data_4A6Q # _entry.id 4A6Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A6Q PDBE EBI-50040 WWPDB D_1290050040 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4A8X unspecified 'STRUCTURE OF THE CORE ASAP COMPLEX' PDB 4A90 unspecified 'CRYSTAL STRUCTURE OF MOUSE SAP18 RESIDUES 1-143' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A6Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-11-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murachelli, A.G.' 1 'Ebert, J.' 2 'Basquin, C.' 3 'Le Hir, H.' 4 'Conti, E.' 5 # _citation.id primary _citation.title 'The Structure of the Asap Core Complex Reveals the Existence of a Pinin-Containing Psap Complex' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 378 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22388736 _citation.pdbx_database_id_DOI 10.1038/NSMB.2242 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Murachelli, A.G.' 1 primary 'Ebert, J.' 2 primary 'Basquin, C.' 3 primary 'Le Hir, H.' 4 primary 'Conti, E.' 5 # _cell.entry_id 4A6Q _cell.length_a 50.368 _cell.length_b 73.631 _cell.length_c 86.704 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A6Q _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18' 16743.186 1 ? ? 'RESIDUES 6-143' ? 2 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 182 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '18 KDA SIN3-ASSOCIATED POLYPEPTIDE, SIN3-ASSOCIATED POLYPEPTIDE P18' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPDS(MSE)RVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHR(MSE)DEFSRGNVPSSELQIYTW(MSE)DATLKE LTSLVKEVYPEARKKGTHFNFAIVF(MSE)DLKRPGYRVKEIGST(MSE)SGRKGTDDS(MSE)TLQSQKFQIGDYLDIA ITPPNRA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPDSMRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEA RKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ASP n 1 4 SER n 1 5 MSE n 1 6 ARG n 1 7 VAL n 1 8 THR n 1 9 GLN n 1 10 GLU n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 LYS n 1 15 GLU n 1 16 PRO n 1 17 GLU n 1 18 LYS n 1 19 PRO n 1 20 ILE n 1 21 ASP n 1 22 ARG n 1 23 GLU n 1 24 LYS n 1 25 THR n 1 26 CYS n 1 27 PRO n 1 28 LEU n 1 29 LEU n 1 30 LEU n 1 31 ARG n 1 32 VAL n 1 33 PHE n 1 34 THR n 1 35 THR n 1 36 ASN n 1 37 ASN n 1 38 GLY n 1 39 ARG n 1 40 HIS n 1 41 HIS n 1 42 ARG n 1 43 MSE n 1 44 ASP n 1 45 GLU n 1 46 PHE n 1 47 SER n 1 48 ARG n 1 49 GLY n 1 50 ASN n 1 51 VAL n 1 52 PRO n 1 53 SER n 1 54 SER n 1 55 GLU n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 TYR n 1 60 THR n 1 61 TRP n 1 62 MSE n 1 63 ASP n 1 64 ALA n 1 65 THR n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 LEU n 1 70 THR n 1 71 SER n 1 72 LEU n 1 73 VAL n 1 74 LYS n 1 75 GLU n 1 76 VAL n 1 77 TYR n 1 78 PRO n 1 79 GLU n 1 80 ALA n 1 81 ARG n 1 82 LYS n 1 83 LYS n 1 84 GLY n 1 85 THR n 1 86 HIS n 1 87 PHE n 1 88 ASN n 1 89 PHE n 1 90 ALA n 1 91 ILE n 1 92 VAL n 1 93 PHE n 1 94 MSE n 1 95 ASP n 1 96 LEU n 1 97 LYS n 1 98 ARG n 1 99 PRO n 1 100 GLY n 1 101 TYR n 1 102 ARG n 1 103 VAL n 1 104 LYS n 1 105 GLU n 1 106 ILE n 1 107 GLY n 1 108 SER n 1 109 THR n 1 110 MSE n 1 111 SER n 1 112 GLY n 1 113 ARG n 1 114 LYS n 1 115 GLY n 1 116 THR n 1 117 ASP n 1 118 ASP n 1 119 SER n 1 120 MSE n 1 121 THR n 1 122 LEU n 1 123 GLN n 1 124 SER n 1 125 GLN n 1 126 LYS n 1 127 PHE n 1 128 GLN n 1 129 ILE n 1 130 GLY n 1 131 ASP n 1 132 TYR n 1 133 LEU n 1 134 ASP n 1 135 ILE n 1 136 ALA n 1 137 ILE n 1 138 THR n 1 139 PRO n 1 140 PRO n 1 141 ASN n 1 142 ARG n 1 143 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant PLYSS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector 'PET SERIES' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAP18_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O55128 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4A6Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 143 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O55128 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 143 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A6Q GLY A 1 ? UNP O55128 ? ? 'expression tag' 1 1 1 4A6Q PRO A 2 ? UNP O55128 ? ? 'expression tag' 2 2 1 4A6Q ASP A 3 ? UNP O55128 ? ? 'expression tag' 3 3 1 4A6Q SER A 4 ? UNP O55128 ? ? 'expression tag' 4 4 1 4A6Q MSE A 5 ? UNP O55128 ? ? 'expression tag' 5 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A6Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 50 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% ISOPROPANOL, 0.1 M BICINE PH 8.0.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2010-03-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9732 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.9732 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A6Q _reflns.observed_criterion_sigma_I 3.7 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 56.12 _reflns.d_resolution_high 1.50 _reflns.number_obs 25887 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.80 _reflns.B_iso_Wilson_estimate 17.19 _reflns.pdbx_redundancy 6.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.70 _reflns_shell.pdbx_redundancy 6.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A6Q _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25881 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.124 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 98.71 _refine.ls_R_factor_obs 0.1874 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1862 _refine.ls_R_factor_R_free 0.2111 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.14 _refine.ls_number_reflns_R_free 1329 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -4.1547 _refine.aniso_B[2][2] 2.9280 _refine.aniso_B[3][3] 1.2267 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.332 _refine.solvent_model_param_bsol 38.517 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.44 _refine.pdbx_overall_phase_error 18.63 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 1311 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 56.124 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 1233 'X-RAY DIFFRACTION' ? f_angle_d 1.356 ? ? 1683 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.598 ? ? 493 'X-RAY DIFFRACTION' ? f_chiral_restr 0.097 ? ? 186 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 218 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.5000 1.5601 2617 0.3096 97.00 0.3260 . . 157 . . 'X-RAY DIFFRACTION' . 1.5601 1.6311 2693 0.2476 98.00 0.2962 . . 134 . . 'X-RAY DIFFRACTION' . 1.6311 1.7171 2672 0.2189 99.00 0.2762 . . 143 . . 'X-RAY DIFFRACTION' . 1.7171 1.8247 2695 0.1875 98.00 0.2284 . . 145 . . 'X-RAY DIFFRACTION' . 1.8247 1.9655 2691 0.1714 99.00 0.2033 . . 158 . . 'X-RAY DIFFRACTION' . 1.9655 2.1634 2713 0.1691 99.00 0.1909 . . 168 . . 'X-RAY DIFFRACTION' . 2.1634 2.4764 2761 0.1705 99.00 0.1877 . . 146 . . 'X-RAY DIFFRACTION' . 2.4764 3.1200 2777 0.1749 100.00 0.2212 . . 149 . . 'X-RAY DIFFRACTION' . 3.1200 56.1632 2933 0.1855 100.00 0.1904 . . 129 . . # _struct.entry_id 4A6Q _struct.title 'Crystal structure of mouse SAP18 residues 6-143' _struct.pdbx_descriptor 'HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A6Q _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, SPLICING, RNA METABOLISM, UBIQUITIN-LIKE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? ILE A 12 ? THR A 8 ILE A 12 5 ? 5 HELX_P HELX_P2 2 ASP A 21 ? THR A 25 ? ASP A 21 THR A 25 5 ? 5 HELX_P HELX_P3 3 ARG A 42 ? SER A 47 ? ARG A 42 SER A 47 5 ? 6 HELX_P HELX_P4 4 THR A 65 ? TYR A 77 ? THR A 65 TYR A 77 1 ? 13 HELX_P HELX_P5 5 PRO A 78 ? LYS A 82 ? PRO A 78 LYS A 82 5 ? 5 HELX_P HELX_P6 6 LEU A 122 ? LYS A 126 ? LEU A 122 LYS A 126 5 ? 5 HELX_P HELX_P7 7 PRO A 139 ? ALA A 143 ? PRO A 139 ALA A 143 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 5 N ? ? ? 1_555 A SER 4 C ? ? A MSE 5 A SER 4 1_555 ? ? ? ? ? ? ? 1.306 ? covale2 covale ? ? A MSE 5 C ? ? ? 1_555 A ARG 6 N ? ? A MSE 5 A ARG 6 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A MSE 43 N ? ? ? 1_555 A ARG 42 C ? ? A MSE 43 A ARG 42 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 43 C ? ? ? 1_555 A ASP 44 N ? ? A MSE 43 A ASP 44 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? A MSE 62 N ? ? ? 1_555 A TRP 61 C ? ? A MSE 62 A TRP 61 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A MSE 62 C ? ? ? 1_555 A ASP 63 N ? ? A MSE 62 A ASP 63 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A MSE 94 C ? ? ? 1_555 A ASP 95 N ? ? A MSE 94 A ASP 95 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 94 N ? ? ? 1_555 A PHE 93 C ? ? A MSE 94 A PHE 93 1_555 ? ? ? ? ? ? ? 1.314 ? covale9 covale ? ? A MSE 110 C ? ? ? 1_555 A SER 111 N ? ? A MSE 110 A SER 111 1_555 ? ? ? ? ? ? ? 1.326 ? covale10 covale ? ? A MSE 110 N ? ? ? 1_555 A THR 109 C ? ? A MSE 110 A THR 109 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale ? ? A MSE 120 C ? ? ? 1_555 A THR 121 N ? ? A MSE 120 A THR 121 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale ? ? A MSE 120 N ? ? ? 1_555 A SER 119 C ? ? A MSE 120 A SER 119 1_555 ? ? ? ? ? ? ? 1.319 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 56 ? THR A 60 ? LEU A 56 THR A 60 AA 2 LEU A 28 ? THR A 35 ? LEU A 28 THR A 35 AA 3 TYR A 132 ? THR A 138 ? TYR A 132 THR A 138 AA 4 HIS A 86 ? MSE A 94 ? HIS A 86 MSE A 94 AA 5 TYR A 101 ? MSE A 110 ? TYR A 101 MSE A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 60 ? N THR A 60 O LEU A 28 ? O LEU A 28 AA 2 3 N PHE A 33 ? N PHE A 33 O LEU A 133 ? O LEU A 133 AA 3 4 N THR A 138 ? N THR A 138 O HIS A 86 ? O HIS A 86 AA 4 5 N PHE A 93 ? N PHE A 93 O ARG A 102 ? O ARG A 102 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE IPA A 1144' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MPD A 1145' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 THR A 34 ? THR A 34 . ? 1_555 ? 2 AC1 3 THR A 35 ? THR A 35 . ? 1_555 ? 3 AC1 3 TYR A 77 ? TYR A 77 . ? 1_555 ? 4 AC2 5 ILE A 91 ? ILE A 91 . ? 1_555 ? 5 AC2 5 GLN A 125 ? GLN A 125 . ? 1_555 ? 6 AC2 5 LYS A 126 ? LYS A 126 . ? 1_555 ? 7 AC2 5 ARG A 142 ? ARG A 142 . ? 8_475 ? 8 AC2 5 HOH D . ? HOH A 2168 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A6Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A6Q _atom_sites.fract_transf_matrix[1][1] 0.019854 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013581 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011533 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 MSE 5 5 5 MSE MSE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 MSE 43 43 43 MSE MSE A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 MSE 62 62 62 MSE MSE A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 MSE 94 94 94 MSE MSE A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 MSE 110 110 110 MSE MSE A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 MSE 120 120 120 MSE MSE A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 ALA 143 143 143 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA 1 1144 1144 IPA IPA A . C 3 MPD 1 1145 1145 MPD MPD A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2117 2117 HOH HOH A . D 4 HOH 117 2118 2118 HOH HOH A . D 4 HOH 118 2119 2119 HOH HOH A . D 4 HOH 119 2120 2120 HOH HOH A . D 4 HOH 120 2121 2121 HOH HOH A . D 4 HOH 121 2122 2122 HOH HOH A . D 4 HOH 122 2123 2123 HOH HOH A . D 4 HOH 123 2124 2124 HOH HOH A . D 4 HOH 124 2125 2125 HOH HOH A . D 4 HOH 125 2126 2126 HOH HOH A . D 4 HOH 126 2127 2127 HOH HOH A . D 4 HOH 127 2128 2128 HOH HOH A . D 4 HOH 128 2129 2129 HOH HOH A . D 4 HOH 129 2130 2130 HOH HOH A . D 4 HOH 130 2131 2131 HOH HOH A . D 4 HOH 131 2132 2132 HOH HOH A . D 4 HOH 132 2133 2133 HOH HOH A . D 4 HOH 133 2134 2134 HOH HOH A . D 4 HOH 134 2135 2135 HOH HOH A . D 4 HOH 135 2136 2136 HOH HOH A . D 4 HOH 136 2137 2137 HOH HOH A . D 4 HOH 137 2138 2138 HOH HOH A . D 4 HOH 138 2139 2139 HOH HOH A . D 4 HOH 139 2140 2140 HOH HOH A . D 4 HOH 140 2141 2141 HOH HOH A . D 4 HOH 141 2142 2142 HOH HOH A . D 4 HOH 142 2143 2143 HOH HOH A . D 4 HOH 143 2144 2144 HOH HOH A . D 4 HOH 144 2145 2145 HOH HOH A . D 4 HOH 145 2146 2146 HOH HOH A . D 4 HOH 146 2147 2147 HOH HOH A . D 4 HOH 147 2148 2148 HOH HOH A . D 4 HOH 148 2149 2149 HOH HOH A . D 4 HOH 149 2150 2150 HOH HOH A . D 4 HOH 150 2151 2151 HOH HOH A . D 4 HOH 151 2152 2152 HOH HOH A . D 4 HOH 152 2153 2153 HOH HOH A . D 4 HOH 153 2154 2154 HOH HOH A . D 4 HOH 154 2155 2155 HOH HOH A . D 4 HOH 155 2156 2156 HOH HOH A . D 4 HOH 156 2157 2157 HOH HOH A . D 4 HOH 157 2158 2158 HOH HOH A . D 4 HOH 158 2159 2159 HOH HOH A . D 4 HOH 159 2160 2160 HOH HOH A . D 4 HOH 160 2161 2161 HOH HOH A . D 4 HOH 161 2162 2162 HOH HOH A . D 4 HOH 162 2163 2163 HOH HOH A . D 4 HOH 163 2164 2164 HOH HOH A . D 4 HOH 164 2165 2165 HOH HOH A . D 4 HOH 165 2166 2166 HOH HOH A . D 4 HOH 166 2167 2167 HOH HOH A . D 4 HOH 167 2168 2168 HOH HOH A . D 4 HOH 168 2169 2169 HOH HOH A . D 4 HOH 169 2170 2170 HOH HOH A . D 4 HOH 170 2171 2171 HOH HOH A . D 4 HOH 171 2172 2172 HOH HOH A . D 4 HOH 172 2173 2173 HOH HOH A . D 4 HOH 173 2174 2174 HOH HOH A . D 4 HOH 174 2175 2175 HOH HOH A . D 4 HOH 175 2176 2176 HOH HOH A . D 4 HOH 176 2177 2177 HOH HOH A . D 4 HOH 177 2178 2178 HOH HOH A . D 4 HOH 178 2179 2179 HOH HOH A . D 4 HOH 179 2180 2180 HOH HOH A . D 4 HOH 180 2181 2181 HOH HOH A . D 4 HOH 181 2182 2182 HOH HOH A . D 4 HOH 182 2183 2183 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 5 A MSE 5 ? MET SELENOMETHIONINE 2 A MSE 43 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 62 A MSE 62 ? MET SELENOMETHIONINE 4 A MSE 94 A MSE 94 ? MET SELENOMETHIONINE 5 A MSE 110 A MSE 110 ? MET SELENOMETHIONINE 6 A MSE 120 A MSE 120 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2027 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2012-04-18 3 'Structure model' 1 2 2015-03-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' Other 4 3 'Structure model' 'Source and taxonomy' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 21.6734 _pdbx_refine_tls.origin_y 93.9418 _pdbx_refine_tls.origin_z 19.1586 _pdbx_refine_tls.T[1][1] 0.0514 _pdbx_refine_tls.T[2][2] 0.0451 _pdbx_refine_tls.T[3][3] 0.0380 _pdbx_refine_tls.T[1][2] -0.0071 _pdbx_refine_tls.T[1][3] 0.0200 _pdbx_refine_tls.T[2][3] -0.0063 _pdbx_refine_tls.L[1][1] 0.5736 _pdbx_refine_tls.L[2][2] 0.3890 _pdbx_refine_tls.L[3][3] 0.4416 _pdbx_refine_tls.L[1][2] -0.1344 _pdbx_refine_tls.L[1][3] 0.1545 _pdbx_refine_tls.L[2][3] 0.0886 _pdbx_refine_tls.S[1][1] -0.0172 _pdbx_refine_tls.S[1][2] -0.0460 _pdbx_refine_tls.S[1][3] -0.0020 _pdbx_refine_tls.S[2][1] 0.0339 _pdbx_refine_tls.S[2][2] 0.0120 _pdbx_refine_tls.S[2][3] -0.0469 _pdbx_refine_tls.S[3][1] 0.0417 _pdbx_refine_tls.S[3][2] -0.0160 _pdbx_refine_tls.S[3][3] 0.0039 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN A AND RESID 1:143' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE: 1.7.2_869)' ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 4A6Q _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'GPDSM ARE RESIDUALS FROM CLEAVAGE AND CLONING.' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2095 ? ? O A HOH 2096 ? ? 2.15 2 1 OD1 A ASP 44 ? ? O A HOH 2086 ? ? 2.17 3 1 O A HOH 2029 ? ? O A HOH 2030 ? ? 2.19 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2006 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.84 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 9 ? CG ? A GLN 9 CG 2 1 Y 1 A GLN 9 ? CD ? A GLN 9 CD 3 1 Y 1 A GLN 9 ? OE1 ? A GLN 9 OE1 4 1 Y 1 A GLN 9 ? NE2 ? A GLN 9 NE2 5 1 Y 1 A GLU 10 ? CG ? A GLU 10 CG 6 1 Y 1 A GLU 10 ? CD ? A GLU 10 CD 7 1 Y 1 A GLU 10 ? OE1 ? A GLU 10 OE1 8 1 Y 1 A GLU 10 ? OE2 ? A GLU 10 OE2 9 1 Y 1 A LYS 13 ? CG ? A LYS 13 CG 10 1 Y 1 A LYS 13 ? CD ? A LYS 13 CD 11 1 Y 1 A LYS 13 ? CE ? A LYS 13 CE 12 1 Y 1 A LYS 13 ? NZ ? A LYS 13 NZ 13 1 Y 1 A LYS 14 ? CG ? A LYS 14 CG 14 1 Y 1 A LYS 14 ? CD ? A LYS 14 CD 15 1 Y 1 A LYS 14 ? CE ? A LYS 14 CE 16 1 Y 1 A LYS 14 ? NZ ? A LYS 14 NZ 17 1 Y 1 A GLU 23 ? CG ? A GLU 23 CG 18 1 Y 1 A GLU 23 ? CD ? A GLU 23 CD 19 1 Y 1 A GLU 23 ? OE1 ? A GLU 23 OE1 20 1 Y 1 A GLU 23 ? OE2 ? A GLU 23 OE2 21 1 Y 1 A GLU 79 ? CG ? A GLU 79 CG 22 1 Y 1 A GLU 79 ? CD ? A GLU 79 CD 23 1 Y 1 A GLU 79 ? OE1 ? A GLU 79 OE1 24 1 Y 1 A GLU 79 ? OE2 ? A GLU 79 OE2 25 1 Y 1 A LYS 83 ? CG ? A LYS 83 CG 26 1 Y 1 A LYS 83 ? CD ? A LYS 83 CD 27 1 Y 1 A LYS 83 ? CE ? A LYS 83 CE 28 1 Y 1 A LYS 83 ? NZ ? A LYS 83 NZ 29 1 Y 1 A ARG 98 ? CZ ? A ARG 98 CZ 30 1 Y 1 A ARG 98 ? NH1 ? A ARG 98 NH1 31 1 Y 1 A ARG 98 ? NH2 ? A ARG 98 NH2 32 1 Y 1 A LYS 114 ? CG ? A LYS 114 CG 33 1 Y 1 A LYS 114 ? CD ? A LYS 114 CD 34 1 Y 1 A LYS 114 ? CE ? A LYS 114 CE 35 1 Y 1 A LYS 114 ? NZ ? A LYS 114 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH #