HEADER CHAPERONE/DNA 11-NOV-11 4A75 TITLE THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXATHYMIDINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN28 COLD SHOCK DOMAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*TP*TP*TP*TP*TP)-3'; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: HEXATHYMIDINE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS (SILURANA) TROPICALIS; SOURCE 3 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8364; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS CHAPERONE-DNA COMPLEX, CHAPERONE, DNA/RNA-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.MAYR,A.SCHUETZ,N.DOEGE,U.HEINEMANN REVDAT 4 08-MAY-24 4A75 1 REMARK REVDAT 3 09-OCT-19 4A75 1 SOURCE REMARK REVDAT 2 04-APR-18 4A75 1 REMARK REVDAT 1 05-SEP-12 4A75 0 JRNL AUTH F.MAYR,A.SCHUTZ,N.DOGE,U.HEINEMANN JRNL TITL THE LIN28 COLD-SHOCK DOMAIN REMODELS PRE-LET-7 MICRORNA. JRNL REF NUCLEIC ACIDS RES. V. 40 7492 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22570413 JRNL DOI 10.1093/NAR/GKS355 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2734 REMARK 3 NUCLEIC ACID ATOMS : 400 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 506 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3302 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2278 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4515 ; 1.476 ; 2.114 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5539 ; 0.983 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 6.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;31.172 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;11.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3435 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 669 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1773 ; 1.731 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 740 ; 0.476 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2842 ; 2.710 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 3.590 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1666 ; 4.778 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7233 -3.8768 -0.2401 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.0924 REMARK 3 T33: 0.0791 T12: -0.0022 REMARK 3 T13: 0.0124 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.1393 L22: 7.1952 REMARK 3 L33: 4.1132 L12: 0.5199 REMARK 3 L13: -1.0469 L23: 1.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.4585 S13: -0.0241 REMARK 3 S21: 0.4380 S22: -0.0280 S23: -0.3969 REMARK 3 S31: 0.1101 S32: 0.2832 S33: -0.0132 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6102 -8.9400 -19.7828 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0580 REMARK 3 T33: 0.0666 T12: 0.0017 REMARK 3 T13: -0.0058 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.8987 L22: 1.8451 REMARK 3 L33: 6.1538 L12: 0.7900 REMARK 3 L13: -1.7990 L23: -0.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.0704 S13: -0.0058 REMARK 3 S21: -0.0229 S22: -0.0062 S23: -0.1026 REMARK 3 S31: 0.0287 S32: 0.0672 S33: 0.0322 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6526 -8.4854 -10.9256 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0317 REMARK 3 T33: 0.0534 T12: -0.0111 REMARK 3 T13: -0.0167 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.0727 L22: 1.1064 REMARK 3 L33: 2.1411 L12: -0.2172 REMARK 3 L13: -1.0449 L23: -0.0849 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.1168 S13: -0.0438 REMARK 3 S21: 0.1382 S22: -0.0020 S23: 0.0832 REMARK 3 S31: -0.0160 S32: -0.0324 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2860 -16.2911 -21.3619 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.0358 REMARK 3 T33: 0.0729 T12: -0.0051 REMARK 3 T13: -0.0182 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 9.6337 L22: 2.1968 REMARK 3 L33: 6.2417 L12: 1.4031 REMARK 3 L13: -4.6777 L23: -0.2060 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.2590 S13: -0.2099 REMARK 3 S21: -0.1271 S22: 0.0146 S23: 0.0486 REMARK 3 S31: 0.1650 S32: -0.0314 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8871 -6.2152 -9.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0784 REMARK 3 T33: 0.0450 T12: -0.0034 REMARK 3 T13: 0.0002 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.9057 L22: 3.8437 REMARK 3 L33: 1.2453 L12: -0.8243 REMARK 3 L13: -0.0192 L23: 1.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0319 S13: 0.1184 REMARK 3 S21: -0.0243 S22: -0.0082 S23: -0.0744 REMARK 3 S31: -0.0716 S32: 0.0115 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9179 -20.7951 -16.2057 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.0761 REMARK 3 T33: 0.1217 T12: 0.0001 REMARK 3 T13: -0.0074 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.3059 L22: 2.5409 REMARK 3 L33: 7.9529 L12: 1.0957 REMARK 3 L13: -1.1950 L23: 0.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.0811 S13: -0.1261 REMARK 3 S21: -0.1984 S22: 0.0300 S23: 0.1286 REMARK 3 S31: 0.4072 S32: -0.0470 S33: -0.1423 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 38 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5784 -13.3005 -4.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0869 REMARK 3 T33: 0.0899 T12: 0.0387 REMARK 3 T13: -0.0087 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 7.2758 L22: 7.2562 REMARK 3 L33: 3.0753 L12: 6.2831 REMARK 3 L13: 1.1891 L23: 1.6748 REMARK 3 S TENSOR REMARK 3 S11: 0.2324 S12: -0.3158 S13: 0.0147 REMARK 3 S21: 0.3533 S22: -0.2473 S23: 0.2957 REMARK 3 S31: 0.1531 S32: -0.2854 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 39 C 74 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8600 -10.0333 -9.7578 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0521 REMARK 3 T33: 0.0930 T12: -0.0157 REMARK 3 T13: -0.0016 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.5666 L22: 1.1968 REMARK 3 L33: 2.7884 L12: -0.4522 REMARK 3 L13: 0.3196 L23: -0.1181 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0599 S13: -0.0919 REMARK 3 S21: 0.0220 S22: -0.0173 S23: -0.0157 REMARK 3 S31: 0.1237 S32: 0.0631 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 75 C 87 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9859 -0.5925 -11.0497 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0309 REMARK 3 T33: 0.0745 T12: 0.0028 REMARK 3 T13: 0.0163 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.8751 L22: 3.7756 REMARK 3 L33: 8.0213 L12: -0.1431 REMARK 3 L13: 2.8289 L23: -2.2519 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 0.1137 S13: 0.1815 REMARK 3 S21: 0.0132 S22: 0.0370 S23: 0.0126 REMARK 3 S31: -0.2428 S32: -0.0132 S33: 0.0327 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 88 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1579 -9.8148 -8.7538 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.1070 REMARK 3 T33: 0.0433 T12: -0.0007 REMARK 3 T13: -0.0107 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.9143 L22: 3.9828 REMARK 3 L33: 2.7273 L12: 0.0138 REMARK 3 L13: -0.1885 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.1707 S13: -0.2344 REMARK 3 S21: -0.1690 S22: 0.0247 S23: -0.1239 REMARK 3 S31: 0.2051 S32: 0.1106 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 27 E 39 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9683 6.9693 4.5287 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.0868 REMARK 3 T33: 0.0898 T12: -0.0290 REMARK 3 T13: -0.0272 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.0292 L22: 3.3547 REMARK 3 L33: 4.3535 L12: -3.0317 REMARK 3 L13: -2.7834 L23: 2.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.2188 S12: 0.0974 S13: 0.1954 REMARK 3 S21: -0.2442 S22: -0.0718 S23: -0.1963 REMARK 3 S31: -0.2413 S32: 0.0382 S33: -0.1470 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 40 E 44 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2196 7.1180 23.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.1314 REMARK 3 T33: 0.0958 T12: -0.0570 REMARK 3 T13: 0.0138 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.9773 L22: 3.1444 REMARK 3 L33: 16.2738 L12: -1.9047 REMARK 3 L13: 2.5113 L23: -6.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.1755 S13: -0.1976 REMARK 3 S21: 0.1166 S22: 0.0326 S23: 0.1764 REMARK 3 S31: 0.0035 S32: -0.2577 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 45 E 72 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9274 6.9306 6.9155 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0459 REMARK 3 T33: 0.0720 T12: 0.0075 REMARK 3 T13: 0.0145 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.2633 L22: 1.0763 REMARK 3 L33: 1.6026 L12: 0.1507 REMARK 3 L13: 0.9266 L23: -0.1223 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.1399 S13: 0.0269 REMARK 3 S21: -0.1767 S22: -0.0094 S23: 0.1171 REMARK 3 S31: 0.0529 S32: -0.0890 S33: -0.0127 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 73 E 82 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7835 15.7012 17.4714 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.0432 REMARK 3 T33: 0.0859 T12: 0.0091 REMARK 3 T13: 0.0022 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 4.0970 L22: 3.4129 REMARK 3 L33: 7.1423 L12: -0.3955 REMARK 3 L13: 0.6614 L23: -0.6772 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: -0.2801 S13: 0.4357 REMARK 3 S21: 0.1212 S22: -0.0703 S23: -0.0009 REMARK 3 S31: -0.2666 S32: 0.1916 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 83 E 98 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6818 5.1135 6.3360 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0846 REMARK 3 T33: 0.0452 T12: -0.0044 REMARK 3 T13: -0.0171 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.9584 L22: 2.9304 REMARK 3 L33: 1.6924 L12: -0.3811 REMARK 3 L13: -0.7615 L23: 1.1467 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0346 S13: -0.1060 REMARK 3 S21: 0.0155 S22: 0.0217 S23: -0.1245 REMARK 3 S31: 0.0938 S32: 0.0505 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 99 E 113 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6151 16.1862 10.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0787 REMARK 3 T33: 0.0774 T12: -0.0066 REMARK 3 T13: -0.0064 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.1474 L22: 2.5478 REMARK 3 L33: 2.0863 L12: -0.0894 REMARK 3 L13: 0.2572 L23: -0.3390 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0885 S13: 0.1524 REMARK 3 S21: 0.0760 S22: -0.0200 S23: 0.1035 REMARK 3 S31: -0.2045 S32: -0.1042 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 27 G 43 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5195 9.8119 5.9178 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.0652 REMARK 3 T33: 0.0948 T12: -0.0557 REMARK 3 T13: 0.0304 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.7844 L22: 3.2813 REMARK 3 L33: 3.4359 L12: -0.4882 REMARK 3 L13: -0.5114 L23: 0.8675 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: 0.0171 S13: -0.0663 REMARK 3 S21: -0.1539 S22: 0.0049 S23: 0.1472 REMARK 3 S31: 0.0205 S32: -0.1233 S33: -0.0945 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 44 G 81 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4084 7.3521 5.5844 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0298 REMARK 3 T33: 0.0651 T12: 0.0177 REMARK 3 T13: -0.0060 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.5918 L22: 1.4446 REMARK 3 L33: 3.8883 L12: 0.2325 REMARK 3 L13: -0.4560 L23: -0.7397 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.0445 S13: -0.0095 REMARK 3 S21: -0.0817 S22: 0.0143 S23: 0.0009 REMARK 3 S31: 0.0069 S32: -0.0122 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 82 G 92 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9563 8.1596 2.5463 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.0891 REMARK 3 T33: 0.0147 T12: -0.0248 REMARK 3 T13: 0.0140 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 5.5662 L22: 10.5084 REMARK 3 L33: 1.8708 L12: -4.2983 REMARK 3 L13: -0.0360 L23: -0.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.0867 S13: -0.0766 REMARK 3 S21: 0.0406 S22: 0.0451 S23: 0.2624 REMARK 3 S31: -0.0519 S32: -0.0607 S33: 0.0204 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 93 G 113 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6438 6.5637 5.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0974 REMARK 3 T33: 0.0420 T12: 0.0033 REMARK 3 T13: 0.0032 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.8300 L22: 3.9435 REMARK 3 L33: 1.1819 L12: -0.2291 REMARK 3 L13: -0.3248 L23: -0.2538 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.1406 S13: 0.0767 REMARK 3 S21: 0.2876 S22: 0.0319 S23: -0.1208 REMARK 3 S31: -0.0349 S32: 0.0951 S33: -0.0184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98141 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 32.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75 MM PROTEIN-DNA COMPLEX (IN REMARK 280 20 MM TRIS/HCL, PH 7.5, 100 MM KCL, 2 MM MGCL2 REMARK 280 AND 1 MM DTT) AND 0.1 MM BIS-TRIS, PH 5.5, 15% (W/V) REMARK 280 PEG 3350 AND 0.1 M SODIUM THIOCYANATE AS RESERVOIR BUFFER, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.89950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.90950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.91100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.90950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.89950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.91100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 114 REMARK 465 DT B 2 REMARK 465 GLY C 25 REMARK 465 SER C 26 REMARK 465 GLU C 114 REMARK 465 GLY E 25 REMARK 465 GLU E 114 REMARK 465 DT F 2 REMARK 465 GLY G 25 REMARK 465 GLU G 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 7 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT B 7 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT B 7 C7 C6 REMARK 470 DT F 7 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT F 7 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 7 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP G 27 O HOH G 2005 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2078 O HOH H 2004 2554 0.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT F 3 P DT F 3 OP3 -0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 95 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 DT D 2 O4' - C1' - N1 ANGL. DEV. = -8.0 DEGREES REMARK 500 DT D 3 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT D 5 C4 - C5 - C7 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT D 5 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT F 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 ASP G 27 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 DT H 2 O4' - C1' - N1 ANGL. DEV. = -7.4 DEGREES REMARK 500 DT H 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT H 6 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT H 7 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 74.31 -155.89 REMARK 500 ASP E 27 69.83 -166.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G2017 DISTANCE = 6.31 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "EA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "GA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN E 1114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A76 RELATED DB: PDB REMARK 900 THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEPTATHYMIDINE REMARK 900 RELATED ID: 4ALP RELATED DB: PDB REMARK 900 THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXAURIDINE DBREF 4A75 A 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4A75 B 2 7 PDB 4A75 4A75 2 7 DBREF 4A75 C 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4A75 D 2 7 PDB 4A75 4A75 2 7 DBREF 4A75 E 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4A75 F 2 7 PDB 4A75 4A75 2 7 DBREF 4A75 G 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4A75 H 2 7 PDB 4A75 4A75 2 7 SEQADV 4A75 GLY A 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 SER A 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 GLY C 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 SER C 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 GLY E 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 SER E 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 GLY G 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4A75 SER G 26 UNP B4F6I0 EXPRESSION TAG SEQRES 1 A 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 A 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 A 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 A 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 A 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 A 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 A 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 B 6 DT DT DT DT DT DT SEQRES 1 C 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 C 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 C 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 C 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 C 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 C 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 C 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 D 6 DT DT DT DT DT DT SEQRES 1 E 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 E 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 E 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 E 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 E 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 E 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 E 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 F 6 DT DT DT DT DT DT SEQRES 1 G 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 G 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 G 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 G 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 G 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 G 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 G 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 H 6 DT DT DT DT DT DT HET SCN A1114 3 HET SCN E1114 3 HETNAM SCN THIOCYANATE ION FORMUL 9 SCN 2(C N S 1-) FORMUL 11 HOH *506(H2 O) HELIX 1 1 GLY A 104 ASN A 108 5 5 HELIX 2 2 GLY C 104 ASN C 108 5 5 HELIX 3 3 GLY E 104 ASN E 108 5 5 HELIX 4 4 GLY G 104 ASN G 108 5 5 SHEET 1 AA 6 LEU A 31 ASN A 41 0 SHEET 2 AA 6 PRO A 85 SER A 93 -1 O VAL A 86 N GLY A 35 SHEET 3 AA 6 GLY A 96 THR A 103 -1 O GLY A 96 N SER A 93 SHEET 4 AA 6 SER A 57 HIS A 68 1 O PHE A 66 N SER A 99 SHEET 5 AA 6 PHE A 46 ARG A 54 -1 O GLY A 47 N VAL A 67 SHEET 6 AA 6 LEU A 31 ASN A 41 -1 O SER A 34 N THR A 52 SHEET 1 CA 6 LEU C 31 ASN C 41 0 SHEET 2 CA 6 PRO C 85 SER C 93 -1 O VAL C 86 N GLY C 35 SHEET 3 CA 6 GLY C 96 THR C 103 -1 O GLY C 96 N SER C 93 SHEET 4 CA 6 SER C 57 HIS C 68 1 O PHE C 66 N SER C 99 SHEET 5 CA 6 PHE C 46 ARG C 54 -1 O GLY C 47 N VAL C 67 SHEET 6 CA 6 LEU C 31 ASN C 41 -1 O SER C 34 N THR C 52 SHEET 1 EA 6 LEU E 31 ASN E 41 0 SHEET 2 EA 6 PRO E 85 SER E 93 -1 O VAL E 86 N GLY E 35 SHEET 3 EA 6 GLY E 96 THR E 103 -1 O GLY E 96 N SER E 93 SHEET 4 EA 6 SER E 57 HIS E 68 1 O PHE E 66 N SER E 99 SHEET 5 EA 6 PHE E 46 ARG E 54 -1 O GLY E 47 N VAL E 67 SHEET 6 EA 6 LEU E 31 ASN E 41 -1 O SER E 34 N SER E 53 SHEET 1 GA 6 LEU G 31 ASN G 41 0 SHEET 2 GA 6 PRO G 85 SER G 93 -1 O VAL G 86 N GLY G 35 SHEET 3 GA 6 GLY G 96 THR G 103 -1 O GLY G 96 N SER G 93 SHEET 4 GA 6 SER G 57 HIS G 68 1 O PHE G 66 N SER G 99 SHEET 5 GA 6 PHE G 46 ARG G 54 -1 O GLY G 47 N VAL G 67 SHEET 6 GA 6 LEU G 31 ASN G 41 -1 O SER G 34 N THR G 52 SITE 1 AC1 2 DT H 4 DT H 5 SITE 1 AC2 3 THR E 89 ARG E 101 THR G 89 CRYST1 51.799 81.822 99.819 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010018 0.00000