HEADER VIRAL PROTEIN 02-DEC-11 4AAI TITLE THERMOSTABLE PROTEIN FROM HYPERTHERMOPHILIC VIRUS SSV-RH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF E73; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS VIRUS RAGGED HILLS; SOURCE 3 ORGANISM_TAXID: 256994; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET14; SOURCE 9 OTHER_DETAILS: ORF E73 OBTAINED FROM SULFOLOBUS SPINDLE SHAPED VIRUS SOURCE 10 (RAGGED HILLS) THAT ATTACKS THE CRENARCHAEA SULFOLOBUS SOLFATARCUS KEYWDS VIRAL PROTEIN, EXTREMOPHILE, ARCHAEA, RIBBON-HELIX-HELIX PROTEINS, KEYWDS 2 DNA-BINDING PROTEINS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.SCHLENKER,A.GOEL,B.P.TRIPET,S.MENON,C.M.LAWRENCE,V.COPIE REVDAT 8 19-JUN-24 4AAI 1 REMARK REVDAT 7 14-JUN-23 4AAI 1 REMARK REVDAT 6 30-NOV-16 4AAI 1 ATOM MASTER REVDAT 5 17-DEC-14 4AAI 1 REMARK REVDAT 4 05-FEB-14 4AAI 1 ATOM TER MASTER REVDAT 3 01-MAY-13 4AAI 1 REMARK ATOM TER MASTER REVDAT 2 18-APR-12 4AAI 1 JRNL REVDAT 1 11-JAN-12 4AAI 0 SPRSDE 11-JAN-12 4AAI 4A1Q JRNL AUTH C.SCHLENKER,A.GOEL,B.P.TRIPET,S.MENON,T.WILLI,M.DLAKIC, JRNL AUTH 2 M.J.YOUNG,C.M.LAWRENCE,V.COPI JRNL TITL STRUCTURAL STUDIES OF E73 FROM A HYPERTHERMOPHILIC ARCHAEAL JRNL TITL 2 VIRUS IDENTIFY THE "RH3" DOMAIN, AN ELABORATED RIBBON-HELIX- JRNL TITL 3 HELIX MOTIF INVOLVED IN DNA RECOGNITION. JRNL REF BIOCHEMISTRY V. 51 2899 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22409376 JRNL DOI 10.1021/BI201791S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 4AAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 312.0; 312.0; 312.0; 312.0; REMARK 210 312.0; 312.0; 312.0; 312.0; 312.0 REMARK 210 PH : 5.0; 5.0; 5.0; 5.0; 5.0; 5.0; REMARK 210 5.0; 5.0; 5.0 REMARK 210 IONIC STRENGTH : 0.05; 0.05; 0.05; 0.05; 0.05; REMARK 210 0.05; 0.05; 0.05; 0.05 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM; 1.0 REMARK 210 ATM; 1.0 ATM; 1.0 ATM; 1.0 ATM; REMARK 210 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : PMSF 1 MM, SODIUM AZIDE 0.01 %, REMARK 210 POTASSIUM PHOSPHATE 50 MM, D2O REMARK 210 10 %, EDTA 1 MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 2D 1H-13C REMARK 210 HSQC; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, CNS REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED E73. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 26 H TYR B 30 1.56 REMARK 500 O LYS A 10 O PHE B 16 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 177.07 -58.86 REMARK 500 1 SER A 4 -67.12 69.10 REMARK 500 1 ALA A 8 -172.00 -176.42 REMARK 500 1 ASP A 17 -39.27 156.85 REMARK 500 1 ASN A 50 -61.38 -98.45 REMARK 500 1 LEU A 54 100.83 -53.46 REMARK 500 1 PHE A 70 76.17 -116.23 REMARK 500 1 GLU B 3 -66.43 -153.07 REMARK 500 1 SER B 4 -78.20 -169.48 REMARK 500 1 ASP B 17 -35.81 162.03 REMARK 500 1 LEU B 54 101.65 -54.01 REMARK 500 1 PHE B 70 73.97 -110.02 REMARK 500 2 VAL A 2 31.70 -144.22 REMARK 500 2 GLU A 3 -63.39 -151.51 REMARK 500 2 SER A 4 126.77 -172.08 REMARK 500 2 LYS A 5 -79.28 64.30 REMARK 500 2 ASP A 17 -38.95 156.21 REMARK 500 2 ASN A 50 -61.17 -97.98 REMARK 500 2 LEU A 54 100.83 -53.80 REMARK 500 2 PHE A 70 73.84 -116.09 REMARK 500 2 GLU B 3 -64.36 -157.53 REMARK 500 2 LYS B 5 -79.96 62.80 REMARK 500 2 LYS B 6 -51.81 -130.74 REMARK 500 2 ASP B 17 -37.79 160.93 REMARK 500 2 LEU B 54 101.81 -54.32 REMARK 500 2 PHE B 70 76.81 -110.80 REMARK 500 2 ALA B 72 118.05 -164.57 REMARK 500 3 VAL A 2 47.73 -95.62 REMARK 500 3 GLU A 3 36.25 -169.60 REMARK 500 3 SER A 4 -44.71 -176.66 REMARK 500 3 LYS A 5 -70.81 -100.91 REMARK 500 3 ALA A 8 -168.19 -122.26 REMARK 500 3 ASP A 17 -38.69 156.45 REMARK 500 3 ASN A 50 -61.42 -97.77 REMARK 500 3 LEU A 54 101.66 -54.14 REMARK 500 3 PHE A 70 74.00 -111.71 REMARK 500 3 PRO A 71 -168.11 -70.94 REMARK 500 3 ALA A 72 -47.03 -142.29 REMARK 500 3 VAL B 2 144.82 -173.03 REMARK 500 3 SER B 4 -60.61 175.63 REMARK 500 3 ASP B 17 -37.62 157.34 REMARK 500 3 ASN B 50 -60.77 -97.34 REMARK 500 3 LEU B 54 100.75 -53.93 REMARK 500 3 PHE B 70 76.32 -110.35 REMARK 500 4 GLU A 3 108.10 55.34 REMARK 500 4 SER A 4 172.93 67.69 REMARK 500 4 LYS A 6 -49.45 176.63 REMARK 500 4 ASP A 17 -38.15 156.29 REMARK 500 4 ASN A 50 -61.28 -98.12 REMARK 500 4 LEU A 54 100.97 -53.94 REMARK 500 REMARK 500 THIS ENTRY HAS 280 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18132 RELATED DB: BMRB DBREF 4AAI A 1 73 UNP Q6TRU9 Q6TRU9_9VIRU 1 73 DBREF 4AAI B 1 73 UNP Q6TRU9 Q6TRU9_9VIRU 1 73 SEQRES 1 A 73 MET VAL GLU SER LYS LYS ILE ALA LYS LYS LYS THR THR SEQRES 2 A 73 LEU ALA PHE ASP GLU ASP VAL TYR HIS THR LEU LYS LEU SEQRES 3 A 73 VAL SER VAL TYR LEU ASN ARG ASP MET THR GLU ILE ILE SEQRES 4 A 73 GLU GLU ALA VAL VAL MET TRP LEU ILE GLN ASN LYS GLU SEQRES 5 A 73 LYS LEU PRO ASN GLU LEU LYS PRO LYS ILE ASP GLU ILE SEQRES 6 A 73 SER LYS ARG PHE PHE PRO ALA LYS SEQRES 1 B 73 MET VAL GLU SER LYS LYS ILE ALA LYS LYS LYS THR THR SEQRES 2 B 73 LEU ALA PHE ASP GLU ASP VAL TYR HIS THR LEU LYS LEU SEQRES 3 B 73 VAL SER VAL TYR LEU ASN ARG ASP MET THR GLU ILE ILE SEQRES 4 B 73 GLU GLU ALA VAL VAL MET TRP LEU ILE GLN ASN LYS GLU SEQRES 5 B 73 LYS LEU PRO ASN GLU LEU LYS PRO LYS ILE ASP GLU ILE SEQRES 6 B 73 SER LYS ARG PHE PHE PRO ALA LYS HELIX 1 1 ASP A 17 LEU A 31 1 15 HELIX 2 2 ASP A 34 ASN A 50 1 17 HELIX 3 3 LYS A 51 LEU A 54 5 4 HELIX 4 4 PRO A 60 PHE A 70 1 11 HELIX 5 5 ASP B 17 LEU B 31 1 15 HELIX 6 6 ASP B 34 LYS B 51 1 18 HELIX 7 7 PRO B 60 PHE B 70 1 11 SHEET 1 AA 2 LYS A 11 ALA A 15 0 SHEET 2 AA 2 LYS B 11 ALA B 15 -1 O THR B 12 N LEU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1