HEADER ANTIMICROBIAL PROTEIN 06-DEC-11 4AAZ TITLE X-RAY STRUCTURE OF NICOTIANA ALATA DEFENSIN 1 NAD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLOWER-SPECIFIC DEFENSIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 26-72; COMPND 5 SYNONYM: NAD1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA ALATA; SOURCE 3 ORGANISM_COMMON: PERSIAN TOBACCO; SOURCE 4 ORGANISM_TAXID: 4087 KEYWDS ANTIMICROBIAL PROTEIN, INNATE IMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR F.T.LAY,G.D.MILLS,M.D.HULETT,M.KVANSAKUL REVDAT 4 06-NOV-24 4AAZ 1 REMARK REVDAT 3 08-AUG-12 4AAZ 1 REMARK REVDAT 2 20-JUN-12 4AAZ 1 JRNL REVDAT 1 25-APR-12 4AAZ 0 JRNL AUTH F.T.LAY,G.D.MILLS,I.K.POON,N.P.COWIESON,N.KIRBY,A.A.BAXTER, JRNL AUTH 2 N.L.VAN DER WEERDEN,C.DOGOVSKI,M.A.PERUGINI,M.A.ANDERSON, JRNL AUTH 3 M.KVANSAKUL,M.D.HULETT JRNL TITL DIMERIZATION OF PLANT DEFENSIN NAD1 ENHANCES ITS ANTIFUNGAL JRNL TITL 2 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 287 19961 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22511788 JRNL DOI 10.1074/JBC.M111.331009 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2475 - 2.5438 1.00 2820 136 0.1381 0.1497 REMARK 3 2 2.5438 - 2.0191 1.00 2748 152 0.1044 0.1175 REMARK 3 3 2.0191 - 1.7639 1.00 2745 148 0.1022 0.1105 REMARK 3 4 1.7639 - 1.6026 1.00 2719 158 0.1025 0.1330 REMARK 3 5 1.6026 - 1.4877 1.00 2730 126 0.1152 0.1323 REMARK 3 6 1.4877 - 1.4000 0.94 2540 149 0.1686 0.2034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 56.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09200 REMARK 3 B22 (A**2) : -0.47110 REMARK 3 B33 (A**2) : -0.41750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.08020 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 777 REMARK 3 ANGLE : 1.514 1023 REMARK 3 CHIRALITY : 0.100 114 REMARK 3 PLANARITY : 0.010 129 REMARK 3 DIHEDRAL : 12.971 312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1452 9.0924 10.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.0667 REMARK 3 T33: 0.0569 T12: 0.0078 REMARK 3 T13: -0.0048 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 5.8386 L22: 4.1918 REMARK 3 L33: 2.7088 L12: -4.5030 REMARK 3 L13: -3.7279 L23: 2.4060 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: -0.1110 S13: 0.0033 REMARK 3 S21: 0.1632 S22: -0.0024 S23: 0.0979 REMARK 3 S31: -0.0535 S32: 0.0076 S33: 0.0934 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4611 -0.9836 0.7191 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0189 REMARK 3 T33: 0.0343 T12: 0.0029 REMARK 3 T13: 0.0012 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.5589 L22: 2.2777 REMARK 3 L33: 1.9976 L12: -0.4437 REMARK 3 L13: -0.1617 L23: 0.5147 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0350 S13: -0.0170 REMARK 3 S21: -0.0189 S22: 0.0842 S23: -0.0759 REMARK 3 S31: 0.0643 S32: 0.0238 S33: -0.0338 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 11:16) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1547 3.8340 -3.1261 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0410 REMARK 3 T33: 0.0754 T12: 0.0116 REMARK 3 T13: 0.0029 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.1622 L22: 1.4952 REMARK 3 L33: 1.7396 L12: 0.8797 REMARK 3 L13: 0.4948 L23: -0.7161 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0661 S13: -0.1216 REMARK 3 S21: 0.0562 S22: -0.0743 S23: -0.4338 REMARK 3 S31: 0.0728 S32: 0.1558 S33: 0.0931 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 17:21) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8934 8.5654 -4.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0214 REMARK 3 T33: 0.0482 T12: 0.0028 REMARK 3 T13: -0.0042 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.7384 L22: 1.8696 REMARK 3 L33: 2.0844 L12: 1.3043 REMARK 3 L13: -0.7592 L23: -0.4761 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: 0.0258 S13: 0.1491 REMARK 3 S21: -0.0257 S22: 0.0781 S23: -0.0976 REMARK 3 S31: -0.0096 S32: 0.0746 S33: 0.0177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 22:27) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7384 3.0091 -3.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0163 REMARK 3 T33: 0.0188 T12: 0.0039 REMARK 3 T13: -0.0041 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.1695 L22: 6.6015 REMARK 3 L33: 1.9383 L12: 1.6347 REMARK 3 L13: 0.4586 L23: -1.6038 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.0402 S13: -0.1574 REMARK 3 S21: -0.2641 S22: 0.0793 S23: -0.0161 REMARK 3 S31: 0.0595 S32: -0.0137 S33: -0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 28:33) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7761 7.2205 1.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0125 REMARK 3 T33: 0.0283 T12: 0.0018 REMARK 3 T13: -0.0041 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 7.4138 L22: 2.3786 REMARK 3 L33: 3.0414 L12: 1.0413 REMARK 3 L13: 1.1484 L23: 0.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.0086 S13: 0.0107 REMARK 3 S21: 0.0336 S22: -0.0236 S23: 0.0306 REMARK 3 S31: 0.0355 S32: -0.0666 S33: 0.0454 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4817 6.8484 4.5787 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.0702 REMARK 3 T33: 0.0764 T12: -0.0147 REMARK 3 T13: -0.0209 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 5.3264 L22: 2.9473 REMARK 3 L33: 5.7593 L12: 0.6621 REMARK 3 L13: 3.3213 L23: -1.6821 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: -0.0065 S13: 0.2635 REMARK 3 S21: 0.2408 S22: -0.1953 S23: -0.4316 REMARK 3 S31: -0.2271 S32: 0.2951 S33: 0.0429 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 40:47) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8500 6.2958 5.8261 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0211 REMARK 3 T33: 0.0415 T12: -0.0032 REMARK 3 T13: -0.0067 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.5409 L22: 0.8406 REMARK 3 L33: 1.6916 L12: -1.4540 REMARK 3 L13: -1.3762 L23: 0.6483 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0460 S13: -0.0063 REMARK 3 S21: 0.0737 S22: -0.0391 S23: -0.0032 REMARK 3 S31: 0.0314 S32: -0.0926 S33: 0.0317 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2840 7.0396 -11.6853 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1182 REMARK 3 T33: 0.1396 T12: -0.0051 REMARK 3 T13: 0.1167 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 2.4913 L22: 1.7262 REMARK 3 L33: 0.7816 L12: 0.9204 REMARK 3 L13: -0.8622 L23: -0.6806 REMARK 3 S TENSOR REMARK 3 S11: -0.1994 S12: -0.4428 S13: -0.4581 REMARK 3 S21: 0.3428 S22: 0.0690 S23: 0.5497 REMARK 3 S31: 0.1365 S32: -0.3402 S33: -0.2757 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 7:13) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4265 15.4700 -21.3036 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0155 REMARK 3 T33: 0.0387 T12: 0.0022 REMARK 3 T13: 0.0002 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3363 L22: 3.7762 REMARK 3 L33: 4.1598 L12: -0.4920 REMARK 3 L13: -0.9258 L23: 1.5878 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0964 S13: 0.0855 REMARK 3 S21: -0.2239 S22: 0.0494 S23: -0.0114 REMARK 3 S31: -0.1089 S32: -0.0174 S33: -0.0580 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 14:19) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8827 6.4963 -24.5456 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0260 REMARK 3 T33: 0.0367 T12: -0.0025 REMARK 3 T13: 0.0025 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.7257 L22: 1.3497 REMARK 3 L33: 4.5416 L12: -1.9447 REMARK 3 L13: 2.7387 L23: -0.5991 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.0145 S13: -0.1125 REMARK 3 S21: -0.0138 S22: 0.0650 S23: 0.0279 REMARK 3 S31: 0.0180 S32: 0.0408 S33: -0.0698 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 20:25) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4902 8.5492 -16.3250 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0140 REMARK 3 T33: 0.0480 T12: -0.0011 REMARK 3 T13: -0.0155 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.1308 L22: 5.0341 REMARK 3 L33: 7.5944 L12: -1.1735 REMARK 3 L13: 1.8507 L23: 3.5147 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.0996 S13: 0.0540 REMARK 3 S21: 0.1132 S22: 0.1446 S23: -0.3184 REMARK 3 S31: 0.1567 S32: 0.2604 S33: -0.1112 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 26:30) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6643 10.9002 -10.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0295 REMARK 3 T33: 0.0302 T12: 0.0040 REMARK 3 T13: -0.0190 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.8185 L22: 1.3734 REMARK 3 L33: 1.4887 L12: 0.4146 REMARK 3 L13: -0.5844 L23: -0.3606 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: -0.0116 S13: 0.1089 REMARK 3 S21: 0.0996 S22: 0.0166 S23: -0.0743 REMARK 3 S31: -0.1081 S32: -0.0453 S33: -0.0730 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 31:36) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6745 4.6556 -20.5393 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.0149 REMARK 3 T33: 0.0296 T12: 0.0176 REMARK 3 T13: -0.0410 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 4.4514 L22: 2.2648 REMARK 3 L33: 3.5156 L12: 0.7836 REMARK 3 L13: 3.4274 L23: 1.9790 REMARK 3 S TENSOR REMARK 3 S11: 0.2369 S12: 0.0870 S13: -0.1278 REMARK 3 S21: -0.0240 S22: -0.0428 S23: 0.1606 REMARK 3 S31: 0.5482 S32: 0.0288 S33: -0.4963 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 37:41) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8428 10.2372 -25.7402 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.0571 REMARK 3 T33: 0.0555 T12: 0.0192 REMARK 3 T13: -0.0173 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.4282 L22: 4.9076 REMARK 3 L33: 6.2384 L12: 1.1870 REMARK 3 L13: 2.3688 L23: 2.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: -0.0386 S13: 0.1424 REMARK 3 S21: -0.2232 S22: -0.0979 S23: 0.3397 REMARK 3 S31: -0.2353 S32: -0.3863 S33: 0.1057 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 42:47) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5922 6.4031 -10.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0542 REMARK 3 T33: 0.0500 T12: -0.0025 REMARK 3 T13: -0.0126 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.7273 L22: 2.9239 REMARK 3 L33: 4.0786 L12: -0.0862 REMARK 3 L13: -0.4170 L23: -1.6431 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: -0.4817 S13: 0.0146 REMARK 3 S21: 0.2344 S22: 0.0044 S23: 0.3159 REMARK 3 S31: -0.0668 S32: -0.1537 S33: -0.0982 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 1500 AND 10% SUCCINATE REMARK 280 -PHOSPHATE-GLYCINE BUFFER PH 9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.34250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2002 O HOH B 2004 2555 1.88 REMARK 500 O HOH A 2007 O HOH A 2044 2655 1.98 REMARK 500 NH2 ARG B 1 O HOH A 2041 1455 2.10 REMARK 500 NE ARG B 1 O HOH A 2041 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 28 30.46 76.97 REMARK 500 ILE B 37 -63.32 74.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2029 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1049 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1050 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1051 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1049 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AB0 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF NICOTIANA ALATA DEFENSIN NAD1 DBREF 4AAZ A 1 47 UNP Q8GTM0 DEF_NICAL 26 72 DBREF 4AAZ B 1 47 UNP Q8GTM0 DEF_NICAL 26 72 SEQRES 1 A 47 ARG GLU CYS LYS THR GLU SER ASN THR PHE PRO GLY ILE SEQRES 2 A 47 CYS ILE THR LYS PRO PRO CYS ARG LYS ALA CYS ILE SER SEQRES 3 A 47 GLU LYS PHE THR ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 A 47 ARG CYS LEU CYS THR LYS PRO CYS SEQRES 1 B 47 ARG GLU CYS LYS THR GLU SER ASN THR PHE PRO GLY ILE SEQRES 2 B 47 CYS ILE THR LYS PRO PRO CYS ARG LYS ALA CYS ILE SER SEQRES 3 B 47 GLU LYS PHE THR ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 B 47 ARG CYS LEU CYS THR LYS PRO CYS HET EDO A1048 4 HET EDO A1049 4 HET EDO A1050 4 HET PO4 A1051 5 HET EDO B1048 4 HET EDO B1049 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 6 PO4 O4 P 3- FORMUL 9 HOH *124(H2 O) HELIX 1 1 THR A 16 GLU A 27 1 12 HELIX 2 2 THR B 16 GLU B 27 1 12 SHEET 1 AA 3 GLU A 2 GLU A 6 0 SHEET 2 AA 3 CYS A 41 PRO A 46 -1 O CYS A 43 N THR A 5 SHEET 3 AA 3 ASP A 31 CYS A 34 -1 O ASP A 31 N THR A 44 SHEET 1 BA 3 GLU B 2 GLU B 6 0 SHEET 2 BA 3 CYS B 41 PRO B 46 -1 O CYS B 43 N THR B 5 SHEET 3 BA 3 ASP B 31 CYS B 34 -1 O ASP B 31 N THR B 44 SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 34 1555 1555 2.06 SSBOND 3 CYS A 20 CYS A 41 1555 1555 2.04 SSBOND 4 CYS A 24 CYS A 43 1555 1555 2.05 SSBOND 5 CYS B 3 CYS B 47 1555 1555 2.02 SSBOND 6 CYS B 14 CYS B 34 1555 1555 2.07 SSBOND 7 CYS B 20 CYS B 41 1555 1555 2.04 SSBOND 8 CYS B 24 CYS B 43 1555 1555 2.07 SITE 1 AC1 3 ARG A 21 ASP A 31 LYS B 28 SITE 1 AC2 4 ILE A 37 LEU A 38 ARG A 39 HOH A2075 SITE 1 AC3 4 ARG A 1 GLU A 2 HOH A2011 HOH A2017 SITE 1 AC4 1 ARG B 40 SITE 1 AC5 9 SER A 35 ILE A 37 LEU A 38 ARG A 40 SITE 2 AC5 9 HOH A2072 LYS B 36 ILE B 37 ARG B 39 SITE 3 AC5 9 HOH B2040 SITE 1 AC6 3 GLU B 27 LYS B 28 LYS B 45 CRYST1 32.697 32.685 41.977 90.00 100.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030584 0.000000 0.005851 0.00000 SCALE2 0.000000 0.030595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024255 0.00000