? ? ? ? BL21 C41 ? ? ? ? ? ? PLASMID POPTH ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP MITD1_HUMAN 1 ? ? Q8WV92 ? 2 UNP CHM1A_HUMAN 2 ? ? Q9HD42 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4A5X A 10 ? 86 ? Q8WV92 9 ? 85 ? 9 85 2 1 4A5X B 10 ? 86 ? Q8WV92 9 ? 85 ? 9 85 3 2 4A5X C 4 ? 16 ? Q9HD42 184 ? 196 ? 184 196 4 2 4A5X D 4 ? 16 ? Q9HD42 184 ? 196 ? 184 196 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A5X MET A 1 ? UNP Q8WV92 ? ? 'expression tag' 0 1 1 4A5X ALA A 2 ? UNP Q8WV92 ? ? 'expression tag' 1 2 1 4A5X HIS A 3 ? UNP Q8WV92 ? ? 'expression tag' 2 3 1 4A5X HIS A 4 ? UNP Q8WV92 ? ? 'expression tag' 3 4 1 4A5X HIS A 5 ? UNP Q8WV92 ? ? 'expression tag' 4 5 1 4A5X HIS A 6 ? UNP Q8WV92 ? ? 'expression tag' 5 6 1 4A5X HIS A 7 ? UNP Q8WV92 ? ? 'expression tag' 6 7 1 4A5X HIS A 8 ? UNP Q8WV92 ? ? 'expression tag' 7 8 1 4A5X MET A 9 ? UNP Q8WV92 ? ? 'expression tag' 8 9 2 4A5X MET B 1 ? UNP Q8WV92 ? ? 'expression tag' 0 10 2 4A5X ALA B 2 ? UNP Q8WV92 ? ? 'expression tag' 1 11 2 4A5X HIS B 3 ? UNP Q8WV92 ? ? 'expression tag' 2 12 2 4A5X HIS B 4 ? UNP Q8WV92 ? ? 'expression tag' 3 13 2 4A5X HIS B 5 ? UNP Q8WV92 ? ? 'expression tag' 4 14 2 4A5X HIS B 6 ? UNP Q8WV92 ? ? 'expression tag' 5 15 2 4A5X HIS B 7 ? UNP Q8WV92 ? ? 'expression tag' 6 16 2 4A5X HIS B 8 ? UNP Q8WV92 ? ? 'expression tag' 7 17 2 4A5X MET B 9 ? UNP Q8WV92 ? ? 'expression tag' 8 18 3 4A5X SER C 1 ? UNP Q9HD42 ? ? 'expression tag' 181 19 3 4A5X HIS C 2 ? UNP Q9HD42 ? ? 'expression tag' 182 20 3 4A5X MET C 3 ? UNP Q9HD42 ? ? 'expression tag' 183 21 4 4A5X SER D 1 ? UNP Q9HD42 ? ? 'expression tag' 181 22 4 4A5X HIS D 2 ? UNP Q9HD42 ? ? 'expression tag' 182 23 4 4A5X MET D 3 ? UNP Q9HD42 ? ? 'expression tag' 183 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P15 non-polymer . 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL ? 'C13 H28 O7' 296.357 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A5X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '29% PEG2000MME, 160 MM KSCN' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-09-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97630 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.97630 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A5X _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 1.91 _reflns.number_obs 17144 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.50 _reflns.B_iso_Wilson_estimate 31.13 _reflns.pdbx_redundancy 7.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.91 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.62 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.20 _reflns_shell.pdbx_redundancy 7.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A5X _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17144 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.34 _refine.ls_d_res_high 1.91 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2024 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_factor_R_free 0.2265 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 875 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9364 _refine.correlation_coeff_Fo_to_Fc_free 0.9288 _refine.B_iso_mean 38.60 _refine.aniso_B[1][1] 4.6019 _refine.aniso_B[2][2] -6.0606 _refine.aniso_B[3][3] 1.4586 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1WFD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4A5X _refine_analyze.Luzzati_coordinate_error_obs 0.274 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1419 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1526 _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 18.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.008 ? 2.00 1467 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.90 ? 2.00 1954 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 567 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 48 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 201 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1448 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.16 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 16.29 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 188 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1729 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.d_res_high 1.91 _refine_ls_shell.d_res_low 2.03 _refine_ls_shell.number_reflns_R_work 2444 _refine_ls_shell.R_factor_R_work 0.2130 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2480 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.16 _refine_ls_shell.number_reflns_R_free 133 _refine_ls_shell.number_reflns_all 2577 _refine_ls_shell.R_factor_all 0.2149 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.025990 0.975080 0.220330 0.987540 -0.059260 0.145750 0.155180 0.213800 -0.964470 -32.42354 30.12221 17.40723 2 given ? 0.066550 0.951980 0.298850 0.981750 -0.115950 0.150740 0.178150 0.283370 -0.942320 -32.04975 31.69856 15.42861 # _struct.entry_id 4A5X _struct.title 'Structures of MITD1' _struct.pdbx_descriptor 'MIT DOMAIN-CONTAINING PROTEIN 1, CHARGED MULTIVESICULAR BODY PROTEIN 1A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A5X _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'PROTEIN TRANSPORT, ESCRT, CYTOKINESIS, MIDBODY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 11 ? GLU A 29 ? PRO A 10 GLU A 28 1 ? 19 HELX_P HELX_P2 2 ARG A 31 ? GLY A 52 ? ARG A 30 GLY A 51 1 ? 22 HELX_P HELX_P3 3 ASP A 55 ? GLU A 83 ? ASP A 54 GLU A 82 1 ? 29 HELX_P HELX_P4 4 ASP B 10 ? GLU B 29 ? ASP B 9 GLU B 28 1 ? 20 HELX_P HELX_P5 5 ARG B 31 ? GLY B 52 ? ARG B 30 GLY B 51 1 ? 22 HELX_P HELX_P6 6 ASP B 55 ? GLN B 82 ? ASP B 54 GLN B 81 1 ? 28 HELX_P HELX_P7 7 MET C 3 ? ASN C 16 ? MET C 183 ASN C 196 1 ? 14 HELX_P HELX_P8 8 MET D 3 ? ASN D 16 ? MET D 183 ASN D 196 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL A 1083' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE P15 B 1082' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL C 1197' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LYS A 68 ? LYS A 67 . ? 1_555 ? 2 AC1 2 TYR A 69 ? TYR A 68 . ? 1_555 ? 3 AC2 10 ASP B 27 ? ASP B 26 . ? 1_555 ? 4 AC2 10 SER B 28 ? SER B 27 . ? 1_555 ? 5 AC2 10 TYR B 32 ? TYR B 31 . ? 1_555 ? 6 AC2 10 TYR B 39 ? TYR B 38 . ? 3_555 ? 7 AC2 10 LYS B 68 ? LYS B 67 . ? 3_555 ? 8 AC2 10 ARG B 72 ? ARG B 71 . ? 3_555 ? 9 AC2 10 ARG B 72 ? ARG B 71 . ? 1_555 ? 10 AC2 10 ASN B 75 ? ASN B 74 . ? 1_555 ? 11 AC2 10 TYR B 79 ? TYR B 78 . ? 1_555 ? 12 AC2 10 HOH I . ? HOH B 2015 . ? 1_555 ? 13 AC3 6 ARG A 59 ? ARG A 58 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 2016 . ? 1_555 ? 15 AC3 6 TYR B 79 ? TYR B 78 . ? 7_455 ? 16 AC3 6 MET C 3 ? MET C 183 . ? 1_555 ? 17 AC3 6 GLU C 4 ? GLU C 184 . ? 1_555 ? 18 AC3 6 ASP C 5 ? ASP C 185 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A5X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A5X _atom_sites.fract_transf_matrix[1][1] 0.014910 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011138 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 ALA 2 1 ? ? ? A . n A 1 3 HIS 3 2 ? ? ? A . n A 1 4 HIS 4 3 ? ? ? A . n A 1 5 HIS 5 4 ? ? ? A . n A 1 6 HIS 6 5 ? ? ? A . n A 1 7 HIS 7 6 ? ? ? A . n A 1 8 HIS 8 7 ? ? ? A . n A 1 9 MET 9 8 ? ? ? A . n A 1 10 ASP 10 9 ? ? ? A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 CYS 38 37 37 CYS CYS A . n A 1 39 TYR 39 38 38 TYR TYR A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 CYS 60 59 59 CYS CYS A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ARG 63 62 62 ARG ARG A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 TYR 69 68 68 TYR TYR A . n A 1 70 MET 70 69 69 MET MET A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 ASN 75 74 74 ASN ASN A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 LYS 77 76 76 LYS LYS A . n A 1 78 LYS 78 77 77 LYS LYS A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 LYS 84 83 ? ? ? A . n A 1 85 GLU 85 84 ? ? ? A . n A 1 86 ASP 86 85 ? ? ? A . n B 1 1 MET 1 0 ? ? ? B . n B 1 2 ALA 2 1 ? ? ? B . n B 1 3 HIS 3 2 ? ? ? B . n B 1 4 HIS 4 3 ? ? ? B . n B 1 5 HIS 5 4 ? ? ? B . n B 1 6 HIS 6 5 ? ? ? B . n B 1 7 HIS 7 6 ? ? ? B . n B 1 8 HIS 8 7 ? ? ? B . n B 1 9 MET 9 8 ? ? ? B . n B 1 10 ASP 10 9 9 ASP ASP B . n B 1 11 PRO 11 10 10 PRO PRO B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 SER 13 12 12 SER SER B . n B 1 14 THR 14 13 13 THR THR B . n B 1 15 ALA 15 14 14 ALA ALA B . n B 1 16 ALA 16 15 15 ALA ALA B . n B 1 17 ALA 17 16 16 ALA ALA B . n B 1 18 THR 18 17 17 THR THR B . n B 1 19 VAL 19 18 18 VAL VAL B . n B 1 20 LEU 20 19 19 LEU LEU B . n B 1 21 LYS 21 20 20 LYS LYS B . n B 1 22 ARG 22 21 21 ARG ARG B . n B 1 23 ALA 23 22 22 ALA ALA B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 GLU 25 24 24 GLU GLU B . n B 1 26 LEU 26 25 25 LEU LEU B . n B 1 27 ASP 27 26 26 ASP ASP B . n B 1 28 SER 28 27 27 SER SER B . n B 1 29 GLU 29 28 28 GLU GLU B . n B 1 30 SER 30 29 29 SER SER B . n B 1 31 ARG 31 30 30 ARG ARG B . n B 1 32 TYR 32 31 31 TYR TYR B . n B 1 33 PRO 33 32 32 PRO PRO B . n B 1 34 GLN 34 33 33 GLN GLN B . n B 1 35 ALA 35 34 34 ALA ALA B . n B 1 36 LEU 36 35 35 LEU LEU B . n B 1 37 VAL 37 36 36 VAL VAL B . n B 1 38 CYS 38 37 37 CYS CYS B . n B 1 39 TYR 39 38 38 TYR TYR B . n B 1 40 GLN 40 39 39 GLN GLN B . n B 1 41 GLU 41 40 40 GLU GLU B . n B 1 42 GLY 42 41 41 GLY GLY B . n B 1 43 ILE 43 42 42 ILE ILE B . n B 1 44 ASP 44 43 43 ASP ASP B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 LEU 46 45 45 LEU LEU B . n B 1 47 LEU 47 46 46 LEU LEU B . n B 1 48 GLN 48 47 47 GLN GLN B . n B 1 49 VAL 49 48 48 VAL VAL B . n B 1 50 LEU 50 49 49 LEU LEU B . n B 1 51 LYS 51 50 50 LYS LYS B . n B 1 52 GLY 52 51 51 GLY GLY B . n B 1 53 THR 53 52 52 THR THR B . n B 1 54 LYS 54 53 53 LYS LYS B . n B 1 55 ASP 55 54 54 ASP ASP B . n B 1 56 ASN 56 55 55 ASN ASN B . n B 1 57 THR 57 56 56 THR THR B . n B 1 58 LYS 58 57 57 LYS LYS B . n B 1 59 ARG 59 58 58 ARG ARG B . n B 1 60 CYS 60 59 59 CYS CYS B . n B 1 61 ASN 61 60 60 ASN ASN B . n B 1 62 LEU 62 61 61 LEU LEU B . n B 1 63 ARG 63 62 62 ARG ARG B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 LYS 65 64 64 LYS LYS B . n B 1 66 ILE 66 65 65 ILE ILE B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 LYS 68 67 67 LYS LYS B . n B 1 69 TYR 69 68 68 TYR TYR B . n B 1 70 MET 70 69 69 MET MET B . n B 1 71 ASP 71 70 70 ASP ASP B . n B 1 72 ARG 72 71 71 ARG ARG B . n B 1 73 ALA 73 72 72 ALA ALA B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 ASN 75 74 74 ASN ASN B . n B 1 76 ILE 76 75 75 ILE ILE B . n B 1 77 LYS 77 76 76 LYS LYS B . n B 1 78 LYS 78 77 77 LYS LYS B . n B 1 79 TYR 79 78 78 TYR TYR B . n B 1 80 LEU 80 79 79 LEU LEU B . n B 1 81 ASP 81 80 80 ASP ASP B . n B 1 82 GLN 82 81 81 GLN GLN B . n B 1 83 GLU 83 82 ? ? ? B . n B 1 84 LYS 84 83 ? ? ? B . n B 1 85 GLU 85 84 ? ? ? B . n B 1 86 ASP 86 85 ? ? ? B . n C 2 1 SER 1 181 ? ? ? C . n C 2 2 HIS 2 182 ? ? ? C . n C 2 3 MET 3 183 183 MET MET C . n C 2 4 GLU 4 184 184 GLU GLU C . n C 2 5 ASP 5 185 185 ASP ASP C . n C 2 6 GLN 6 186 186 GLN GLN C . n C 2 7 LEU 7 187 187 LEU LEU C . n C 2 8 SER 8 188 188 SER SER C . n C 2 9 ARG 9 189 189 ARG ARG C . n C 2 10 ARG 10 190 190 ARG ARG C . n C 2 11 LEU 11 191 191 LEU LEU C . n C 2 12 ALA 12 192 192 ALA ALA C . n C 2 13 ALA 13 193 193 ALA ALA C . n C 2 14 LEU 14 194 194 LEU LEU C . n C 2 15 ARG 15 195 195 ARG ARG C . n C 2 16 ASN 16 196 196 ASN ASN C . n D 2 1 SER 1 181 181 SER SER D . n D 2 2 HIS 2 182 182 HIS HIS D . n D 2 3 MET 3 183 183 MET MET D . n D 2 4 GLU 4 184 184 GLU GLU D . n D 2 5 ASP 5 185 185 ASP ASP D . n D 2 6 GLN 6 186 186 GLN GLN D . n D 2 7 LEU 7 187 187 LEU LEU D . n D 2 8 SER 8 188 188 SER SER D . n D 2 9 ARG 9 189 189 ARG ARG D . n D 2 10 ARG 10 190 190 ARG ARG D . n D 2 11 LEU 11 191 191 LEU LEU D . n D 2 12 ALA 12 192 192 ALA ALA D . n D 2 13 ALA 13 193 193 ALA ALA D . n D 2 14 LEU 14 194 194 LEU LEU D . n D 2 15 ARG 15 195 195 ARG ARG D . n D 2 16 ASN 16 196 196 ASN ASN D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 1083 1083 GOL GOL A . F 4 P15 1 1082 1082 P15 P15 B . G 3 GOL 1 1197 1197 GOL GOL C . H 5 HOH 1 2001 2001 HOH HOH A . H 5 HOH 2 2002 2002 HOH HOH A . H 5 HOH 3 2003 2003 HOH HOH A . H 5 HOH 4 2004 2004 HOH HOH A . H 5 HOH 5 2005 2005 HOH HOH A . H 5 HOH 6 2006 2006 HOH HOH A . H 5 HOH 7 2007 2007 HOH HOH A . H 5 HOH 8 2008 2008 HOH HOH A . H 5 HOH 9 2009 2009 HOH HOH A . H 5 HOH 10 2010 2010 HOH HOH A . H 5 HOH 11 2011 2011 HOH HOH A . H 5 HOH 12 2012 2012 HOH HOH A . H 5 HOH 13 2013 2013 HOH HOH A . H 5 HOH 14 2014 2014 HOH HOH A . H 5 HOH 15 2015 2015 HOH HOH A . H 5 HOH 16 2016 2016 HOH HOH A . H 5 HOH 17 2017 2017 HOH HOH A . H 5 HOH 18 2018 2018 HOH HOH A . H 5 HOH 19 2019 2019 HOH HOH A . H 5 HOH 20 2020 2020 HOH HOH A . H 5 HOH 21 2021 2021 HOH HOH A . H 5 HOH 22 2022 2022 HOH HOH A . H 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 1 2001 2001 HOH HOH B . I 5 HOH 2 2002 2002 HOH HOH B . I 5 HOH 3 2003 2003 HOH HOH B . I 5 HOH 4 2004 2004 HOH HOH B . I 5 HOH 5 2005 2005 HOH HOH B . I 5 HOH 6 2006 2006 HOH HOH B . I 5 HOH 7 2007 2007 HOH HOH B . I 5 HOH 8 2008 2008 HOH HOH B . I 5 HOH 9 2009 2009 HOH HOH B . I 5 HOH 10 2010 2010 HOH HOH B . I 5 HOH 11 2011 2011 HOH HOH B . I 5 HOH 12 2012 2012 HOH HOH B . I 5 HOH 13 2013 2013 HOH HOH B . I 5 HOH 14 2014 2014 HOH HOH B . I 5 HOH 15 2015 2015 HOH HOH B . I 5 HOH 16 2016 2016 HOH HOH B . I 5 HOH 17 2017 2017 HOH HOH B . I 5 HOH 18 2018 2018 HOH HOH B . I 5 HOH 19 2019 2019 HOH HOH B . I 5 HOH 20 2020 2020 HOH HOH B . I 5 HOH 21 2021 2021 HOH HOH B . I 5 HOH 22 2022 2022 HOH HOH B . I 5 HOH 23 2023 2023 HOH HOH B . I 5 HOH 24 2024 2024 HOH HOH B . I 5 HOH 25 2025 2025 HOH HOH B . I 5 HOH 26 2026 2026 HOH HOH B . I 5 HOH 27 2027 2027 HOH HOH B . I 5 HOH 28 2028 2028 HOH HOH B . I 5 HOH 29 2029 2029 HOH HOH B . I 5 HOH 30 2030 2030 HOH HOH B . I 5 HOH 31 2031 2031 HOH HOH B . I 5 HOH 32 2032 2032 HOH HOH B . I 5 HOH 33 2033 2033 HOH HOH B . I 5 HOH 34 2034 2034 HOH HOH B . I 5 HOH 35 2035 2035 HOH HOH B . I 5 HOH 36 2036 2036 HOH HOH B . I 5 HOH 37 2037 2037 HOH HOH B . I 5 HOH 38 2038 2038 HOH HOH B . I 5 HOH 39 2039 2039 HOH HOH B . I 5 HOH 40 2040 2040 HOH HOH B . I 5 HOH 41 2041 2041 HOH HOH B . I 5 HOH 42 2042 2042 HOH HOH B . I 5 HOH 43 2043 2043 HOH HOH B . J 5 HOH 1 2001 2001 HOH HOH C . J 5 HOH 2 2002 2002 HOH HOH C . J 5 HOH 3 2003 2003 HOH HOH C . J 5 HOH 4 2004 2004 HOH HOH C . K 5 HOH 1 2001 2001 HOH HOH D . K 5 HOH 2 2002 2002 HOH HOH D . K 5 HOH 3 2003 2003 HOH HOH D . K 5 HOH 4 2004 2004 HOH HOH D . K 5 HOH 5 2005 2005 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G,H,J 2 1 B,D,F,I,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1750 ? 1 MORE -6.9 ? 1 'SSA (A^2)' 5580 ? 2 'ABSA (A^2)' 1330 ? 2 MORE -3.3 ? 2 'SSA (A^2)' 5730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-14 2 'Structure model' 1 1 2013-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -6.4509 29.1113 5.0379 -0.0265 -0.0349 -0.0609 0.0379 0.0129 0.0875 6.7086 8.0756 2.0063 -2.0756 -0.4155 1.3533 0.0725 0.5653 0.5749 -0.5271 0.0421 -0.4898 -0.1413 0.1602 -0.1146 'X-RAY DIFFRACTION' 2 ? refined -10.9337 36.9272 13.8162 -0.0690 -0.0596 0.0232 0.0782 -0.0591 0.0126 3.7311 4.6734 1.7043 -0.5849 1.0158 -0.8948 -0.1577 -0.0256 0.6291 0.3408 0.1240 -0.2355 -0.1819 -0.2040 0.0337 'X-RAY DIFFRACTION' 3 ? refined -21.3753 27.9361 6.9366 -0.1378 0.0325 -0.0116 0.0356 -0.0591 0.0247 1.9463 8.3632 3.7569 1.2130 2.2849 -0.7007 -0.0141 -0.1069 0.2567 -0.3595 0.1429 0.7155 0.1130 -0.7862 -0.1288 'X-RAY DIFFRACTION' 4 ? refined -1.5444 23.5899 17.1845 -0.0954 -0.1187 -0.1214 0.0223 -0.0213 -0.0218 4.4750 4.5503 5.5594 -0.4203 -2.6149 -1.0673 0.0641 -0.0839 0.4315 -0.0604 0.0209 -0.1321 -0.2155 0.0646 -0.0849 'X-RAY DIFFRACTION' 5 ? refined 5.2275 17.8533 11.4759 -0.0005 -0.0160 -0.0556 0.0368 0.0224 0.0182 5.6643 2.0145 2.5334 0.3172 -2.0479 -0.3623 -0.0224 -0.0015 0.1100 -0.1980 -0.0723 -0.2297 0.1033 0.1947 0.0947 'X-RAY DIFFRACTION' 6 ? refined -7.8397 6.2981 11.8957 0.0708 0.0142 0.1214 -0.0386 0.0136 -0.0564 2.2888 8.2547 5.1206 0.9339 -0.0719 -2.2592 -0.1070 0.0572 -0.9802 -0.3822 -0.0232 0.3511 0.3773 -0.2086 0.1302 'X-RAY DIFFRACTION' 7 ? refined -18.2605 39.8901 20.6593 -0.0518 0.0563 0.0413 0.1920 0.0922 -0.0433 0.0020 0.6942 0.8400 0.4963 2.0276 0.4403 -0.0326 -0.1030 0.2688 -0.0036 -0.1047 0.0240 -0.0037 -0.0535 0.1373 'X-RAY DIFFRACTION' 8 ? refined -19.3968 29.6056 18.2445 -0.0786 0.0190 0.0155 0.0973 0.0359 0.0173 6.1051 0.0020 0.0000 -0.8682 -0.1627 3.4466 -0.0196 -0.2582 -0.1368 0.6345 -0.0107 0.6651 -0.2236 -0.6681 0.0303 'X-RAY DIFFRACTION' 9 ? refined 11.1143 10.8463 5.3689 0.0711 -0.0012 0.0073 0.0587 0.1125 0.0333 8.2302 0.0000 1.4996 -5.2019 0.4825 2.1875 -0.1008 0.2728 -0.1690 -0.0402 -0.0939 -0.4997 0.3096 0.3942 0.1947 'X-RAY DIFFRACTION' 10 ? refined 0.1585 12.0142 3.1974 -0.0126 -0.0254 -0.0703 0.0152 0.0043 -0.0602 1.2370 3.8540 7.7414 1.7420 -1.0253 5.3734 -0.1616 0.6315 -0.3788 -0.6457 -0.1418 0.0705 0.2288 -0.2511 0.3034 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESSEQ 10:30' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESSEQ 31:65' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESSEQ 66:82' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN B AND RESSEQ 9:29' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? 'CHAIN B AND RESSEQ 30:72' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? 'CHAIN B AND RESSEQ 73:81)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? 'CHAIN C AND RESSEQ 183:187' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? 'CHAIN C AND RESSEQ 188:196' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? 'CHAIN D AND RESSEQ 181:187' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? 'CHAIN D AND RESSEQ 188:196' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.8.0 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 30 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -102.13 _pdbx_validate_torsion.psi 72.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ALA 1 ? A ALA 2 3 1 Y 1 A HIS 2 ? A HIS 3 4 1 Y 1 A HIS 3 ? A HIS 4 5 1 Y 1 A HIS 4 ? A HIS 5 6 1 Y 1 A HIS 5 ? A HIS 6 7 1 Y 1 A HIS 6 ? A HIS 7 8 1 Y 1 A HIS 7 ? A HIS 8 9 1 Y 1 A MET 8 ? A MET 9 10 1 Y 1 A ASP 9 ? A ASP 10 11 1 Y 1 A LYS 83 ? A LYS 84 12 1 Y 1 A GLU 84 ? A GLU 85 13 1 Y 1 A ASP 85 ? A ASP 86 14 1 Y 1 B MET 0 ? B MET 1 15 1 Y 1 B ALA 1 ? B ALA 2 16 1 Y 1 B HIS 2 ? B HIS 3 17 1 Y 1 B HIS 3 ? B HIS 4 18 1 Y 1 B HIS 4 ? B HIS 5 19 1 Y 1 B HIS 5 ? B HIS 6 20 1 Y 1 B HIS 6 ? B HIS 7 21 1 Y 1 B HIS 7 ? B HIS 8 22 1 Y 1 B MET 8 ? B MET 9 23 1 Y 1 B GLU 82 ? B GLU 83 24 1 Y 1 B LYS 83 ? B LYS 84 25 1 Y 1 B GLU 84 ? B GLU 85 26 1 Y 1 B ASP 85 ? B ASP 86 27 1 Y 1 C SER 181 ? C SER 1 28 1 Y 1 C HIS 182 ? C HIS 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL P15 5 water HOH #