HEADER HYDROLASE 29-NOV-11 4A9X TITLE PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH THE SUBSTRATE ANALOGUE TITLE 2 APPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 48-633; COMPND 5 SYNONYM: ALKALINE PHOSPHATASE; COMPND 6 EC: 3.1.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 205922; SOURCE 4 STRAIN: PF0-1; SOURCE 5 ATCC: 13525; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C43 DELTA TAT; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE60-PHOX AND PREP4 KEYWDS HYDROLASE, BETA-PROPELLER EXPDTA X-RAY DIFFRACTION AUTHOR S.C.YONG,P.ROVERSI,J.E.D.LILLINGTON,O.B.ZELDIN,E.F.GARMAN,S.M.LEA, AUTHOR 2 B.C.BERKS REVDAT 4 20-DEC-23 4A9X 1 REMARK LINK ATOM REVDAT 3 17-SEP-14 4A9X 1 JRNL REVDAT 2 10-SEP-14 4A9X 1 JRNL REVDAT 1 05-DEC-12 4A9X 0 JRNL AUTH S.C.YONG,P.ROVERSI,J.LILLINGTON,F.RODRIGUEZ,M.KREHENBRINK, JRNL AUTH 2 O.B.ZELDIN,E.F.GARMAN,S.M.LEA,B.C.BERKS JRNL TITL A COMPLEX IRON-CALCIUM COFACTOR CATALYZING PHOSPHOTRANSFER JRNL TITL 2 CHEMISTRY JRNL REF SCIENCE V. 345 1170 2014 JRNL REFN ISSN 0036-8075 JRNL PMID 25190793 JRNL DOI 10.1126/SCIENCE.1254237 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 3 NUMBER OF REFLECTIONS : 51706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2614 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.25 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4124 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2206 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3919 REMARK 3 BIN R VALUE (WORKING SET) : 0.2189 REMARK 3 BIN FREE R VALUE : 0.2509 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 205 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.88530 REMARK 3 B22 (A**2) : 1.25940 REMARK 3 B33 (A**2) : 0.62590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.439 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.189 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.170 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.275 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.862 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.798 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9025 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 16231 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1914 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 133 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1434 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9025 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 582 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10099 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.25 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=FE CA. NUMBER OF REMARK 3 ATOMS WITH PROPER CCP4 ATOM TYPE=9438. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=0. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=5. REMARK 4 REMARK 4 4A9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 64.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4A9V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 6000, 0.1 M TRIS PH 7.9, 0.2 M REMARK 280 LICL, 300 UM CACL2, 1.5 MM APPCP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 30 O HOH A 2007 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 340 O HOH A 2347 4455 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 62.42 33.18 REMARK 500 ASP A 69 -118.61 -132.95 REMARK 500 CYS A 179 -93.02 -91.40 REMARK 500 GLU A 194 -90.46 -99.82 REMARK 500 ASN A 195 47.52 -86.93 REMARK 500 SER A 222 177.31 79.45 REMARK 500 ARG A 223 62.58 -104.44 REMARK 500 PHE A 270 -171.06 -172.00 REMARK 500 GLU A 273 -72.38 -82.63 REMARK 500 HIS A 338 69.91 -153.56 REMARK 500 LEU A 348 76.53 -106.93 REMARK 500 ARG A 385 76.98 56.99 REMARK 500 GLU A 387 -115.04 -107.31 REMARK 500 ASN A 405 84.83 -170.50 REMARK 500 ASP A 479 -68.86 -129.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2129 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A2165 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2242 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A2530 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A1594 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 FEO A1594 O 167.6 REMARK 620 3 CYS A 179 SG 101.8 84.4 REMARK 620 4 GLU A 194 OE1 85.9 104.9 90.4 REMARK 620 5 ACP A1000 O2G 90.0 84.6 167.8 87.4 REMARK 620 6 HOH A2106 O 88.2 80.8 91.8 174.0 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A1594 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 194 OE2 REMARK 620 2 FEO A1594 O 97.3 REMARK 620 3 GLU A 273 OE1 90.5 97.7 REMARK 620 4 ASP A 292 OD2 90.0 161.9 98.8 REMARK 620 5 GLU A 387 OE1 171.1 91.3 90.4 81.1 REMARK 620 6 ACP A1000 O3G 88.6 84.8 177.4 78.8 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1591 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 273 OE2 REMARK 620 2 GLU A 387 OE1 75.0 REMARK 620 3 ASP A 479 OD1 78.8 75.6 REMARK 620 4 ASP A 479 OD2 124.4 67.9 53.2 REMARK 620 5 FEO A1594 O 75.6 65.1 137.3 119.9 REMARK 620 6 HOH A2106 O 114.4 124.4 157.4 120.5 65.3 REMARK 620 7 HOH A2107 O 135.0 141.5 86.4 74.0 135.2 71.3 REMARK 620 8 HOH A2108 O 73.1 147.8 101.6 136.2 102.9 67.6 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1592 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 387 OE1 REMARK 620 2 GLU A 387 OE2 47.9 REMARK 620 3 ASP A 479 OD2 77.2 73.6 REMARK 620 4 ASP A 494 OD2 154.6 143.7 85.9 REMARK 620 5 ACP A1000 O1G 86.6 134.3 95.2 76.0 REMARK 620 6 ACP A1000 O1B 110.2 120.7 165.5 82.7 73.3 REMARK 620 7 HOH A2414 O 115.5 70.2 104.1 86.8 153.1 84.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1593 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 494 OD2 REMARK 620 2 GLU A 532 OE1 93.0 REMARK 620 3 GLU A 532 OE2 74.4 47.3 REMARK 620 4 ACP A1000 O1G 72.2 140.9 93.6 REMARK 620 5 ACP A1000 O2B 84.0 127.7 156.7 87.5 REMARK 620 6 HOH A2130 O 136.7 78.8 69.0 87.7 134.3 REMARK 620 7 HOH A2134 O 141.0 84.2 125.9 130.0 67.9 81.0 REMARK 620 8 HOH A2484 O 83.2 69.9 110.2 139.6 57.8 130.7 59.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1591 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1592 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1593 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 1594 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A9V RELATED DB: PDB REMARK 900 PSEUDOMONAS FLUORESCENS PHOX REMARK 900 RELATED ID: 3ZWU RELATED DB: PDB REMARK 900 PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH VANADATE, A TRANSITION REMARK 900 STATE ANALOGUE REMARK 999 REMARK 999 SEQUENCE REMARK 999 PF15179 IN ORLN DATABASE DBREF 4A9X A 1 586 UNP Q3K5N8 Q3K5N8_PSEPF 48 633 SEQADV 4A9X HIS A 587 UNP Q3K5N8 EXPRESSION TAG SEQADV 4A9X HIS A 588 UNP Q3K5N8 EXPRESSION TAG SEQADV 4A9X HIS A 589 UNP Q3K5N8 EXPRESSION TAG SEQADV 4A9X HIS A 590 UNP Q3K5N8 EXPRESSION TAG SEQADV 4A9X HIS A 591 UNP Q3K5N8 EXPRESSION TAG SEQADV 4A9X HIS A 592 UNP Q3K5N8 EXPRESSION TAG SEQRES 1 A 592 ALA SER VAL SER ALA GLY ASN SER ARG LEU LEU GLY PHE SEQRES 2 A 592 ASP SER ILE PRO ALA ALA THR THR ASP THR ILE SER LEU SEQRES 3 A 592 PRO LYS GLY TYR LYS SER SER VAL LEU ILE SER TRP GLY SEQRES 4 A 592 GLN PRO LEU HIS LYS ASN GLY PRO ALA PHE ASP PRO SER SEQRES 5 A 592 GLY ASN GLY THR ALA ALA ALA GLN GLU VAL GLN PHE GLY SEQRES 6 A 592 ASP ASN ASN ASP GLY MET SER LEU PHE GLU PHE PRO GLY SEQRES 7 A 592 GLU LYS ASN ARG ALA LEU MET ALA ILE ASN ASN GLU TYR SEQRES 8 A 592 THR ASN TYR ARG TYR LEU TYR PRO HIS GLY GLY MET PRO SEQRES 9 A 592 GLN SER ALA GLU ASP VAL ARG LYS ALA LEU ALA CYS GLU SEQRES 10 A 592 GLY VAL SER VAL ILE GLU VAL GLN ARG LYS ASN GLY GLN SEQRES 11 A 592 TRP GLN PHE VAL GLN GLY SER ARG TYR ASN ARG ARG ILE SEQRES 12 A 592 HIS GLY ASN SER PRO LEU ARG ILE SER GLY PRO ALA ALA SEQRES 13 A 592 GLY HIS GLU LEU MET LYS THR SER ALA ASP LYS HIS GLY SEQRES 14 A 592 LYS LYS VAL LEU GLY THR PHE GLN ASN CYS ALA ASN GLY SEQRES 15 A 592 LYS THR PRO TRP GLY THR TYR LEU THR CYS GLU GLU ASN SEQRES 16 A 592 PHE THR ASP CYS PHE GLY SER SER ASN ALA GLN GLN GLN SEQRES 17 A 592 PHE ASP PRO ALA GLN LYS ARG TYR GLY VAL SER ALA ALA SEQRES 18 A 592 SER ARG GLU ILE ASN TRP HIS PRO PHE ASP PRO ARG PHE SEQRES 19 A 592 ASP MET ALA LYS ASN PRO ASN GLU LEU ASN ARG HIS GLY SEQRES 20 A 592 TRP VAL VAL GLU ILE ASP PRO PHE ASP PRO GLN SER THR SEQRES 21 A 592 PRO VAL LYS ARG THR ALA LEU GLY ARG PHE LYS HIS GLU SEQRES 22 A 592 ASN ALA ALA LEU ALA GLU THR ASP ASP GLY ARG ALA VAL SEQRES 23 A 592 VAL TYR MET GLY ASP ASP GLU ARG GLY GLU PHE ILE TYR SEQRES 24 A 592 LYS PHE VAL SER ARG ASP LYS ILE ASN HIS ARG ASN ALA SEQRES 25 A 592 LYS ALA ASN ARG ASP ILE LEU ASP HIS GLY THR LEU TYR SEQRES 26 A 592 VAL ALA ARG PHE ASP ALA GLY ASP GLY ASN PRO ASP HIS SEQRES 27 A 592 PRO LYS GLY GLN GLY GLN TRP ILE GLU LEU THR HIS GLY SEQRES 28 A 592 LYS ASN GLY ILE ASP ALA SER SER GLY PHE ALA ASP GLN SEQRES 29 A 592 ALA GLU VAL LEU ILE HIS ALA ARG LEU ALA ALA SER VAL SEQRES 30 A 592 VAL GLY ALA THR ARG MET ASP ARG PRO GLU TRP ILE VAL SEQRES 31 A 592 VAL SER PRO LYS ASP GLY GLN VAL TYR CYS THR LEU THR SEQRES 32 A 592 ASN ASN ALA LYS ARG GLY GLU ASP GLY GLN PRO VAL GLY SEQRES 33 A 592 GLY PRO ASN PRO ARG GLU LYS ASN VAL TYR GLY GLN ILE SEQRES 34 A 592 LEU ARG TRP ARG THR ASP ARG ASP ASP HIS ALA SER LYS SEQRES 35 A 592 THR PHE ALA TRP ASP LEU PHE VAL VAL ALA GLY ASN PRO SEQRES 36 A 592 SER VAL HIS ALA GLY THR PRO LYS GLY GLY SER SER ASN SEQRES 37 A 592 ILE THR PRO GLN ASN MET PHE ASN SER PRO ASP GLY LEU SEQRES 38 A 592 GLY PHE ASP LYS ALA GLY ARG LEU TRP ILE LEU THR ASP SEQRES 39 A 592 GLY ASP SER SER ASN ALA GLY ASP PHE ALA GLY MET GLY SEQRES 40 A 592 ASN ASN GLN MET LEU CYS ALA ASP PRO ALA THR GLY GLU SEQRES 41 A 592 ILE ARG ARG PHE MET VAL GLY PRO ILE GLY CYS GLU VAL SEQRES 42 A 592 THR GLY ILE SER PHE SER PRO ASP GLN LYS THR LEU PHE SEQRES 43 A 592 VAL GLY ILE GLN HIS PRO GLY GLU ASN GLY GLY SER THR SEQRES 44 A 592 PHE PRO GLU HIS LEU PRO ASN GLY LYS PRO ARG SER SER SEQRES 45 A 592 VAL MET ALA ILE THR ARG GLU ASP GLY GLY ILE VAL GLY SEQRES 46 A 592 ALA HIS HIS HIS HIS HIS HIS HET EDO A 901 4 HET EDO A 902 4 HET ACP A1000 48 HET CA A1591 1 HET CA A1592 1 HET CA A1593 1 HET FEO A1594 3 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM CA CALCIUM ION HETNAM FEO MU-OXO-DIIRON HETSYN EDO ETHYLENE GLYCOL HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 ACP C11 H18 N5 O12 P3 FORMUL 5 CA 3(CA 2+) FORMUL 8 FEO FE2 O FORMUL 9 HOH *524(H2 O) HELIX 1 1 THR A 56 GLU A 61 1 6 HELIX 2 2 ASN A 93 TYR A 98 1 6 HELIX 3 3 SER A 106 GLU A 117 1 12 HELIX 4 4 HIS A 158 LYS A 162 5 5 HELIX 5 5 ASN A 195 PHE A 200 5 6 HELIX 6 6 ASP A 210 GLY A 217 1 8 HELIX 7 7 ASP A 231 PHE A 234 5 4 HELIX 8 8 ASN A 239 HIS A 246 5 8 HELIX 9 9 ALA A 266 GLY A 268 5 3 HELIX 10 10 ASN A 311 ARG A 316 5 6 HELIX 11 11 ASP A 317 ASP A 320 5 4 HELIX 12 12 ASP A 356 GLY A 360 5 5 HELIX 13 13 ASP A 363 HIS A 370 1 8 HELIX 14 14 HIS A 370 VAL A 378 1 9 HELIX 15 15 ARG A 436 ASP A 438 5 3 HELIX 16 16 THR A 461 GLY A 465 5 5 HELIX 17 17 ALA A 500 ALA A 504 5 5 SHEET 1 AA 4 TYR A 30 SER A 37 0 SHEET 2 AA 4 SER A 572 ARG A 578 -1 O VAL A 573 N LEU A 35 SHEET 3 AA 4 LEU A 545 GLN A 550 -1 O LEU A 545 N ILE A 576 SHEET 4 AA 4 GLU A 532 PHE A 538 -1 O GLU A 532 N GLN A 550 SHEET 1 AB 4 ASN A 68 GLU A 75 0 SHEET 2 AB 4 ARG A 82 ASN A 89 -1 O LEU A 84 N PHE A 74 SHEET 3 AB 4 GLY A 118 LYS A 127 -1 O GLY A 118 N ASN A 89 SHEET 4 AB 4 GLN A 130 PHE A 133 1 O GLN A 130 N LYS A 127 SHEET 1 AC 4 ASN A 68 GLU A 75 0 SHEET 2 AC 4 ARG A 82 ASN A 89 -1 O LEU A 84 N PHE A 74 SHEET 3 AC 4 GLY A 118 LYS A 127 -1 O GLY A 118 N ASN A 89 SHEET 4 AC 4 ARG A 141 HIS A 144 -1 O ARG A 141 N VAL A 121 SHEET 1 AD 2 GLN A 130 PHE A 133 0 SHEET 2 AD 2 GLY A 118 LYS A 127 1 O GLN A 125 N GLN A 132 SHEET 1 AE 6 LYS A 171 LEU A 173 0 SHEET 2 AE 6 PRO A 148 SER A 152 -1 O LEU A 149 N VAL A 172 SHEET 3 AE 6 VAL A 262 ARG A 264 1 O LYS A 263 N SER A 152 SHEET 4 AE 6 VAL A 249 ILE A 252 -1 O VAL A 249 N ARG A 264 SHEET 5 AE 6 TYR A 189 GLU A 193 -1 O TYR A 189 N ILE A 252 SHEET 6 AE 6 ASN A 178 LYS A 183 -1 N CYS A 179 O CYS A 192 SHEET 1 AF 9 ALA A 276 GLU A 279 0 SHEET 2 AF 9 ARG A 284 GLY A 290 -1 O VAL A 286 N ALA A 278 SHEET 3 AF 9 ILE A 298 LYS A 306 -1 O TYR A 299 N MET A 289 SHEET 4 AF 9 GLY A 322 PHE A 329 -1 O THR A 323 N VAL A 302 SHEET 5 AF 9 LYS A 340 GLU A 347 -1 O GLN A 344 N ARG A 328 SHEET 6 AF 9 THR A 443 VAL A 451 -1 O PHE A 444 N GLY A 343 SHEET 7 AF 9 GLN A 428 THR A 434 -1 O ILE A 429 N VAL A 450 SHEET 8 AF 9 VAL A 398 LEU A 402 -1 O VAL A 398 N TRP A 432 SHEET 9 AF 9 PRO A 386 VAL A 391 -1 N GLU A 387 O THR A 401 SHEET 1 AG 4 PRO A 478 PHE A 483 0 SHEET 2 AG 4 LEU A 489 THR A 493 -1 O TRP A 490 N GLY A 482 SHEET 3 AG 4 GLN A 510 ALA A 514 -1 O GLN A 510 N THR A 493 SHEET 4 AG 4 ILE A 521 VAL A 526 -1 O ARG A 522 N CYS A 513 LINK OE2 GLU A 90 FE1 FEO A1594 1555 1555 2.10 LINK SG CYS A 179 FE1 FEO A1594 1555 1555 2.50 LINK OE1 GLU A 194 FE1 FEO A1594 1555 1555 2.10 LINK OE2 GLU A 194 FE2 FEO A1594 1555 1555 1.98 LINK OE2 GLU A 273 CA CA A1591 1555 1555 2.36 LINK OE1 GLU A 273 FE2 FEO A1594 1555 1555 2.01 LINK OD2 ASP A 292 FE2 FEO A1594 1555 1555 2.01 LINK OE1 GLU A 387 CA CA A1591 1555 1555 3.05 LINK OE1 GLU A 387 CA CA A1592 1555 1555 2.69 LINK OE2 GLU A 387 CA CA A1592 1555 1555 2.73 LINK OE1 GLU A 387 FE2 FEO A1594 1555 1555 2.16 LINK OD1 ASP A 479 CA CA A1591 1555 1555 2.39 LINK OD2 ASP A 479 CA CA A1591 1555 1555 2.50 LINK OD2 ASP A 479 CA CA A1592 1555 1555 2.32 LINK OD2 ASP A 494 CA CA A1592 1555 1555 2.30 LINK OD2 ASP A 494 CA CA A1593 1555 1555 2.40 LINK OE1 GLU A 532 CA CA A1593 1555 1555 2.33 LINK OE2 GLU A 532 CA CA A1593 1555 1555 2.98 LINK O1G ACP A1000 CA CA A1592 1555 1555 2.33 LINK O1B ACP A1000 CA CA A1592 1555 1555 2.53 LINK O1G ACP A1000 CA CA A1593 1555 1555 2.45 LINK O2B ACP A1000 CA CA A1593 1555 1555 2.73 LINK O2G ACP A1000 FE1 FEO A1594 1555 1555 2.37 LINK O3G ACP A1000 FE2 FEO A1594 1555 1555 2.13 LINK CA CA A1591 O FEO A1594 1555 1555 2.20 LINK CA CA A1591 O HOH A2106 1555 1555 2.79 LINK CA CA A1591 O HOH A2107 1555 1555 2.61 LINK CA CA A1591 O HOH A2108 1555 1555 2.83 LINK CA CA A1592 O HOH A2414 1555 1555 2.51 LINK CA CA A1593 O HOH A2130 1555 1555 2.54 LINK CA CA A1593 O HOH A2134 1555 1555 2.44 LINK CA CA A1593 O HOH A2484 1555 1555 2.48 LINK FE1 FEO A1594 O HOH A2106 1555 1555 2.28 CISPEP 1 PHE A 560 PRO A 561 0 0.33 SITE 1 AC1 8 PRO A 154 HIS A 321 GLY A 322 GLN A 364 SITE 2 AC1 8 LEU A 368 HOH A2307 HOH A2358 HOH A2360 SITE 1 AC2 1 LYS A 423 SITE 1 AC3 24 GLU A 90 GLU A 194 ASN A 195 ARG A 223 SITE 2 AC3 24 ASP A 292 ARG A 294 ARG A 385 GLU A 387 SITE 3 AC3 24 ASP A 479 ASP A 494 CA A1591 CA A1592 SITE 4 AC3 24 CA A1593 FEO A1594 HOH A2132 HOH A2134 SITE 5 AC3 24 HOH A2255 HOH A2258 HOH A2261 HOH A2329 SITE 6 AC3 24 HOH A2332 HOH A2413 HOH A2484 HOH A2529 SITE 1 AC4 8 GLU A 273 GLU A 387 ASP A 479 ACP A1000 SITE 2 AC4 8 FEO A1594 HOH A2106 HOH A2107 HOH A2108 SITE 1 AC5 5 GLU A 387 ASP A 479 ASP A 494 ACP A1000 SITE 2 AC5 5 HOH A2414 SITE 1 AC6 6 ASP A 494 GLU A 532 ACP A1000 HOH A2130 SITE 2 AC6 6 HOH A2134 HOH A2484 SITE 1 AC7 9 GLU A 90 CYS A 179 GLU A 194 GLU A 273 SITE 2 AC7 9 ASP A 292 GLU A 387 ACP A1000 CA A1591 SITE 3 AC7 9 HOH A2106 CRYST1 70.400 78.900 111.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008958 0.00000