HEADER TRANSPORT PROTEIN 31-OCT-11 4A62 TITLE PARM FROM R1 PLASMID IN COMPLEX WITH PEPTIDE FROM C-TERMINUS OF PARR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID SEGREGATION PROTEIN PARM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PARM FROM PLASMID R1, PARA LOCUS 36 KDA PROTEIN, PROTEIN COMPND 5 STBA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN STBB; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: C-TERMINAL HELIX, RESIDUES 101-117; COMPND 12 SYNONYM: PARR FROM PLASMID R1; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: RESIDUES 101 TO 117 OF PARR EQKSDEETKKNAMKLIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS17; SOURCE 9 OTHER_DETAILS: PLASMID PROTEIN FROM R1 PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 OTHER_DETAILS: PLASMID PROTEIN FROM R1 PLASMID KEYWDS TRANSPORT PROTEIN, PLASMID SEGREGATION EXPDTA X-RAY DIFFRACTION AUTHOR P.GAYATHRI,J.LOWE REVDAT 4 20-DEC-23 4A62 1 REMARK LINK REVDAT 3 24-JAN-18 4A62 1 SOURCE REVDAT 2 19-DEC-12 4A62 1 JRNL REVDAT 1 07-NOV-12 4A62 0 JRNL AUTH P.GAYATHRI,T.FUJII,J.MOLLER-JENSEN,F.VAN DEN ENT,K.NAMBA, JRNL AUTH 2 J.LOWE JRNL TITL A BIPOLAR SPINDLE OF ANTIPARALLEL PARM FILAMENTS DRIVES JRNL TITL 2 BACTERIAL PLASMID SEGREGATION. JRNL REF SCIENCE V. 338 1334 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 23112295 JRNL DOI 10.1126/SCIENCE.1229091 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6190 - 5.1666 1.00 2762 143 0.1793 0.2222 REMARK 3 2 5.1666 - 4.1035 1.00 2661 146 0.1543 0.1995 REMARK 3 3 4.1035 - 3.5855 1.00 2672 133 0.1748 0.2430 REMARK 3 4 3.5855 - 3.2580 1.00 2629 150 0.2066 0.2814 REMARK 3 5 3.2580 - 3.0247 1.00 2628 158 0.2299 0.3048 REMARK 3 6 3.0247 - 2.8465 1.00 2634 128 0.2312 0.3308 REMARK 3 7 2.8465 - 2.7040 1.00 2631 140 0.2143 0.2808 REMARK 3 8 2.7040 - 2.5863 1.00 2631 145 0.2334 0.2975 REMARK 3 9 2.5863 - 2.4868 1.00 2598 128 0.2167 0.3124 REMARK 3 10 2.4868 - 2.4010 1.00 2647 127 0.2221 0.2844 REMARK 3 11 2.4010 - 2.3259 1.00 2596 141 0.2373 0.3189 REMARK 3 12 2.3259 - 2.2595 1.00 2635 130 0.2515 0.3623 REMARK 3 13 2.2595 - 2.2000 1.00 2630 141 0.2625 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 50.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25460 REMARK 3 B22 (A**2) : 2.25460 REMARK 3 B33 (A**2) : -4.50920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5358 REMARK 3 ANGLE : 1.016 7273 REMARK 3 CHIRALITY : 0.055 841 REMARK 3 PLANARITY : 0.003 929 REMARK 3 DIHEDRAL : 13.890 1981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS ADDED IN RIDING POSITIONS REMARK 3 DURING REFINEMENT. REMARK 4 REMARK 4 4A62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290050145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 34.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MWM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 5.0, 2.4 M REMARK 280 AMMONIUM SULPHATE, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.39194 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.10667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.42500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.39194 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.10667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.42500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.39194 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.10667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.42500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.39194 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.10667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.42500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.39194 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.10667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.42500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.39194 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.10667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.78389 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 114.21333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 84.78389 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 114.21333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 84.78389 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 114.21333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 84.78389 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 114.21333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 84.78389 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 114.21333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 84.78389 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 114.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2075 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 163 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 163 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 101 REMARK 465 GLN C 102 REMARK 465 LYS C 103 REMARK 465 SER C 104 REMARK 465 GLU D 101 REMARK 465 GLN D 102 REMARK 465 LYS D 103 REMARK 465 SER D 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 106 CG CD OE1 OE2 REMARK 470 LYS C 109 CG CD CE NZ REMARK 470 LYS C 110 CG CD CE NZ REMARK 470 LYS C 114 CG CD CE NZ REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 LYS D 114 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2090 O HOH B 2126 2.13 REMARK 500 OE2 GLU D 107 O HOH D 2002 2.16 REMARK 500 O HOH A 2151 O HOH A 2152 2.17 REMARK 500 O HOH A 2150 O HOH A 2153 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 141 -96.99 -85.52 REMARK 500 SER A 149 -74.28 68.08 REMARK 500 LYS A 184 18.32 55.92 REMARK 500 ASN A 268 -19.52 -49.55 REMARK 500 ASP B 20 32.10 -72.01 REMARK 500 ARG B 34 56.48 -92.73 REMARK 500 GLU B 35 147.36 -170.64 REMARK 500 SER B 94 -176.60 -175.79 REMARK 500 PRO B 114 109.75 -47.69 REMARK 500 ASN B 115 95.27 -66.16 REMARK 500 PHE B 138 157.51 -47.01 REMARK 500 LYS B 141 -98.85 -89.28 REMARK 500 SER B 149 -61.84 83.29 REMARK 500 LYS B 184 24.33 49.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2027 DISTANCE = 6.43 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MAGNESIUM ION (MG): MG 2+ ION REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 500 O2G REMARK 620 2 ANP A 500 O1B 82.6 REMARK 620 3 HOH A2004 O 90.6 94.6 REMARK 620 4 HOH A2005 O 171.7 89.2 90.5 REMARK 620 5 HOH A2096 O 93.3 173.7 90.1 94.9 REMARK 620 6 HOH A2108 O 93.9 90.4 173.7 85.8 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 500 O1B REMARK 620 2 ANP B 500 O2G 89.9 REMARK 620 3 HOH B2002 O 101.4 101.5 REMARK 620 4 HOH B2003 O 90.5 173.4 84.9 REMARK 620 5 HOH B2082 O 166.7 89.0 91.8 89.1 REMARK 620 6 HOH B2090 O 84.9 96.2 161.2 77.2 82.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MWK RELATED DB: PDB REMARK 900 PARM FROM PLASMID R1 APO FORM REMARK 900 RELATED ID: 1MWM RELATED DB: PDB REMARK 900 PARM FROM PLASMID R1 ADP FORM REMARK 900 RELATED ID: 4A61 RELATED DB: PDB REMARK 900 PARM FROM PLASMID R1 IN COMPLEX WITH AMPPNP DBREF 4A62 A 1 320 UNP P11904 PARM_ECOLX 1 320 DBREF 4A62 B 1 320 UNP P11904 PARM_ECOLX 1 320 DBREF 4A62 C 101 117 UNP P11906 STBB_ECOLX 101 117 DBREF 4A62 D 101 117 UNP P11906 STBB_ECOLX 101 117 SEQADV 4A62 ALA A 163 UNP P11904 LEU 163 ENGINEERED MUTATION SEQADV 4A62 ALA B 163 UNP P11904 LEU 163 ENGINEERED MUTATION SEQRES 1 A 320 MET LEU VAL PHE ILE ASP ASP GLY SER THR ASN ILE LYS SEQRES 2 A 320 LEU GLN TRP GLN GLU SER ASP GLY THR ILE LYS GLN HIS SEQRES 3 A 320 ILE SER PRO ASN SER PHE LYS ARG GLU TRP ALA VAL SER SEQRES 4 A 320 PHE GLY ASP LYS LYS VAL PHE ASN TYR THR LEU ASN GLY SEQRES 5 A 320 GLU GLN TYR SER PHE ASP PRO ILE SER PRO ASP ALA VAL SEQRES 6 A 320 VAL THR THR ASN ILE ALA TRP GLN TYR SER ASP VAL ASN SEQRES 7 A 320 VAL VAL ALA VAL HIS HIS ALA LEU LEU THR SER GLY LEU SEQRES 8 A 320 PRO VAL SER GLU VAL ASP ILE VAL CYS THR LEU PRO LEU SEQRES 9 A 320 THR GLU TYR TYR ASP ARG ASN ASN GLN PRO ASN THR GLU SEQRES 10 A 320 ASN ILE GLU ARG LYS LYS ALA ASN PHE ARG LYS LYS ILE SEQRES 11 A 320 THR LEU ASN GLY GLY ASP THR PHE THR ILE LYS ASP VAL SEQRES 12 A 320 LYS VAL MET PRO GLU SER ILE PRO ALA GLY TYR GLU VAL SEQRES 13 A 320 LEU GLN GLU LEU ASP GLU ALA ASP SER LEU LEU ILE ILE SEQRES 14 A 320 ASP LEU GLY GLY THR THR LEU ASP ILE SER GLN VAL MET SEQRES 15 A 320 GLY LYS LEU SER GLY ILE SER LYS ILE TYR GLY ASP SER SEQRES 16 A 320 SER LEU GLY VAL SER LEU VAL THR SER ALA VAL LYS ASP SEQRES 17 A 320 ALA LEU SER LEU ALA ARG THR LYS GLY SER SER TYR LEU SEQRES 18 A 320 ALA ASP ASP ILE ILE ILE HIS ARG LYS ASP ASN ASN TYR SEQRES 19 A 320 LEU LYS GLN ARG ILE ASN ASP GLU ASN LYS ILE SER ILE SEQRES 20 A 320 VAL THR GLU ALA MET ASN GLU ALA LEU ARG LYS LEU GLU SEQRES 21 A 320 GLN ARG VAL LEU ASN THR LEU ASN GLU PHE SER GLY TYR SEQRES 22 A 320 THR HIS VAL MET VAL ILE GLY GLY GLY ALA GLU LEU ILE SEQRES 23 A 320 CYS ASP ALA VAL LYS LYS HIS THR GLN ILE ARG ASP GLU SEQRES 24 A 320 ARG PHE PHE LYS THR ASN ASN SER GLN TYR ASP LEU VAL SEQRES 25 A 320 ASN GLY MET TYR LEU ILE GLY ASN SEQRES 1 B 320 MET LEU VAL PHE ILE ASP ASP GLY SER THR ASN ILE LYS SEQRES 2 B 320 LEU GLN TRP GLN GLU SER ASP GLY THR ILE LYS GLN HIS SEQRES 3 B 320 ILE SER PRO ASN SER PHE LYS ARG GLU TRP ALA VAL SER SEQRES 4 B 320 PHE GLY ASP LYS LYS VAL PHE ASN TYR THR LEU ASN GLY SEQRES 5 B 320 GLU GLN TYR SER PHE ASP PRO ILE SER PRO ASP ALA VAL SEQRES 6 B 320 VAL THR THR ASN ILE ALA TRP GLN TYR SER ASP VAL ASN SEQRES 7 B 320 VAL VAL ALA VAL HIS HIS ALA LEU LEU THR SER GLY LEU SEQRES 8 B 320 PRO VAL SER GLU VAL ASP ILE VAL CYS THR LEU PRO LEU SEQRES 9 B 320 THR GLU TYR TYR ASP ARG ASN ASN GLN PRO ASN THR GLU SEQRES 10 B 320 ASN ILE GLU ARG LYS LYS ALA ASN PHE ARG LYS LYS ILE SEQRES 11 B 320 THR LEU ASN GLY GLY ASP THR PHE THR ILE LYS ASP VAL SEQRES 12 B 320 LYS VAL MET PRO GLU SER ILE PRO ALA GLY TYR GLU VAL SEQRES 13 B 320 LEU GLN GLU LEU ASP GLU ALA ASP SER LEU LEU ILE ILE SEQRES 14 B 320 ASP LEU GLY GLY THR THR LEU ASP ILE SER GLN VAL MET SEQRES 15 B 320 GLY LYS LEU SER GLY ILE SER LYS ILE TYR GLY ASP SER SEQRES 16 B 320 SER LEU GLY VAL SER LEU VAL THR SER ALA VAL LYS ASP SEQRES 17 B 320 ALA LEU SER LEU ALA ARG THR LYS GLY SER SER TYR LEU SEQRES 18 B 320 ALA ASP ASP ILE ILE ILE HIS ARG LYS ASP ASN ASN TYR SEQRES 19 B 320 LEU LYS GLN ARG ILE ASN ASP GLU ASN LYS ILE SER ILE SEQRES 20 B 320 VAL THR GLU ALA MET ASN GLU ALA LEU ARG LYS LEU GLU SEQRES 21 B 320 GLN ARG VAL LEU ASN THR LEU ASN GLU PHE SER GLY TYR SEQRES 22 B 320 THR HIS VAL MET VAL ILE GLY GLY GLY ALA GLU LEU ILE SEQRES 23 B 320 CYS ASP ALA VAL LYS LYS HIS THR GLN ILE ARG ASP GLU SEQRES 24 B 320 ARG PHE PHE LYS THR ASN ASN SER GLN TYR ASP LEU VAL SEQRES 25 B 320 ASN GLY MET TYR LEU ILE GLY ASN SEQRES 1 C 17 GLU GLN LYS SER ASP GLU GLU THR LYS LYS ASN ALA MET SEQRES 2 C 17 LYS LEU ILE ASN SEQRES 1 D 17 GLU GLN LYS SER ASP GLU GLU THR LYS LYS ASN ALA MET SEQRES 2 D 17 LYS LEU ILE ASN HET ANP A 500 31 HET MG A 501 1 HET ANP B 500 31 HET MG B 501 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *385(H2 O) HELIX 1 1 ILE A 70 TYR A 74 5 5 HELIX 2 2 SER A 75 THR A 88 1 14 HELIX 3 3 PRO A 103 TYR A 108 1 6 HELIX 4 4 ASN A 115 PHE A 126 1 12 HELIX 5 5 SER A 149 ALA A 152 5 4 HELIX 6 6 GLY A 153 GLU A 159 1 7 HELIX 7 7 LYS A 184 SER A 186 5 3 HELIX 8 8 VAL A 199 ALA A 213 1 15 HELIX 9 9 SER A 218 HIS A 228 1 11 HELIX 10 10 ASP A 231 ILE A 239 1 9 HELIX 11 11 ASP A 241 ASN A 243 5 3 HELIX 12 12 LYS A 244 ASN A 268 1 25 HELIX 13 13 GLY A 282 GLN A 295 1 14 HELIX 14 14 ARG A 297 GLU A 299 5 3 HELIX 15 15 ASN A 306 GLN A 308 5 3 HELIX 16 16 TYR A 309 ASN A 320 1 12 HELIX 17 17 ASN B 69 TYR B 74 5 6 HELIX 18 18 SER B 75 THR B 88 1 14 HELIX 19 19 PRO B 103 TYR B 108 1 6 HELIX 20 20 ASN B 115 PHE B 126 1 12 HELIX 21 21 SER B 149 ALA B 152 5 4 HELIX 22 22 GLY B 153 GLN B 158 1 6 HELIX 23 23 LYS B 184 SER B 186 5 3 HELIX 24 24 VAL B 199 ALA B 213 1 15 HELIX 25 25 SER B 218 HIS B 228 1 11 HELIX 26 26 ASP B 231 ILE B 239 1 9 HELIX 27 27 ASP B 241 ASN B 243 5 3 HELIX 28 28 LYS B 244 ASN B 268 1 25 HELIX 29 29 GLY B 282 GLN B 295 1 14 HELIX 30 30 ARG B 297 GLU B 299 5 3 HELIX 31 31 ASN B 306 GLN B 308 5 3 HELIX 32 32 TYR B 309 ASN B 320 1 12 HELIX 33 33 ASP C 105 MET C 113 1 9 HELIX 34 34 LYS C 114 ILE C 116 5 3 HELIX 35 35 ASP D 105 MET D 113 1 9 SHEET 1 AA 5 ILE A 23 PRO A 29 0 SHEET 2 AA 5 ASN A 11 GLN A 17 -1 O ILE A 12 N SER A 28 SHEET 3 AA 5 LEU A 2 ASP A 7 -1 O LEU A 2 N GLN A 17 SHEET 4 AA 5 GLU A 95 LEU A 102 1 O ASP A 97 N VAL A 3 SHEET 5 AA 5 THR A 139 PRO A 147 1 O THR A 139 N VAL A 96 SHEET 1 AB 4 PHE A 32 LYS A 33 0 SHEET 2 AB 4 GLU A 53 PHE A 57 -1 O SER A 56 N LYS A 33 SHEET 3 AB 4 ASN A 47 LEU A 50 -1 O TYR A 48 N TYR A 55 SHEET 4 AB 4 ILE A 130 LEU A 132 -1 O THR A 131 N THR A 49 SHEET 1 AC 5 ILE A 188 ASP A 194 0 SHEET 2 AC 5 LEU A 176 MET A 182 -1 O LEU A 176 N ASP A 194 SHEET 3 AC 5 SER A 165 LEU A 171 -1 O LEU A 166 N VAL A 181 SHEET 4 AC 5 HIS A 275 ILE A 279 1 O HIS A 275 N LEU A 167 SHEET 5 AC 5 PHE A 301 PHE A 302 1 O PHE A 302 N VAL A 278 SHEET 1 BA 5 ILE B 23 PRO B 29 0 SHEET 2 BA 5 ASN B 11 GLN B 17 -1 O ILE B 12 N SER B 28 SHEET 3 BA 5 LEU B 2 ASP B 7 -1 O PHE B 4 N GLN B 15 SHEET 4 BA 5 GLU B 95 LEU B 102 1 O ASP B 97 N VAL B 3 SHEET 5 BA 5 THR B 139 PRO B 147 1 O THR B 139 N VAL B 96 SHEET 1 BB 4 PHE B 32 LYS B 33 0 SHEET 2 BB 4 GLU B 53 PHE B 57 -1 O SER B 56 N LYS B 33 SHEET 3 BB 4 ASN B 47 LEU B 50 -1 O TYR B 48 N TYR B 55 SHEET 4 BB 4 ILE B 130 LEU B 132 -1 O THR B 131 N THR B 49 SHEET 1 BC 5 ILE B 188 ASP B 194 0 SHEET 2 BC 5 LEU B 176 MET B 182 -1 O LEU B 176 N ASP B 194 SHEET 3 BC 5 SER B 165 LEU B 171 -1 O LEU B 166 N VAL B 181 SHEET 4 BC 5 HIS B 275 ILE B 279 1 O HIS B 275 N LEU B 167 SHEET 5 BC 5 PHE B 301 PHE B 302 1 O PHE B 302 N VAL B 278 LINK O2G ANP A 500 MG MG A 501 1555 1555 2.17 LINK O1B ANP A 500 MG MG A 501 1555 1555 2.08 LINK MG MG A 501 O HOH A2004 1555 1555 2.29 LINK MG MG A 501 O HOH A2005 1555 1555 2.41 LINK MG MG A 501 O HOH A2096 1555 1555 2.23 LINK MG MG A 501 O HOH A2108 1555 1555 2.32 LINK O1B ANP B 500 MG MG B 501 1555 1555 2.10 LINK O2G ANP B 500 MG MG B 501 1555 1555 2.10 LINK MG MG B 501 O HOH B2002 1555 1555 2.31 LINK MG MG B 501 O HOH B2003 1555 1555 2.29 LINK MG MG B 501 O HOH B2082 1555 1555 2.29 LINK MG MG B 501 O HOH B2090 1555 1555 2.28 SITE 1 AC1 27 GLY A 8 SER A 9 THR A 10 ASN A 11 SITE 2 AC1 27 LYS A 13 GLU A 148 GLY A 172 GLY A 173 SITE 3 AC1 27 THR A 174 THR A 175 VAL A 199 ASP A 223 SITE 4 AC1 27 ILE A 227 ARG A 229 GLY A 280 GLY A 281 SITE 5 AC1 27 GLY A 282 GLU A 284 GLN A 308 MG A 501 SITE 6 AC1 27 HOH A2013 HOH A2056 HOH A2107 HOH A2108 SITE 7 AC1 27 HOH A2112 HOH A2116 HOH A2139 SITE 1 AC2 5 ANP A 500 HOH A2004 HOH A2005 HOH A2096 SITE 2 AC2 5 HOH A2108 SITE 1 AC3 28 GLY B 8 SER B 9 THR B 10 ASN B 11 SITE 2 AC3 28 LYS B 13 GLU B 148 GLY B 172 GLY B 173 SITE 3 AC3 28 THR B 174 THR B 175 VAL B 199 ASP B 223 SITE 4 AC3 28 ILE B 227 GLY B 280 GLY B 281 GLY B 282 SITE 5 AC3 28 GLU B 284 LEU B 285 GLN B 308 MG B 501 SITE 6 AC3 28 HOH B2009 HOH B2053 HOH B2082 HOH B2088 SITE 7 AC3 28 HOH B2090 HOH B2092 HOH B2098 HOH B2169 SITE 1 AC4 5 ANP B 500 HOH B2002 HOH B2003 HOH B2082 SITE 2 AC4 5 HOH B2090 CRYST1 146.850 146.850 171.320 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006810 0.003932 0.000000 0.00000 SCALE2 0.000000 0.007863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005837 0.00000