HEADER TRANSFERASE 15-NOV-11 4A7X TITLE CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE, UMPK; COMPND 5 EC: 2.7.4.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 ATCC: 700392D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SG13009; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.CHU,M.H.LIU,P.C.CHEN,Y.J.SUN REVDAT 3 20-DEC-23 4A7X 1 REMARK REVDAT 2 11-JUL-12 4A7X 1 JRNL REVDAT 1 27-JUN-12 4A7X 0 JRNL AUTH C.H.CHU,P.C.CHEN,M.H.LIU,Y.C.LI,C.D.HSIAO,Y.J.SUN JRNL TITL STRUCTURES OF HELICOBACTER PYLORI URIDYLATE KINASE: INSIGHT JRNL TITL 2 INTO RELEASE OF THE PRODUCT UDP JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 773 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751662 JRNL DOI 10.1107/S0907444912011407 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 56433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10675 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14392 ; 1.208 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1371 ; 5.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 434 ;37.786 ;25.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1976 ;18.409 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1721 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7675 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6777 ; 1.232 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 10883 ; 2.236 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3898 ; 1.747 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3509 ; 3.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10675 ; 0.945 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 240 REMARK 3 ORIGIN FOR THE GROUP (A): 123.8060 -0.6099 64.6860 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0256 REMARK 3 T33: 0.0127 T12: -0.0020 REMARK 3 T13: -0.0305 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2537 L22: 0.0875 REMARK 3 L33: 0.1076 L12: -0.0806 REMARK 3 L13: 0.0482 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.0124 S13: -0.0119 REMARK 3 S21: 0.0011 S22: -0.0070 S23: -0.0028 REMARK 3 S31: 0.0087 S32: -0.0003 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 240 REMARK 3 ORIGIN FOR THE GROUP (A): 88.4850 -0.0553 70.8202 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0262 REMARK 3 T33: 0.0119 T12: -0.0054 REMARK 3 T13: -0.0308 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2583 L22: 0.0580 REMARK 3 L33: 0.1062 L12: 0.0933 REMARK 3 L13: 0.0216 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.0092 S13: -0.0047 REMARK 3 S21: 0.0069 S22: -0.0085 S23: -0.0008 REMARK 3 S31: 0.0126 S32: -0.0077 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 240 REMARK 3 ORIGIN FOR THE GROUP (A): 99.7371 18.0910 94.2106 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0287 REMARK 3 T33: 0.0093 T12: -0.0044 REMARK 3 T13: -0.0279 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1152 L22: 0.1047 REMARK 3 L33: 0.2200 L12: 0.0078 REMARK 3 L13: 0.0668 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0117 S13: 0.0054 REMARK 3 S21: 0.0141 S22: -0.0032 S23: -0.0001 REMARK 3 S31: 0.0196 S32: -0.0142 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 112.5733 18.1754 41.4483 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.0319 REMARK 3 T33: 0.0083 T12: -0.0027 REMARK 3 T13: -0.0274 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1418 L22: 0.1196 REMARK 3 L33: 0.3023 L12: -0.0205 REMARK 3 L13: 0.1079 L23: -0.0224 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0239 S13: 0.0053 REMARK 3 S21: -0.0097 S22: -0.0040 S23: 0.0015 REMARK 3 S31: 0.0165 S32: 0.0141 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 240 REMARK 3 ORIGIN FOR THE GROUP (A): 126.7526 42.4399 63.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0320 REMARK 3 T33: 0.0110 T12: -0.0063 REMARK 3 T13: -0.0299 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1354 L22: 0.3352 REMARK 3 L33: 0.1152 L12: 0.1171 REMARK 3 L13: 0.0851 L23: 0.0851 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0054 S13: 0.0160 REMARK 3 S21: -0.0132 S22: 0.0016 S23: 0.0202 REMARK 3 S31: -0.0105 S32: 0.0048 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 240 REMARK 3 ORIGIN FOR THE GROUP (A): 85.4524 42.1113 72.1173 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0313 REMARK 3 T33: 0.0125 T12: 0.0000 REMARK 3 T13: -0.0287 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1309 L22: 0.3756 REMARK 3 L33: 0.1025 L12: -0.0796 REMARK 3 L13: 0.0705 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0057 S13: 0.0181 REMARK 3 S21: 0.0104 S22: -0.0113 S23: -0.0124 REMARK 3 S31: -0.0024 S32: -0.0032 S33: 0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4A7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BND REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.56800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.81350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.56800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.81350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ALA B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 174 REMARK 465 ASN B 175 REMARK 465 LYS B 176 REMARK 465 PHE B 177 REMARK 465 LYS B 178 REMARK 465 ASP B 179 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 ALA C 3 REMARK 465 LYS C 4 REMARK 465 ILE C 5 REMARK 465 LYS C 6 REMARK 465 MET D 1 REMARK 465 GLN D 2 REMARK 465 ALA D 3 REMARK 465 LYS D 4 REMARK 465 ILE D 5 REMARK 465 LYS D 6 REMARK 465 PRO D 174 REMARK 465 ASN D 175 REMARK 465 LYS D 176 REMARK 465 PHE D 177 REMARK 465 LYS D 178 REMARK 465 ASP D 179 REMARK 465 MET E 1 REMARK 465 GLN E 2 REMARK 465 ALA E 3 REMARK 465 LYS E 4 REMARK 465 ILE E 5 REMARK 465 LYS E 6 REMARK 465 PRO E 174 REMARK 465 ASN E 175 REMARK 465 LYS E 176 REMARK 465 PHE E 177 REMARK 465 LYS E 178 REMARK 465 ASP E 179 REMARK 465 ALA E 180 REMARK 465 MET F 1 REMARK 465 GLN F 2 REMARK 465 ALA F 3 REMARK 465 LYS F 4 REMARK 465 ILE F 5 REMARK 465 LYS F 6 REMARK 465 PRO F 174 REMARK 465 ASN F 175 REMARK 465 LYS F 176 REMARK 465 PHE F 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 PHE A 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS C 178 CG CD CE NZ REMARK 470 LYS D 172 CG CD CE NZ REMARK 470 LYS D 181 CG CD CE NZ REMARK 470 LYS E 181 CG CD CE NZ REMARK 470 LYS F 172 CG CD CE NZ REMARK 470 ASP F 173 CG OD1 OD2 REMARK 470 LYS F 178 CG CD CE NZ REMARK 470 ASP F 179 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 174 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 167 -35.74 -36.31 REMARK 500 VAL A 198 -63.18 -124.54 REMARK 500 PHE B 141 -10.03 78.95 REMARK 500 GLN B 233 -156.22 -127.09 REMARK 500 PHE C 141 2.62 82.20 REMARK 500 LYS C 176 -76.81 -104.69 REMARK 500 LYS C 178 -7.24 69.17 REMARK 500 GLN C 233 -149.51 -126.23 REMARK 500 ASP D 195 56.74 -91.44 REMARK 500 VAL D 198 -81.94 -122.94 REMARK 500 GLN D 233 -154.77 -134.97 REMARK 500 PHE E 141 -2.84 76.11 REMARK 500 THR E 164 -157.66 -123.89 REMARK 500 PHE E 220 30.39 -96.61 REMARK 500 GLN E 233 -156.35 -134.57 REMARK 500 ILE F 69 -38.17 -131.06 REMARK 500 LYS F 172 156.07 178.67 REMARK 500 VAL F 198 -76.04 -131.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP C 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP D 1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP E 1241 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A7W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF URIDYLATE KINASE FROM HELICOBACTER PYLORI: REMARK 900 INSIGHT INTO THE REGULATION OF THE PRODUCT UDP RELEASE DBREF 4A7X A 1 240 UNP P56106 PYRH_HELPY 1 240 DBREF 4A7X B 1 240 UNP P56106 PYRH_HELPY 1 240 DBREF 4A7X C 1 240 UNP P56106 PYRH_HELPY 1 240 DBREF 4A7X D 1 240 UNP P56106 PYRH_HELPY 1 240 DBREF 4A7X E 1 240 UNP P56106 PYRH_HELPY 1 240 DBREF 4A7X F 1 240 UNP P56106 PYRH_HELPY 1 240 SEQRES 1 A 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 A 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 A 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 A 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 A 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 A 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 A 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 A 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 A 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 A 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 A 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 A 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 A 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 A 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 A 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 A 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 A 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 A 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 A 240 VAL PHE SER MET VAL LYS SEQRES 1 B 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 B 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 B 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 B 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 B 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 B 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 B 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 B 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 B 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 B 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 B 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 B 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 B 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 B 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 B 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 B 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 B 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 B 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 B 240 VAL PHE SER MET VAL LYS SEQRES 1 C 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 C 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 C 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 C 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 C 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 C 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 C 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 C 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 C 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 C 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 C 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 C 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 C 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 C 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 C 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 C 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 C 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 C 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 C 240 VAL PHE SER MET VAL LYS SEQRES 1 D 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 D 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 D 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 D 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 D 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 D 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 D 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 D 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 D 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 D 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 D 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 D 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 D 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 D 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 D 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 D 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 D 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 D 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 D 240 VAL PHE SER MET VAL LYS SEQRES 1 E 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 E 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 E 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 E 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 E 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 E 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 E 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 E 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 E 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 E 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 E 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 E 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 E 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 E 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 E 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 E 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 E 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 E 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 E 240 VAL PHE SER MET VAL LYS SEQRES 1 F 240 MET GLN ALA LYS ILE LYS ASN LYS ARG VAL LEU VAL LYS SEQRES 2 F 240 PHE SER GLY GLU ALA LEU ALA GLY ASP ASN GLN PHE GLY SEQRES 3 F 240 ILE ASP ILE HIS VAL LEU ASP HIS ILE ALA LYS GLU ILE SEQRES 4 F 240 LYS SER LEU VAL GLU ASN ASP ILE GLU VAL GLY ILE VAL SEQRES 5 F 240 ILE GLY GLY GLY ASN ILE ILE ARG GLY VAL SER ALA ALA SEQRES 6 F 240 GLN GLY GLY ILE ILE ARG ARG THR SER GLY ASP TYR MET SEQRES 7 F 240 GLY MET LEU ALA THR VAL ILE ASN ALA VAL ALA MET GLN SEQRES 8 F 240 GLU ALA LEU GLU HIS ILE GLY LEU ASP THR ARG VAL GLN SEQRES 9 F 240 SER ALA ILE GLU ILE LYS GLU ILE CYS GLU SER TYR ILE SEQRES 10 F 240 TYR ARG LYS ALA ILE ARG HIS LEU GLU LYS GLY ARG VAL SEQRES 11 F 240 VAL ILE PHE GLY ALA GLY THR GLY ASN PRO PHE PHE THR SEQRES 12 F 240 THR ASP THR ALA ALA THR LEU ARG ALA ILE GLU ILE GLY SEQRES 13 F 240 SER ASP LEU ILE ILE LYS ALA THR LYS VAL ASP GLY ILE SEQRES 14 F 240 TYR ASP LYS ASP PRO ASN LYS PHE LYS ASP ALA LYS LYS SEQRES 15 F 240 LEU ASP THR LEU SER TYR ASN ASP ALA LEU ILE GLY ASP SEQRES 16 F 240 ILE GLU VAL MET ASP ASP THR ALA ILE SER LEU ALA LYS SEQRES 17 F 240 ASP ASN LYS LEU PRO ILE VAL VAL CYS ASN MET PHE LYS SEQRES 18 F 240 LYS GLY ASN LEU LEU GLN VAL ILE LYS HIS GLN GLN GLY SEQRES 19 F 240 VAL PHE SER MET VAL LYS HET UDP B1241 25 HET UDP C1241 25 HET UDP D1241 25 HET UDP E1241 25 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 7 UDP 4(C9 H14 N2 O12 P2) FORMUL 11 HOH *393(H2 O) HELIX 1 1 GLY A 16 ALA A 20 5 5 HELIX 2 2 ASP A 28 ASN A 45 1 18 HELIX 3 3 ARG A 60 ALA A 65 1 6 HELIX 4 4 ARG A 71 ILE A 97 1 27 HELIX 5 5 ILE A 117 LYS A 127 1 11 HELIX 6 6 THR A 143 ILE A 155 1 13 HELIX 7 7 SER A 187 GLY A 194 1 8 HELIX 8 8 ASP A 200 ASN A 210 1 11 HELIX 9 9 GLY A 223 GLN A 232 1 10 HELIX 10 10 SER B 15 GLY B 21 5 7 HELIX 11 11 ASP B 28 GLU B 44 1 17 HELIX 12 12 ARG B 60 GLN B 66 1 7 HELIX 13 13 ARG B 71 ILE B 97 1 27 HELIX 14 14 ILE B 117 LYS B 127 1 11 HELIX 15 15 THR B 143 ILE B 155 1 13 HELIX 16 16 SER B 187 GLY B 194 1 8 HELIX 17 17 ASP B 200 ASN B 210 1 11 HELIX 18 18 GLY B 223 GLN B 232 1 10 HELIX 19 19 GLY C 16 ALA C 20 5 5 HELIX 20 20 ASP C 28 GLU C 44 1 17 HELIX 21 21 ARG C 60 GLN C 66 1 7 HELIX 22 22 ARG C 71 ILE C 97 1 27 HELIX 23 23 ILE C 117 LYS C 127 1 11 HELIX 24 24 THR C 143 ILE C 155 1 13 HELIX 25 25 SER C 187 GLY C 194 1 8 HELIX 26 26 ASP C 200 ASN C 210 1 11 HELIX 27 27 GLY C 223 GLN C 232 1 10 HELIX 28 28 GLY D 16 ALA D 20 5 5 HELIX 29 29 ASP D 28 ASN D 45 1 18 HELIX 30 30 ARG D 60 GLN D 66 1 7 HELIX 31 31 ARG D 71 ILE D 97 1 27 HELIX 32 32 ILE D 117 LYS D 127 1 11 HELIX 33 33 THR D 143 ILE D 155 1 13 HELIX 34 34 SER D 187 GLY D 194 1 8 HELIX 35 35 ASP D 200 ASN D 210 1 11 HELIX 36 36 GLY D 223 LYS D 230 1 8 HELIX 37 37 GLY E 16 ALA E 20 5 5 HELIX 38 38 ASP E 28 GLU E 44 1 17 HELIX 39 39 ARG E 60 GLN E 66 1 7 HELIX 40 40 ARG E 71 HIS E 96 1 26 HELIX 41 41 ILE E 117 LYS E 127 1 11 HELIX 42 42 THR E 143 ILE E 155 1 13 HELIX 43 43 SER E 187 GLY E 194 1 8 HELIX 44 44 ASP E 200 ASN E 210 1 11 HELIX 45 45 GLY E 223 GLN E 232 1 10 HELIX 46 46 GLY F 16 ALA F 20 5 5 HELIX 47 47 ASP F 28 GLU F 44 1 17 HELIX 48 48 ARG F 71 ILE F 97 1 27 HELIX 49 49 ILE F 117 LYS F 127 1 11 HELIX 50 50 THR F 143 ILE F 155 1 13 HELIX 51 51 SER F 187 GLY F 194 1 8 HELIX 52 52 ASP F 200 ASN F 210 1 11 HELIX 53 53 GLY F 223 GLN F 232 1 10 SHEET 1 AA 9 GLU A 114 SER A 115 0 SHEET 2 AA 9 THR A 101 SER A 105 1 O VAL A 103 N GLU A 114 SHEET 3 AA 9 VAL A 130 GLY A 134 1 O VAL A 130 N ARG A 102 SHEET 4 AA 9 GLU A 48 ILE A 53 1 O VAL A 49 N VAL A 131 SHEET 5 AA 9 ARG A 9 PHE A 14 1 O VAL A 10 N GLY A 50 SHEET 6 AA 9 LEU A 159 THR A 164 1 O LEU A 159 N LEU A 11 SHEET 7 AA 9 ILE A 214 ASN A 218 1 O VAL A 215 N LYS A 162 SHEET 8 AA 9 SER A 237 VAL A 239 -1 O SER A 237 N VAL A 216 SHEET 9 AA 9 THR A 185 LEU A 186 1 N LEU A 186 O MET A 238 SHEET 1 AB 2 ILE A 169 TYR A 170 0 SHEET 2 AB 2 LYS A 182 LEU A 183 -1 O LEU A 183 N ILE A 169 SHEET 1 BA 9 GLU B 114 SER B 115 0 SHEET 2 BA 9 THR B 101 SER B 105 1 O VAL B 103 N GLU B 114 SHEET 3 BA 9 VAL B 130 GLY B 134 1 O VAL B 130 N ARG B 102 SHEET 4 BA 9 GLU B 48 ILE B 53 1 O VAL B 49 N VAL B 131 SHEET 5 BA 9 ARG B 9 PHE B 14 1 O VAL B 10 N GLY B 50 SHEET 6 BA 9 LEU B 159 THR B 164 1 O LEU B 159 N LEU B 11 SHEET 7 BA 9 ILE B 214 ASN B 218 1 O VAL B 215 N LYS B 162 SHEET 8 BA 9 SER B 237 VAL B 239 -1 O SER B 237 N VAL B 216 SHEET 9 BA 9 THR B 185 LEU B 186 1 N LEU B 186 O MET B 238 SHEET 1 BB 2 ILE B 169 TYR B 170 0 SHEET 2 BB 2 LYS B 182 LEU B 183 -1 O LEU B 183 N ILE B 169 SHEET 1 CA 9 GLU C 114 SER C 115 0 SHEET 2 CA 9 THR C 101 SER C 105 1 O VAL C 103 N GLU C 114 SHEET 3 CA 9 VAL C 130 GLY C 134 1 O VAL C 130 N ARG C 102 SHEET 4 CA 9 GLU C 48 ILE C 53 1 O VAL C 49 N VAL C 131 SHEET 5 CA 9 ARG C 9 PHE C 14 1 O VAL C 10 N GLY C 50 SHEET 6 CA 9 LEU C 159 THR C 164 1 O LEU C 159 N LEU C 11 SHEET 7 CA 9 ILE C 214 ASN C 218 1 O VAL C 215 N LYS C 162 SHEET 8 CA 9 SER C 237 VAL C 239 -1 O SER C 237 N VAL C 216 SHEET 9 CA 9 THR C 185 LEU C 186 1 N LEU C 186 O MET C 238 SHEET 1 CB 2 ILE C 169 TYR C 170 0 SHEET 2 CB 2 LYS C 182 LEU C 183 -1 O LEU C 183 N ILE C 169 SHEET 1 DA 9 GLU D 114 SER D 115 0 SHEET 2 DA 9 THR D 101 SER D 105 1 O VAL D 103 N GLU D 114 SHEET 3 DA 9 VAL D 130 GLY D 134 1 O VAL D 130 N ARG D 102 SHEET 4 DA 9 GLU D 48 ILE D 53 1 O VAL D 49 N VAL D 131 SHEET 5 DA 9 ARG D 9 PHE D 14 1 O VAL D 10 N GLY D 50 SHEET 6 DA 9 LEU D 159 THR D 164 1 O LEU D 159 N LEU D 11 SHEET 7 DA 9 ILE D 214 ASN D 218 1 O VAL D 215 N LYS D 162 SHEET 8 DA 9 SER D 237 VAL D 239 -1 O SER D 237 N VAL D 216 SHEET 9 DA 9 THR D 185 LEU D 186 1 N LEU D 186 O MET D 238 SHEET 1 DB 2 ILE D 169 TYR D 170 0 SHEET 2 DB 2 LYS D 182 LEU D 183 -1 O LEU D 183 N ILE D 169 SHEET 1 EA 9 GLU E 114 SER E 115 0 SHEET 2 EA 9 THR E 101 SER E 105 1 O VAL E 103 N GLU E 114 SHEET 3 EA 9 VAL E 130 GLY E 134 1 O VAL E 130 N ARG E 102 SHEET 4 EA 9 GLU E 48 ILE E 53 1 O VAL E 49 N VAL E 131 SHEET 5 EA 9 ARG E 9 PHE E 14 1 O VAL E 10 N GLY E 50 SHEET 6 EA 9 LEU E 159 THR E 164 1 O LEU E 159 N LEU E 11 SHEET 7 EA 9 ILE E 214 ASN E 218 1 O VAL E 215 N LYS E 162 SHEET 8 EA 9 SER E 237 VAL E 239 -1 O SER E 237 N VAL E 216 SHEET 9 EA 9 THR E 185 LEU E 186 1 N LEU E 186 O MET E 238 SHEET 1 EB 2 ILE E 169 TYR E 170 0 SHEET 2 EB 2 LYS E 182 LEU E 183 -1 O LEU E 183 N ILE E 169 SHEET 1 FA 9 GLU F 114 SER F 115 0 SHEET 2 FA 9 THR F 101 SER F 105 1 O VAL F 103 N GLU F 114 SHEET 3 FA 9 VAL F 130 GLY F 134 1 O VAL F 130 N ARG F 102 SHEET 4 FA 9 ILE F 47 ILE F 53 1 O VAL F 49 N VAL F 131 SHEET 5 FA 9 LYS F 8 PHE F 14 1 O LYS F 8 N GLU F 48 SHEET 6 FA 9 LEU F 159 THR F 164 1 O LEU F 159 N LEU F 11 SHEET 7 FA 9 ILE F 214 ASN F 218 1 O VAL F 215 N LYS F 162 SHEET 8 FA 9 SER F 237 VAL F 239 -1 O SER F 237 N VAL F 216 SHEET 9 FA 9 THR F 185 LEU F 186 1 N LEU F 186 O MET F 238 SHEET 1 FB 2 ILE F 169 TYR F 170 0 SHEET 2 FB 2 LYS F 182 LEU F 183 -1 O LEU F 183 N ILE F 169 SITE 1 AC1 17 LYS B 13 GLY B 16 GLU B 17 GLY B 54 SITE 2 AC1 17 GLY B 55 GLY B 56 ARG B 60 GLY B 61 SITE 3 AC1 17 ASP B 76 GLY B 79 THR B 137 ASN B 139 SITE 4 AC1 17 PRO B 140 PHE B 142 THR B 144 HOH B2024 SITE 5 AC1 17 HOH B2050 SITE 1 AC2 19 LYS C 13 SER C 15 GLY C 16 GLY C 55 SITE 2 AC2 19 GLY C 56 ARG C 60 GLY C 61 ASP C 76 SITE 3 AC2 19 GLY C 79 MET C 80 GLY C 136 THR C 137 SITE 4 AC2 19 ASN C 139 PRO C 140 PHE C 142 THR C 144 SITE 5 AC2 19 HOH C2023 HOH C2070 HOH C2071 SITE 1 AC3 18 SER D 15 GLY D 16 GLU D 17 GLY D 54 SITE 2 AC3 18 GLY D 55 GLY D 56 ARG D 60 GLY D 61 SITE 3 AC3 18 ASP D 76 GLY D 79 MET D 80 GLY D 136 SITE 4 AC3 18 THR D 137 ASN D 139 PRO D 140 PHE D 142 SITE 5 AC3 18 THR D 144 HOH D2004 SITE 1 AC4 23 SER E 15 GLY E 16 GLU E 17 GLY E 54 SITE 2 AC4 23 GLY E 55 GLY E 56 ILE E 59 ARG E 60 SITE 3 AC4 23 GLY E 61 ASP E 76 GLY E 79 MET E 80 SITE 4 AC4 23 THR E 83 GLY E 136 THR E 137 ASN E 139 SITE 5 AC4 23 PRO E 140 PHE E 141 PHE E 142 THR E 144 SITE 6 AC4 23 HOH E2001 HOH E2010 HOH E2029 CRYST1 147.136 127.627 93.181 90.00 91.46 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006796 0.000000 0.000173 0.00000 SCALE2 0.000000 0.007835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010735 0.00000