HEADER TRANSFERASE 09-NOV-11 4A6W TITLE X-RAY STRUCTURES OF OXAZOLE HYDROXAMATE ECMETAP-MN COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONINE AMINOTRANSFERASE; COMPND 5 EC: 3.4.11.18 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HUGUET,A.MELET,R.ALVESDESOUSA,A.LIEUTAUD,J.CHEVALIER,P.DESCHAMPS, AUTHOR 2 A.TOMAS,N.LEULLIOT,J.M.PAGES,I.ARTAUD REVDAT 2 20-DEC-23 4A6W 1 REMARK LINK REVDAT 1 13-JUN-12 4A6W 0 JRNL AUTH F.HUGUET,A.MELET,R.ALVES DE SOUSA,A.LIEUTAUD,J.CHEVALIER, JRNL AUTH 2 L.MAIGRE,P.DESCHAMPS,A.TOMAS,N.LEULLIOT,J.M.PAGES,I.ARTAUD JRNL TITL HYDROXAMIC ACIDS AS POTENT INHIBITORS OF FE(II) AND MN(II) JRNL TITL 2 E. COLI METHIONINE AMINOPEPTIDASE: BIOLOGICAL ACTIVITIES AND JRNL TITL 3 X-RAY STRUCTURES OF OXAZOLE HYDROXAMATE-ECMETAP-MN JRNL TITL 4 COMPLEXES. JRNL REF CHEMMEDCHEM V. 7 1020 2012 JRNL REFN ISSN 1860-7179 JRNL PMID 22489069 JRNL DOI 10.1002/CMDC.201200076 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 36995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 547 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2083 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2820 ; 2.049 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 6.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.648 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;12.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1555 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 2.146 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2120 ; 2.957 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 4.846 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 700 ; 6.849 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2083 ; 2.566 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4A6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 31.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2MAT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 ILE A 144 CD1 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2222 O HOH A 2227 0.72 REMARK 500 O HOH A 2385 O HOH A 2386 0.96 REMARK 500 O HOH A 2218 O HOH A 2224 1.04 REMARK 500 O HOH A 2371 O HOH A 2442 1.14 REMARK 500 O HOH A 2225 O HOH A 2226 1.23 REMARK 500 O HOH A 2469 O HOH A 2511 1.24 REMARK 500 O HOH A 2497 O HOH A 2498 1.28 REMARK 500 O HOH A 2356 O HOH A 2357 1.31 REMARK 500 O HOH A 2229 O HOH A 2231 1.31 REMARK 500 O HOH A 2413 O HOH A 2417 1.32 REMARK 500 O HOH A 2250 O HOH A 2501 1.34 REMARK 500 NH1 ARG A 19 O HOH A 2062 1.36 REMARK 500 NE2 GLN A 175 O HOH A 2422 1.37 REMARK 500 O HOH A 2222 O HOH A 2223 1.48 REMARK 500 O HOH A 2422 O HOH A 2424 1.51 REMARK 500 O HOH A 2542 O HOH A 2543 1.52 REMARK 500 O HOH A 2383 O HOH A 2384 1.52 REMARK 500 O HOH A 2196 O HOH A 2411 1.53 REMARK 500 O HOH A 2514 O HOH A 2515 1.60 REMARK 500 O HOH A 2134 O HOH A 2300 1.61 REMARK 500 O HOH A 2422 O HOH A 2423 1.61 REMARK 500 O HOH A 2232 O HOH A 2234 1.62 REMARK 500 O HOH A 2472 O HOH A 2505 1.62 REMARK 500 O HOH A 2043 O HOH A 2311 1.63 REMARK 500 O HOH A 2254 O HOH A 2255 1.63 REMARK 500 CB THR A 119 O HOH A 2328 1.64 REMARK 500 NE ARG A 138 O HOH A 2356 1.68 REMARK 500 O HOH A 2431 O HOH A 2432 1.71 REMARK 500 O HOH A 2416 O HOH A 2417 1.77 REMARK 500 O HOH A 2026 O HOH A 2066 1.79 REMARK 500 O HOH A 2038 O HOH A 2039 1.81 REMARK 500 O HOH A 2308 O HOH A 2309 1.83 REMARK 500 O HOH A 2346 O HOH A 2348 1.88 REMARK 500 O HOH A 2471 O HOH A 2472 1.88 REMARK 500 O HOH A 2516 O HOH A 2517 1.88 REMARK 500 O HOH A 2028 O HOH A 2065 1.93 REMARK 500 O HOH A 2367 O HOH A 2373 1.94 REMARK 500 O HOH A 2529 O HOH A 2534 1.98 REMARK 500 SG CYS A 59 O HOH A 2195 1.99 REMARK 500 O HOH A 2115 O HOH A 2116 1.99 REMARK 500 OD1 ASP A 90 O HOH A 2289 2.01 REMARK 500 O HOH A 2245 O HOH A 2488 2.01 REMARK 500 O HOH A 2426 O HOH A 2429 2.01 REMARK 500 O HOH A 2202 O HOH A 2429 2.03 REMARK 500 NH2 ARG A 138 O HOH A 2356 2.04 REMARK 500 O HOH A 2088 O HOH A 2233 2.05 REMARK 500 O HOH A 2395 O HOH A 2396 2.06 REMARK 500 OD2 ASP A 103 O HOH A 2312 2.06 REMARK 500 O HOH A 2280 O HOH A 2515 2.06 REMARK 500 NH2 ARG A 19 O HOH A 2064 2.09 REMARK 500 REMARK 500 THIS ENTRY HAS 65 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2155 O HOH A 2336 2656 1.66 REMARK 500 CD GLU A 190 O HOH A 2310 2545 1.67 REMARK 500 O HOH A 2068 O HOH A 2326 2656 1.80 REMARK 500 OE2 GLU A 190 O HOH A 2310 2545 1.91 REMARK 500 OE1 GLU A 190 O HOH A 2310 2545 2.06 REMARK 500 O HOH A 2161 O HOH A 2271 2556 2.11 REMARK 500 O HOH A 2199 O HOH A 2547 1455 2.13 REMARK 500 O HOH A 2049 O HOH A 2281 1556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 135 CA - CB - CG ANGL. DEV. = 21.7 DEGREES REMARK 500 LEU A 135 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 263 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 -118.03 55.80 REMARK 500 ASN A 192 79.42 -151.17 REMARK 500 GLU A 204 60.59 -159.71 REMARK 500 TRP A 221 -53.75 -128.25 REMARK 500 HIS A 262 -169.00 -111.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2024 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A2099 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A2165 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2186 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2243 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A2302 DISTANCE = 7.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 97 OD2 51.5 REMARK 620 3 ASP A 108 OD1 111.1 160.5 REMARK 620 4 GLU A 235 OE1 97.5 98.1 92.7 REMARK 620 5 5C1 A1265 OAB 134.2 83.5 111.5 96.6 REMARK 620 6 5C1 A1265 NAL 118.2 75.5 112.3 121.7 25.8 REMARK 620 7 HOH A2303 O 73.4 81.5 84.8 168.8 94.4 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1264 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 HIS A 171 NE2 87.1 REMARK 620 3 GLU A 204 OE2 143.6 86.0 REMARK 620 4 GLU A 235 OE2 77.5 122.6 76.4 REMARK 620 5 5C1 A1265 OAO 104.5 78.7 109.0 158.7 REMARK 620 6 5C1 A1265 OAB 91.8 146.8 112.7 89.3 69.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5C1 A 1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A6V RELATED DB: PDB REMARK 900 X-RAY STRUCTURES OF OXAZOLE HYDROXAMATE ECMETAP-MN COMPLEXES DBREF 4A6W A 1 264 UNP C6EAB7 C6EAB7_ECOBD 1 264 SEQADV 4A6W GLN A 175 UNP C6EAB7 ARG 175 CONFLICT SEQRES 1 A 264 MET ALA ILE SER ILE LYS THR PRO GLU ASP ILE GLU LYS SEQRES 2 A 264 MET ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU SEQRES 3 A 264 MET ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY SEQRES 4 A 264 GLU LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU SEQRES 5 A 264 GLN HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR SEQRES 6 A 264 PRO LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS SEQRES 7 A 264 HIS GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY SEQRES 8 A 264 ASP ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY SEQRES 9 A 264 PHE HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS SEQRES 10 A 264 PRO THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN SEQRES 11 A 264 GLU SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY SEQRES 12 A 264 ILE ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE SEQRES 13 A 264 VAL GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS SEQRES 14 A 264 GLY HIS GLY ILE GLY GLN GLY PHE HIS GLU GLU PRO GLN SEQRES 15 A 264 VAL LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU SEQRES 16 A 264 LYS PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN SEQRES 17 A 264 ALA GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP SEQRES 18 A 264 THR VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR SEQRES 19 A 264 GLU HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE SEQRES 20 A 264 LEU THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SEQRES 21 A 264 SER HIS ASP GLU HET MN A1264 1 HET 5C1 A1265 16 HET MN A1266 1 HETNAM MN MANGANESE (II) ION HETNAM 5C1 5-(2-CHLOROPHENYL)-N-HYDROXY-1,3-OXAZOLE-2-CARBOXAMIDE FORMUL 2 MN 2(MN 2+) FORMUL 3 5C1 C10 H7 CL N2 O3 FORMUL 5 HOH *547(H2 O) HELIX 1 1 THR A 7 GLU A 29 1 23 HELIX 2 2 PRO A 30 VAL A 32 5 3 HELIX 3 3 SER A 37 GLU A 52 1 16 HELIX 4 4 GLY A 61 TYR A 65 5 5 HELIX 5 5 THR A 119 VAL A 140 1 22 HELIX 6 6 ASN A 145 GLU A 160 1 16 SHEET 1 AA 2 VAL A 56 SER A 57 0 SHEET 2 AA 2 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 1 AB 2 CYS A 70 ILE A 73 0 SHEET 2 AB 2 ILE A 93 LYS A 102 -1 O ASN A 95 N SER A 72 SHEET 1 AC 2 PHE A 105 ILE A 114 0 SHEET 2 AC 2 ILE A 93 LYS A 102 -1 O VAL A 94 N PHE A 113 SHEET 1 AD 3 VAL A 76 CYS A 78 0 SHEET 2 AD 3 VAL A 223 THR A 225 -1 O VAL A 223 N VAL A 77 SHEET 3 AD 3 ILE A 214 THR A 216 -1 O ARG A 215 N LYS A 224 SHEET 1 AE 3 SER A 163 VAL A 164 0 SHEET 2 AE 3 MET A 206 ASN A 208 -1 O ASN A 208 N SER A 163 SHEET 3 AE 3 SER A 231 GLN A 233 -1 O ALA A 232 N VAL A 207 SHEET 1 AF 2 GLY A 170 GLY A 172 0 SHEET 2 AF 2 GLU A 179 VAL A 183 -1 O GLU A 179 N GLY A 172 SHEET 1 AG 4 THR A 200 ILE A 203 0 SHEET 2 AG 4 HIS A 236 THR A 241 -1 O HIS A 236 N ILE A 203 SHEET 3 AG 4 GLY A 244 ILE A 247 -1 O GLY A 244 N THR A 241 SHEET 4 AG 4 ILE A 259 SER A 261 -1 O ILE A 260 N CYS A 245 LINK OD1 ASP A 97 MN MN A1266 1555 1555 2.05 LINK OD2 ASP A 97 MN MN A1266 1555 1555 2.68 LINK OD2 ASP A 108 MN MN A1264 1555 1555 2.23 LINK OD1 ASP A 108 MN MN A1266 1555 1555 2.15 LINK NE2 HIS A 171 MN MN A1264 1555 1555 2.29 LINK OE2 GLU A 204 MN MN A1264 1555 1555 2.21 LINK OE2 GLU A 235 MN MN A1264 1555 1555 2.25 LINK OE1 GLU A 235 MN MN A1266 1555 1555 2.14 LINK MN MN A1264 OAO 5C1 A1265 1555 1555 2.34 LINK MN MN A1264 OAB 5C1 A1265 1555 1555 2.33 LINK OAB 5C1 A1265 MN MN A1266 1555 1555 1.88 LINK NAL 5C1 A1265 MN MN A1266 1555 1555 2.71 LINK MN MN A1266 O HOH A2303 1555 1555 2.05 CISPEP 1 GLU A 180 PRO A 181 0 1.73 SITE 1 AC1 6 ASP A 108 HIS A 171 GLU A 204 GLU A 235 SITE 2 AC1 6 5C1 A1265 MN A1266 SITE 1 AC2 16 CYS A 59 TYR A 62 TYR A 65 HIS A 79 SITE 2 AC2 16 ASP A 97 ASP A 108 HIS A 171 PHE A 177 SITE 3 AC2 16 HIS A 178 GLU A 204 TRP A 221 GLU A 235 SITE 4 AC2 16 MN A1264 MN A1266 HOH A2217 HOH A2303 SITE 1 AC3 6 ASP A 97 ASP A 108 GLU A 235 MN A1264 SITE 2 AC3 6 5C1 A1265 HOH A2303 CRYST1 39.350 62.910 52.600 90.00 109.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025413 0.000000 0.008949 0.00000 SCALE2 0.000000 0.015896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020156 0.00000