HEADER HYDROLASE/DNA 01-DEC-11 4AAD TITLE CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS WILD- TITLE 2 TYPE TARGET IN ABSENCE OF METAL IONS AT THE ACTIVE SITE (THE FOUR TITLE 3 CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: I-CREI, 23S RRNA INTRON PROTEIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 24MER DNA; COMPND 10 CHAIN: E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: CDFDUET1, PET24D; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, GENE TARGETING, PROTEIN-DNA INTERACTION, KEYWDS 2 HOMING ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO, AUTHOR 2 J.C.EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU,J.PRIETO,G.MONTOYA REVDAT 3 20-DEC-23 4AAD 1 JRNL REMARK REVDAT 2 22-AUG-12 4AAD 1 JRNL REMARK REVDAT 1 02-MAY-12 4AAD 0 JRNL AUTH R.MOLINA,P.REDONDO,S.STELLA,M.MARENCHINO,M.D'ABRAMO, JRNL AUTH 2 F.L.GERVASIO,J.CHARLES EPINAT,J.VALTON,S.GRIZOT,P.DUCHATEAU, JRNL AUTH 3 J.PRIETO,G.MONTOYA JRNL TITL NON-SPECIFIC PROTEIN-DNA INTERACTIONS CONTROL I-CREI TARGET JRNL TITL 2 BINDING AND CLEAVAGE. JRNL REF NUCLEIC ACIDS RES. V. 40 6936 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22495931 JRNL DOI 10.1093/NAR/GKS320 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2111 - 6.4434 1.00 1381 154 0.1974 0.1811 REMARK 3 2 6.4434 - 5.1163 1.00 1307 146 0.2155 0.2560 REMARK 3 3 5.1163 - 4.4701 1.00 1259 139 0.1812 0.2230 REMARK 3 4 4.4701 - 4.0617 1.00 1281 143 0.1933 0.2507 REMARK 3 5 4.0617 - 3.7707 1.00 1253 138 0.2111 0.2859 REMARK 3 6 3.7707 - 3.5485 1.00 1255 141 0.2241 0.2516 REMARK 3 7 3.5485 - 3.3708 0.99 1263 139 0.2389 0.2746 REMARK 3 8 3.3708 - 3.2241 1.00 1246 139 0.2430 0.3012 REMARK 3 9 3.2241 - 3.1000 1.00 1229 137 0.3139 0.3663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 74.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.04020 REMARK 3 B22 (A**2) : 1.65690 REMARK 3 B33 (A**2) : 2.38330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3646 REMARK 3 ANGLE : 1.036 5117 REMARK 3 CHIRALITY : 0.063 579 REMARK 3 PLANARITY : 0.003 474 REMARK 3 DIHEDRAL : 25.079 1437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.4485 14.6971 -23.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.7532 REMARK 3 T33: 0.6807 T12: 0.1753 REMARK 3 T13: -0.0307 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 2.1285 L22: 7.5353 REMARK 3 L33: 7.0188 L12: 1.3196 REMARK 3 L13: 1.4396 L23: 5.5985 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.0384 S13: -0.4563 REMARK 3 S21: 0.3164 S22: 1.0031 S23: -0.7189 REMARK 3 S31: 0.5155 S32: 1.2483 S33: -0.8328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12755 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XE0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG300, 0.1M TRIS PH 8.5, 5% REMARK 280 PEG8000, 10% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.33400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.97950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.33400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.97950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 75 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 75 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 153 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DC E 517 OP2 C2 REMARK 480 DT E 520 OP1 REMARK 480 DG E 523 O4' REMARK 480 DC F 602 C2' REMARK 480 DA F 605 C4' REMARK 480 DA F 606 C3' REMARK 480 DC F 607 O3' REMARK 480 DT F 609 C1' REMARK 480 DC F 610 O4' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC F 614 O1 GOL B 1156 1.88 REMARK 500 OG1 THR B 46 OP2 DG F 615 2.07 REMARK 500 O GLN A 92 NE2 GLN A 99 2.16 REMARK 500 N6 DA F 606 O2 GOL F 1625 2.17 REMARK 500 O1 GOL B 1155 O HOH B 2011 2.18 REMARK 500 N2 DG E 518 O2 DC F 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 507 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT E 512 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC E 514 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 516 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT E 520 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG E 523 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG E 523 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT F 609 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA F 616 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DA F 616 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -63.11 -98.21 REMARK 500 LYS A 142 -69.60 -125.16 REMARK 500 LEU B 97 -61.01 -127.79 REMARK 500 LYS B 139 -71.53 -103.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 1625 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 1525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G9Z RELATED DB: PDB REMARK 900 LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEXWITH REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 1BP7 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING REMARK 900 SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2VBL RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1AF5 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE REMARK 900 RELATED ID: 2VBJ RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBO RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1MOW RELATED DB: PDB REMARK 900 E-DREI REMARK 900 RELATED ID: 1G9Y RELATED DB: PDB REMARK 900 HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITHCALCIUM REMARK 900 RELATED ID: 1N3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE II REMARK 900 (PALINDROME OF RIGHT SIDE OF WILDTYPE DNATARGET SEQUENCE) REMARK 900 RELATED ID: 2VBN RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 1T9I RELATED DB: PDB REMARK 900 I-CREI(D20N)/DNA COMPLEX REMARK 900 RELATED ID: 1U0D RELATED DB: PDB REMARK 900 Y33H MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 1T9J RELATED DB: PDB REMARK 900 I-CREI(Q47E)/DNA COMPLEX REMARK 900 RELATED ID: 1N3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE I REMARK 900 (PALINDROME OF LEFT SIDE OF WILDTYPE DNA TARGETSEQUENCE) REMARK 900 RELATED ID: 1U0C RELATED DB: PDB REMARK 900 Y33C MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 4AAF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN REMARK 900 ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED REMARK 900 BY TGCA FROM 5' TO 3') REMARK 900 RELATED ID: 4AAG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET IN PRESENCE OF CA AT THE ACTIVE SITE (THE FOUR REMARK 900 CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED REMARK 900 BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN REMARK 900 ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED REMARK 900 BY AGCG FROM 5' TO 3') DBREF 4AAD A 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AAD B 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AAD E 501 524 PDB 4AAD 4AAD 501 524 DBREF 4AAD F 601 624 PDB 4AAD 4AAD 601 624 SEQADV 4AAD ASN A 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 4AAD ASN B 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQRES 1 A 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 A 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 B 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 B 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 E 24 DT DC DA DA DA DA DC DG DT DC DG DT DA SEQRES 2 E 24 DC DG DA DC DG DT DT DT DT DG DA SEQRES 1 F 24 DT DC DA DA DA DA DC DG DT DC DG DT DA SEQRES 2 F 24 DC DG DA DC DG DT DT DT DT DG DA HET GOL A1153 6 HET GOL B1154 6 HET GOL B1155 6 HET GOL B1156 6 HET GOL B1157 6 HET GOL B1158 6 HET GOL E1525 6 HET GOL F1625 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 8(C3 H8 O3) FORMUL 13 HOH *26(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 51 GLY A 63 1 13 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 PRO A 93 LEU A 95 5 3 HELIX 5 5 LYS A 98 LYS A 116 1 19 HELIX 6 6 SER A 118 ASN A 136 1 19 HELIX 7 7 THR A 144 ALA A 150 1 7 HELIX 8 8 ASN B 6 GLY B 21 1 16 HELIX 9 9 ARG B 51 GLY B 63 1 13 HELIX 10 10 GLU B 80 GLN B 92 1 13 HELIX 11 11 PRO B 93 LEU B 95 5 3 HELIX 12 12 LYS B 98 LEU B 135 1 38 HELIX 13 13 THR B 144 LEU B 152 1 9 SHEET 1 AA 4 GLY A 21 LYS A 28 0 SHEET 2 AA 4 GLN A 38 LYS A 48 -1 O GLN A 38 N LYS A 28 SHEET 3 AA 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA 4 TYR A 66 ASP A 69 -1 O TYR A 66 N ILE A 77 SHEET 1 BA 4 SER B 22 PRO B 29 0 SHEET 2 BA 4 HIS B 37 LYS B 48 -1 O GLN B 38 N LYS B 28 SHEET 3 BA 4 VAL B 73 LEU B 78 -1 O SER B 74 N GLN B 47 SHEET 4 BA 4 TYR B 66 ASP B 69 -1 O TYR B 66 N ILE B 77 SITE 1 AC1 7 LYS A 28 THR A 42 ARG A 68 SER A 79 SITE 2 AC1 7 DG E 518 DA F 606 DC F 607 SITE 1 AC2 1 LYS B 82 SITE 1 AC3 9 GLN B 26 LYS B 28 THR B 42 SER B 79 SITE 2 AC3 9 HOH B2011 DA E 505 DA E 506 DC E 507 SITE 3 AC3 9 DG F 618 SITE 1 AC4 5 ASP B 20 THR B 46 HOH B2001 DC F 614 SITE 2 AC4 5 DG F 615 SITE 1 AC5 5 ASP A 20 THR A 46 GOL B1157 DC E 514 SITE 2 AC5 5 DG E 515 SITE 1 AC6 1 DA E 513 SITE 1 AC7 6 GOL A1153 GLY B 19 GLY B 21 SER B 22 SITE 2 AC7 6 LYS B 98 DA F 616 SITE 1 AC8 2 LYS B 107 GLU B 110 CRYST1 49.406 84.668 159.959 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006252 0.00000