data_4A88 # _entry.id 4A88 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A88 PDBE EBI-50367 WWPDB D_1290050367 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1FSK unspecified 'COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONALIGG ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V1' PDB 4A8G unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN COMPLEX WITH DIMETHYLBENZYLAMMONIUM PROPANE SULFONATE' PDB 4A84 unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A F30V MUTANT IN COMPLEX WITH DEOXYCHOLATE.' PDB 1B6F unspecified 'BIRCH POLLEN ALLERGEN BET V 1' PDB 4A80 unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN COMPLEX WITH 8-ANILINONAPHTHALENE-1-SULFONATE (ANS)' PDB 1BV1 unspecified 'BIRCH POLLEN ALLERGEN BET V 1' PDB 4A85 unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN COMPLEX WITH KINETIN.' PDB 1LLT unspecified 'BIRCH POLLEN ALLERGEN BET V 1 MUTANT E45S' PDB 1QMR unspecified 'BIRCH POLLEN ALLERGEN BET V 1 MUTANT N28T, K32Q, E45S, P108G' PDB 4A81 unspecified ;CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN TERNARY COMPLEX WITH 8-ANILINONAPHTHALENE-1- SULFONATE (ANS) AND DEOXYCHOLIC ACID ; PDB 4A86 unspecified ;CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN TERNARY COMPLEX WITH KINETIN AND 8- ANILINONAPHTHALENE-1-SULFONATE (ANS) ; PDB 4A83 unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN COMPLEX WITH DEOXYCHOLATE.' PDB 1BTV unspecified 'STRUCTURE OF BET V 1, NMR, 20 STRUCTURES' PDB 4A87 unspecified 'CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN COMPLEX WITH NARINGENIN.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A88 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-11-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kofler, S.' 1 'Brandstetter, H.' 2 # _citation.id primary _citation.title 'Crystallographically Mapped Ligand Binding Differs in High and Low Ige Binding Isoforms of Birch Pollen Allergen Bet V 1.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 422 _citation.page_first 109 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22634284 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2012.05.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kofler, S.' 1 primary 'Asam, C.' 2 primary 'Eckhard, U.' 3 primary 'Wallner, M.' 4 primary 'Ferreira, F.' 5 primary 'Brandstetter, H.' 6 # _cell.entry_id 4A88 _cell.length_a 32.610 _cell.length_b 55.400 _cell.length_c 37.890 _cell.angle_alpha 90.00 _cell.angle_beta 93.05 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A88 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MAJOR POLLEN ALLERGEN BET V 1-A' 17461.594 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 7 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 4 water nat water 18.015 215 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BET V 1 A, ALLERGEN BET V I-A, BET V 1-A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFK YNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN ; _entity_poly.pdbx_seq_one_letter_code_can ;GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFK YNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 PHE n 1 4 ASN n 1 5 TYR n 1 6 GLU n 1 7 THR n 1 8 GLU n 1 9 THR n 1 10 THR n 1 11 SER n 1 12 VAL n 1 13 ILE n 1 14 PRO n 1 15 ALA n 1 16 ALA n 1 17 ARG n 1 18 LEU n 1 19 PHE n 1 20 LYS n 1 21 ALA n 1 22 PHE n 1 23 ILE n 1 24 LEU n 1 25 ASP n 1 26 GLY n 1 27 ASP n 1 28 ASN n 1 29 LEU n 1 30 PHE n 1 31 PRO n 1 32 LYS n 1 33 VAL n 1 34 ALA n 1 35 PRO n 1 36 GLN n 1 37 ALA n 1 38 ILE n 1 39 SER n 1 40 SER n 1 41 VAL n 1 42 GLU n 1 43 ASN n 1 44 ILE n 1 45 GLU n 1 46 GLY n 1 47 ASN n 1 48 GLY n 1 49 GLY n 1 50 PRO n 1 51 GLY n 1 52 THR n 1 53 ILE n 1 54 LYS n 1 55 LYS n 1 56 ILE n 1 57 SER n 1 58 PHE n 1 59 PRO n 1 60 GLU n 1 61 GLY n 1 62 PHE n 1 63 PRO n 1 64 PHE n 1 65 LYS n 1 66 TYR n 1 67 VAL n 1 68 LYS n 1 69 ASP n 1 70 ARG n 1 71 VAL n 1 72 ASP n 1 73 GLU n 1 74 VAL n 1 75 ASP n 1 76 HIS n 1 77 THR n 1 78 ASN n 1 79 PHE n 1 80 LYS n 1 81 TYR n 1 82 ASN n 1 83 TYR n 1 84 SER n 1 85 VAL n 1 86 ILE n 1 87 GLU n 1 88 GLY n 1 89 GLY n 1 90 PRO n 1 91 ILE n 1 92 GLY n 1 93 ASP n 1 94 THR n 1 95 LEU n 1 96 GLU n 1 97 LYS n 1 98 ILE n 1 99 SER n 1 100 ASN n 1 101 GLU n 1 102 ILE n 1 103 LYS n 1 104 ILE n 1 105 VAL n 1 106 ALA n 1 107 THR n 1 108 PRO n 1 109 ASP n 1 110 GLY n 1 111 GLY n 1 112 SER n 1 113 ILE n 1 114 LEU n 1 115 LYS n 1 116 ILE n 1 117 SER n 1 118 ASN n 1 119 LYS n 1 120 TYR n 1 121 HIS n 1 122 THR n 1 123 LYS n 1 124 GLY n 1 125 ASP n 1 126 HIS n 1 127 GLU n 1 128 VAL n 1 129 LYS n 1 130 ALA n 1 131 GLU n 1 132 GLN n 1 133 VAL n 1 134 LYS n 1 135 ALA n 1 136 SER n 1 137 LYS n 1 138 GLU n 1 139 MET n 1 140 GLY n 1 141 GLU n 1 142 THR n 1 143 LEU n 1 144 LEU n 1 145 ARG n 1 146 ALA n 1 147 VAL n 1 148 GLU n 1 149 SER n 1 150 TYR n 1 151 LEU n 1 152 LEU n 1 153 ALA n 1 154 HIS n 1 155 SER n 1 156 ASP n 1 157 ALA n 1 158 TYR n 1 159 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'EUROPEAN WHITE BIRCH' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BETULA PENDULA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3505 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET-28B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BEV1A_BETPN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P15494 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4A88 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15494 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A88 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_percent_sol 37.06 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-08-11 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.91841 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A88 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37.84 _reflns.d_resolution_high 1.51 _reflns.number_obs 20772 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.51 _reflns_shell.d_res_low 1.59 _reflns_shell.percent_possible_all 85.6 _reflns_shell.Rmerge_I_obs 0.13 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.60 _reflns_shell.pdbx_redundancy 2.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A88 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19696 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.84 _refine.ls_d_res_high 1.51 _refine.ls_percent_reflns_obs 97.80 _refine.ls_R_factor_obs 0.11407 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.11120 _refine.ls_R_factor_R_free 0.16792 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1059 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 13.695 _refine.aniso_B[1][1] -0.11 _refine.aniso_B[2][2] 0.31 _refine.aniso_B[3][3] -0.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.20 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model 'PDB ENTRY 4A80' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.584 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1229 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 215 _refine_hist.number_atoms_total 1495 _refine_hist.d_res_high 1.51 _refine_hist.d_res_low 37.84 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.020 ? 1401 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 929 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.453 2.003 ? 1930 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.908 3.000 ? 2315 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.818 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.659 26.032 ? 63 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.229 15.000 ? 245 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 30.571 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 221 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1559 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 256 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.687 3.000 ? 2330 'X-RAY DIFFRACTION' ? r_sphericity_free 37.637 5.000 ? 67 'X-RAY DIFFRACTION' ? r_sphericity_bonded 11.415 5.000 ? 2443 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.510 _refine_ls_shell.d_res_low 1.549 _refine_ls_shell.number_reflns_R_work 1166 _refine_ls_shell.R_factor_R_work 0.135 _refine_ls_shell.percent_reflns_obs 80.86 _refine_ls_shell.R_factor_R_free 0.214 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4A88 _struct.title 'Crystal Structure of native Major Birch Pollen Allergen Bet v 1 isoform a' _struct.pdbx_descriptor 'MAJOR POLLEN ALLERGEN BET V 1-A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A88 _struct_keywords.pdbx_keywords ALLERGEN _struct_keywords.text 'ALLERGEN, PR-10 PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 14 ? ILE A 23 ? PRO A 14 ILE A 23 1 ? 10 HELX_P HELX_P2 2 ASP A 25 ? ALA A 34 ? ASP A 25 ALA A 34 1 ? 10 HELX_P HELX_P3 3 LYS A 129 ? HIS A 154 ? LYS A 129 HIS A 154 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 124 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 125 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.42 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 2 ? SER A 11 ? VAL A 2 SER A 11 AA 2 SER A 112 ? THR A 122 ? SER A 112 THR A 122 AA 3 LEU A 95 ? ALA A 106 ? LEU A 95 ALA A 106 AA 4 LYS A 80 ? GLY A 88 ? LYS A 80 GLY A 88 AA 5 TYR A 66 ? ASP A 75 ? TYR A 66 ASP A 75 AA 6 ILE A 53 ? SER A 57 ? ILE A 53 SER A 57 AA 7 SER A 40 ? GLU A 45 ? SER A 40 GLU A 45 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 11 ? N SER A 11 O SER A 112 ? O SER A 112 AA 2 3 O HIS A 121 ? O HIS A 121 N GLU A 96 ? N GLU A 96 AA 3 4 N ILE A 102 ? N ILE A 102 O TYR A 81 ? O TYR A 81 AA 4 5 N ILE A 86 ? N ILE A 86 O LYS A 68 ? O LYS A 68 AA 5 6 N ASP A 69 ? N ASP A 69 O LYS A 54 ? O LYS A 54 AA 6 7 N SER A 57 ? N SER A 57 O SER A 40 ? O SER A 40 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1160' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1161' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1162' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 1163' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1164' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1165' AC7 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 1166' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MPD A 1167' AC9 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE MPD A 1168' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 7 ? THR A 7 . ? 1_655 ? 2 AC1 5 GLU A 8 ? GLU A 8 . ? 1_655 ? 3 AC1 5 LYS A 32 ? LYS A 32 . ? 1_555 ? 4 AC1 5 TYR A 150 ? TYR A 150 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 2014 . ? 1_655 ? 6 AC2 5 ARG A 70 ? ARG A 70 . ? 1_555 ? 7 AC2 5 LYS A 97 ? LYS A 97 . ? 1_555 ? 8 AC2 5 HOH K . ? HOH A 2208 . ? 1_555 ? 9 AC2 5 HOH K . ? HOH A 2209 . ? 1_555 ? 10 AC2 5 HOH K . ? HOH A 2210 . ? 1_555 ? 11 AC3 4 GLY A 1 ? GLY A 1 . ? 1_555 ? 12 AC3 4 VAL A 2 ? VAL A 2 . ? 1_555 ? 13 AC3 4 HIS A 121 ? HIS A 121 . ? 1_555 ? 14 AC3 4 THR A 122 ? THR A 122 . ? 1_555 ? 15 AC4 2 ASP A 75 ? ASP A 75 . ? 1_555 ? 16 AC4 2 THR A 77 ? THR A 77 . ? 1_555 ? 17 AC5 5 LYS A 54 ? LYS A 54 . ? 1_555 ? 18 AC5 5 ASP A 69 ? ASP A 69 . ? 1_555 ? 19 AC5 5 TYR A 81 ? TYR A 81 . ? 1_555 ? 20 AC5 5 HOH K . ? HOH A 2036 . ? 1_555 ? 21 AC5 5 HOH K . ? HOH A 2037 . ? 1_555 ? 22 AC6 4 THR A 9 ? THR A 9 . ? 1_555 ? 23 AC6 4 THR A 10 ? THR A 10 . ? 1_555 ? 24 AC6 4 ARG A 145 ? ARG A 145 . ? 1_555 ? 25 AC6 4 HOH K . ? HOH A 2013 . ? 1_555 ? 26 AC7 7 SER A 39 ? SER A 39 . ? 1_555 ? 27 AC7 7 PRO A 59 ? PRO A 59 . ? 1_555 ? 28 AC7 7 GLU A 60 ? GLU A 60 . ? 1_555 ? 29 AC7 7 HOH K . ? HOH A 2054 . ? 1_555 ? 30 AC7 7 HOH K . ? HOH A 2061 . ? 1_555 ? 31 AC7 7 HOH K . ? HOH A 2100 . ? 1_555 ? 32 AC7 7 HOH K . ? HOH A 2214 . ? 1_555 ? 33 AC8 4 ASP A 69 ? ASP A 69 . ? 1_555 ? 34 AC8 4 TYR A 83 ? TYR A 83 . ? 1_555 ? 35 AC8 4 MPD J . ? MPD A 1168 . ? 1_555 ? 36 AC8 4 HOH K . ? HOH A 2152 . ? 1_555 ? 37 AC9 9 PHE A 58 ? PHE A 58 . ? 1_555 ? 38 AC9 9 PHE A 64 ? PHE A 64 . ? 1_555 ? 39 AC9 9 VAL A 67 ? VAL A 67 . ? 1_555 ? 40 AC9 9 PRO A 90 ? PRO A 90 . ? 1_555 ? 41 AC9 9 ALA A 135 ? ALA A 135 . ? 1_555 ? 42 AC9 9 MET A 139 ? MET A 139 . ? 1_555 ? 43 AC9 9 MPD I . ? MPD A 1167 . ? 1_555 ? 44 AC9 9 HOH K . ? HOH A 2182 . ? 1_555 ? 45 AC9 9 HOH K . ? HOH A 2215 . ? 1_555 ? # _database_PDB_matrix.entry_id 4A88 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A88 _atom_sites.fract_transf_matrix[1][1] 0.030665 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001634 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018051 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026430 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 GLN 132 132 132 GLN GLN A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 MET 139 139 139 MET MET A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 GLU 148 148 148 GLU GLU A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 ASN 159 159 159 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1160 1160 SO4 SO4 A . C 2 SO4 1 1161 1161 SO4 SO4 A . D 2 SO4 1 1162 1162 SO4 SO4 A . E 2 SO4 1 1163 1163 SO4 SO4 A . F 2 SO4 1 1164 1164 SO4 SO4 A . G 2 SO4 1 1165 1165 SO4 SO4 A . H 2 SO4 1 1166 1166 SO4 SO4 A . I 3 MPD 1 1167 1167 MPD MPD A . J 3 MPD 1 1168 1168 MPD MPD A . K 4 HOH 1 2001 2001 HOH HOH A . K 4 HOH 2 2002 2002 HOH HOH A . K 4 HOH 3 2003 2003 HOH HOH A . K 4 HOH 4 2004 2004 HOH HOH A . K 4 HOH 5 2005 2005 HOH HOH A . K 4 HOH 6 2006 2006 HOH HOH A . K 4 HOH 7 2007 2007 HOH HOH A . K 4 HOH 8 2008 2008 HOH HOH A . K 4 HOH 9 2009 2009 HOH HOH A . K 4 HOH 10 2010 2010 HOH HOH A . K 4 HOH 11 2011 2011 HOH HOH A . K 4 HOH 12 2012 2012 HOH HOH A . K 4 HOH 13 2013 2013 HOH HOH A . K 4 HOH 14 2014 2014 HOH HOH A . K 4 HOH 15 2015 2015 HOH HOH A . K 4 HOH 16 2016 2016 HOH HOH A . K 4 HOH 17 2017 2017 HOH HOH A . K 4 HOH 18 2018 2018 HOH HOH A . K 4 HOH 19 2019 2019 HOH HOH A . K 4 HOH 20 2020 2020 HOH HOH A . K 4 HOH 21 2021 2021 HOH HOH A . K 4 HOH 22 2022 2022 HOH HOH A . K 4 HOH 23 2023 2023 HOH HOH A . K 4 HOH 24 2024 2024 HOH HOH A . K 4 HOH 25 2025 2025 HOH HOH A . K 4 HOH 26 2026 2026 HOH HOH A . K 4 HOH 27 2027 2027 HOH HOH A . K 4 HOH 28 2028 2028 HOH HOH A . K 4 HOH 29 2029 2029 HOH HOH A . K 4 HOH 30 2030 2030 HOH HOH A . K 4 HOH 31 2031 2031 HOH HOH A . K 4 HOH 32 2032 2032 HOH HOH A . K 4 HOH 33 2033 2033 HOH HOH A . K 4 HOH 34 2034 2034 HOH HOH A . K 4 HOH 35 2035 2035 HOH HOH A . K 4 HOH 36 2036 2036 HOH HOH A . K 4 HOH 37 2037 2037 HOH HOH A . K 4 HOH 38 2038 2038 HOH HOH A . K 4 HOH 39 2039 2039 HOH HOH A . K 4 HOH 40 2040 2040 HOH HOH A . K 4 HOH 41 2041 2041 HOH HOH A . K 4 HOH 42 2042 2042 HOH HOH A . K 4 HOH 43 2043 2043 HOH HOH A . K 4 HOH 44 2044 2044 HOH HOH A . K 4 HOH 45 2045 2045 HOH HOH A . K 4 HOH 46 2046 2046 HOH HOH A . K 4 HOH 47 2047 2047 HOH HOH A . K 4 HOH 48 2048 2048 HOH HOH A . K 4 HOH 49 2049 2049 HOH HOH A . K 4 HOH 50 2050 2050 HOH HOH A . K 4 HOH 51 2051 2051 HOH HOH A . K 4 HOH 52 2052 2052 HOH HOH A . K 4 HOH 53 2053 2053 HOH HOH A . K 4 HOH 54 2054 2054 HOH HOH A . K 4 HOH 55 2055 2055 HOH HOH A . K 4 HOH 56 2056 2056 HOH HOH A . K 4 HOH 57 2057 2057 HOH HOH A . K 4 HOH 58 2058 2058 HOH HOH A . K 4 HOH 59 2059 2059 HOH HOH A . K 4 HOH 60 2060 2060 HOH HOH A . K 4 HOH 61 2061 2061 HOH HOH A . K 4 HOH 62 2062 2062 HOH HOH A . K 4 HOH 63 2063 2063 HOH HOH A . K 4 HOH 64 2064 2064 HOH HOH A . K 4 HOH 65 2065 2065 HOH HOH A . K 4 HOH 66 2066 2066 HOH HOH A . K 4 HOH 67 2067 2067 HOH HOH A . K 4 HOH 68 2068 2068 HOH HOH A . K 4 HOH 69 2069 2069 HOH HOH A . K 4 HOH 70 2070 2070 HOH HOH A . K 4 HOH 71 2071 2071 HOH HOH A . K 4 HOH 72 2072 2072 HOH HOH A . K 4 HOH 73 2073 2073 HOH HOH A . K 4 HOH 74 2074 2074 HOH HOH A . K 4 HOH 75 2075 2075 HOH HOH A . K 4 HOH 76 2076 2076 HOH HOH A . K 4 HOH 77 2077 2077 HOH HOH A . K 4 HOH 78 2078 2078 HOH HOH A . K 4 HOH 79 2079 2079 HOH HOH A . K 4 HOH 80 2080 2080 HOH HOH A . K 4 HOH 81 2081 2081 HOH HOH A . K 4 HOH 82 2082 2082 HOH HOH A . K 4 HOH 83 2083 2083 HOH HOH A . K 4 HOH 84 2084 2084 HOH HOH A . K 4 HOH 85 2085 2085 HOH HOH A . K 4 HOH 86 2086 2086 HOH HOH A . K 4 HOH 87 2087 2087 HOH HOH A . K 4 HOH 88 2088 2088 HOH HOH A . K 4 HOH 89 2089 2089 HOH HOH A . K 4 HOH 90 2090 2090 HOH HOH A . K 4 HOH 91 2091 2091 HOH HOH A . K 4 HOH 92 2092 2092 HOH HOH A . K 4 HOH 93 2093 2093 HOH HOH A . K 4 HOH 94 2094 2094 HOH HOH A . K 4 HOH 95 2095 2095 HOH HOH A . K 4 HOH 96 2096 2096 HOH HOH A . K 4 HOH 97 2097 2097 HOH HOH A . K 4 HOH 98 2098 2098 HOH HOH A . K 4 HOH 99 2099 2099 HOH HOH A . K 4 HOH 100 2100 2100 HOH HOH A . K 4 HOH 101 2101 2101 HOH HOH A . K 4 HOH 102 2102 2102 HOH HOH A . K 4 HOH 103 2103 2103 HOH HOH A . K 4 HOH 104 2104 2104 HOH HOH A . K 4 HOH 105 2105 2105 HOH HOH A . K 4 HOH 106 2106 2106 HOH HOH A . K 4 HOH 107 2107 2107 HOH HOH A . K 4 HOH 108 2108 2108 HOH HOH A . K 4 HOH 109 2109 2109 HOH HOH A . K 4 HOH 110 2110 2110 HOH HOH A . K 4 HOH 111 2111 2111 HOH HOH A . K 4 HOH 112 2112 2112 HOH HOH A . K 4 HOH 113 2113 2113 HOH HOH A . K 4 HOH 114 2114 2114 HOH HOH A . K 4 HOH 115 2115 2115 HOH HOH A . K 4 HOH 116 2116 2116 HOH HOH A . K 4 HOH 117 2117 2117 HOH HOH A . K 4 HOH 118 2118 2118 HOH HOH A . K 4 HOH 119 2119 2119 HOH HOH A . K 4 HOH 120 2120 2120 HOH HOH A . K 4 HOH 121 2121 2121 HOH HOH A . K 4 HOH 122 2122 2122 HOH HOH A . K 4 HOH 123 2123 2123 HOH HOH A . K 4 HOH 124 2124 2124 HOH HOH A . K 4 HOH 125 2125 2125 HOH HOH A . K 4 HOH 126 2126 2126 HOH HOH A . K 4 HOH 127 2127 2127 HOH HOH A . K 4 HOH 128 2128 2128 HOH HOH A . K 4 HOH 129 2129 2129 HOH HOH A . K 4 HOH 130 2130 2130 HOH HOH A . K 4 HOH 131 2131 2131 HOH HOH A . K 4 HOH 132 2132 2132 HOH HOH A . K 4 HOH 133 2133 2133 HOH HOH A . K 4 HOH 134 2134 2134 HOH HOH A . K 4 HOH 135 2135 2135 HOH HOH A . K 4 HOH 136 2136 2136 HOH HOH A . K 4 HOH 137 2137 2137 HOH HOH A . K 4 HOH 138 2138 2138 HOH HOH A . K 4 HOH 139 2139 2139 HOH HOH A . K 4 HOH 140 2140 2140 HOH HOH A . K 4 HOH 141 2141 2141 HOH HOH A . K 4 HOH 142 2142 2142 HOH HOH A . K 4 HOH 143 2143 2143 HOH HOH A . K 4 HOH 144 2144 2144 HOH HOH A . K 4 HOH 145 2145 2145 HOH HOH A . K 4 HOH 146 2146 2146 HOH HOH A . K 4 HOH 147 2147 2147 HOH HOH A . K 4 HOH 148 2148 2148 HOH HOH A . K 4 HOH 149 2149 2149 HOH HOH A . K 4 HOH 150 2150 2150 HOH HOH A . K 4 HOH 151 2151 2151 HOH HOH A . K 4 HOH 152 2152 2152 HOH HOH A . K 4 HOH 153 2153 2153 HOH HOH A . K 4 HOH 154 2154 2154 HOH HOH A . K 4 HOH 155 2155 2155 HOH HOH A . K 4 HOH 156 2156 2156 HOH HOH A . K 4 HOH 157 2157 2157 HOH HOH A . K 4 HOH 158 2158 2158 HOH HOH A . K 4 HOH 159 2159 2159 HOH HOH A . K 4 HOH 160 2160 2160 HOH HOH A . K 4 HOH 161 2161 2161 HOH HOH A . K 4 HOH 162 2162 2162 HOH HOH A . K 4 HOH 163 2163 2163 HOH HOH A . K 4 HOH 164 2164 2164 HOH HOH A . K 4 HOH 165 2165 2165 HOH HOH A . K 4 HOH 166 2166 2166 HOH HOH A . K 4 HOH 167 2167 2167 HOH HOH A . K 4 HOH 168 2168 2168 HOH HOH A . K 4 HOH 169 2169 2169 HOH HOH A . K 4 HOH 170 2170 2170 HOH HOH A . K 4 HOH 171 2171 2171 HOH HOH A . K 4 HOH 172 2172 2172 HOH HOH A . K 4 HOH 173 2173 2173 HOH HOH A . K 4 HOH 174 2174 2174 HOH HOH A . K 4 HOH 175 2175 2175 HOH HOH A . K 4 HOH 176 2176 2176 HOH HOH A . K 4 HOH 177 2177 2177 HOH HOH A . K 4 HOH 178 2178 2178 HOH HOH A . K 4 HOH 179 2179 2179 HOH HOH A . K 4 HOH 180 2180 2180 HOH HOH A . K 4 HOH 181 2181 2181 HOH HOH A . K 4 HOH 182 2182 2182 HOH HOH A . K 4 HOH 183 2183 2183 HOH HOH A . K 4 HOH 184 2184 2184 HOH HOH A . K 4 HOH 185 2185 2185 HOH HOH A . K 4 HOH 186 2186 2186 HOH HOH A . K 4 HOH 187 2187 2187 HOH HOH A . K 4 HOH 188 2188 2188 HOH HOH A . K 4 HOH 189 2189 2189 HOH HOH A . K 4 HOH 190 2190 2190 HOH HOH A . K 4 HOH 191 2191 2191 HOH HOH A . K 4 HOH 192 2192 2192 HOH HOH A . K 4 HOH 193 2193 2193 HOH HOH A . K 4 HOH 194 2194 2194 HOH HOH A . K 4 HOH 195 2195 2195 HOH HOH A . K 4 HOH 196 2196 2196 HOH HOH A . K 4 HOH 197 2197 2197 HOH HOH A . K 4 HOH 198 2198 2198 HOH HOH A . K 4 HOH 199 2199 2199 HOH HOH A . K 4 HOH 200 2200 2200 HOH HOH A . K 4 HOH 201 2201 2201 HOH HOH A . K 4 HOH 202 2202 2202 HOH HOH A . K 4 HOH 203 2203 2203 HOH HOH A . K 4 HOH 204 2204 2204 HOH HOH A . K 4 HOH 205 2205 2205 HOH HOH A . K 4 HOH 206 2206 2206 HOH HOH A . K 4 HOH 207 2207 2207 HOH HOH A . K 4 HOH 208 2208 2208 HOH HOH A . K 4 HOH 209 2209 2209 HOH HOH A . K 4 HOH 210 2210 2210 HOH HOH A . K 4 HOH 211 2211 2211 HOH HOH A . K 4 HOH 212 2212 2212 HOH HOH A . K 4 HOH 213 2213 2213 HOH HOH A . K 4 HOH 214 2214 2214 HOH HOH A . K 4 HOH 215 2215 2215 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2012-08-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 iMOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4A88 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE UNIPROT SEQUENCE IS FURTHER PROCESSED INTO A MATURE FORM. STARTING METHIONINE OF MATURE PROTEIN IS CLEAVED. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 2106 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2107 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 A GLU 96 ? A 1_555 NZ A LYS 134 ? ? 2_546 2.12 2 1 ND2 A ASN 4 ? B 1_555 O A HOH 2042 ? ? 1_455 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 23 ? ? -91.74 -60.77 2 1 HIS A 126 ? ? 38.34 75.73 3 1 GLU A 127 ? ? -36.55 129.47 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 129 ? CG ? A LYS 129 CG 2 1 Y 1 A LYS 129 ? CD ? A LYS 129 CD 3 1 Y 1 A LYS 129 ? CE ? A LYS 129 CE 4 1 Y 1 A LYS 129 ? NZ ? A LYS 129 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH #