HEADER ANTIMICROBIAL PROTEIN 06-DEC-11 4AB0 TITLE X-RAY CRYSTAL STRUCTURE OF NICOTIANA ALATA DEFENSIN NAD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLOWER-SPECIFIC DEFENSIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 26-72; COMPND 5 SYNONYM: NAD1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA ALATA; SOURCE 3 ORGANISM_COMMON: ORNAMENTAL TOBACCO; SOURCE 4 ORGANISM_TAXID: 4087; SOURCE 5 ORGAN: FLOWER KEYWDS ANTIMICROBIAL PROTEIN, INNATE IMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR G.D.MILLS,F.T.LAY,M.D.HULETT,M.KVANSAKUL REVDAT 2 20-JUN-12 4AB0 1 JRNL REVDAT 1 25-APR-12 4AB0 0 JRNL AUTH F.T.LAY,G.D.MILLS,I.K.POON,N.P.COWIESON,N.KIRBY,A.A.BAXTER, JRNL AUTH 2 N.L.VAN DER WEERDEN,C.DOGOVSKI,M.A.PERUGINI,M.A.ANDERSON, JRNL AUTH 3 M.KVANSAKUL,M.D.HULETT JRNL TITL DIMERIZATION OF PLANT DEFENSIN NAD1 ENHANCES ITS ANTIFUNGAL JRNL TITL 2 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 287 19961 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22511788 JRNL DOI 10.1074/JBC.M111.331009 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.636 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.923 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.38 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.98 REMARK 3 NUMBER OF REFLECTIONS : 10677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2075 REMARK 3 R VALUE (WORKING SET) : 0.2064 REMARK 3 FREE R VALUE : 0.2318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9381 - 2.5974 1.00 2722 124 0.2096 0.2214 REMARK 3 2 2.5974 - 2.0616 1.00 2552 121 0.1901 0.2087 REMARK 3 3 2.0616 - 1.8010 1.00 2528 132 0.1993 0.2587 REMARK 3 4 1.8010 - 1.6363 0.96 2359 139 0.2443 0.2965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.363 REMARK 3 B_SOL : 37.817 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.27 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.4232 REMARK 3 B22 (A**2) : 5.4232 REMARK 3 B33 (A**2) : 10.1898 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 747 REMARK 3 ANGLE : 1.294 993 REMARK 3 CHIRALITY : 0.065 115 REMARK 3 PLANARITY : 0.006 124 REMARK 3 DIHEDRAL : 13.137 289 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0593 8.5458 11.7178 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.2374 REMARK 3 T33: 0.1014 T12: 0.0589 REMARK 3 T13: -0.0573 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 9.0071 L22: 4.6266 REMARK 3 L33: 2.0002 L12: 0.6877 REMARK 3 L13: 4.2140 L23: 1.0945 REMARK 3 S TENSOR REMARK 3 S11: -0.1568 S12: 0.0501 S13: -0.0583 REMARK 3 S21: -0.2108 S22: 0.1814 S23: 0.5338 REMARK 3 S31: 0.1707 S32: -0.6535 S33: -0.0282 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0500 14.4167 19.4573 REMARK 3 T TENSOR REMARK 3 T11: -0.0064 T22: 0.1118 REMARK 3 T33: 0.0808 T12: 0.0382 REMARK 3 T13: -0.0122 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.1694 L22: 0.5763 REMARK 3 L33: 1.9026 L12: 0.2278 REMARK 3 L13: -0.3425 L23: 0.8344 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0323 S13: -0.0012 REMARK 3 S21: 0.0472 S22: -0.0011 S23: 0.0003 REMARK 3 S31: 0.0125 S32: 0.0180 S33: -0.0072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 11:16) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0459 15.8473 27.9017 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1988 REMARK 3 T33: 0.1158 T12: 0.0377 REMARK 3 T13: -0.0123 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 6.0564 L22: 1.8371 REMARK 3 L33: 3.3844 L12: 0.6794 REMARK 3 L13: -2.1739 L23: -0.3714 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.2922 S13: -0.1289 REMARK 3 S21: 0.1115 S22: 0.0010 S23: -0.1164 REMARK 3 S31: 0.0944 S32: 0.1754 S33: 0.0140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 17:21) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9255 19.3692 21.5916 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0985 REMARK 3 T33: 0.1243 T12: 0.0427 REMARK 3 T13: 0.0074 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 3.6148 L22: 3.5841 REMARK 3 L33: 2.6093 L12: 0.6906 REMARK 3 L13: -1.8767 L23: -0.4066 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0206 S13: 0.1595 REMARK 3 S21: -0.0037 S22: 0.0180 S23: 0.1254 REMARK 3 S31: -0.1329 S32: -0.1500 S33: -0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 22:27) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0926 20.4732 15.5395 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.1052 REMARK 3 T33: 0.1107 T12: 0.0079 REMARK 3 T13: 0.0211 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 6.1481 L22: 2.6989 REMARK 3 L33: 4.4017 L12: -1.8924 REMARK 3 L13: -1.2101 L23: -1.2172 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.0709 S13: 0.2862 REMARK 3 S21: -0.0393 S22: 0.0317 S23: -0.0708 REMARK 3 S31: -0.2867 S32: 0.0635 S33: -0.0980 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 28:33) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4366 16.3221 13.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.1161 REMARK 3 T33: 0.0561 T12: 0.0182 REMARK 3 T13: -0.0036 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.0276 L22: 1.6598 REMARK 3 L33: 5.7498 L12: -0.9867 REMARK 3 L13: -0.8737 L23: -1.8315 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.1240 S13: 0.1329 REMARK 3 S21: -0.0285 S22: 0.0276 S23: 0.0743 REMARK 3 S31: -0.1536 S32: -0.1167 S33: -0.1052 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 34:39) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8060 7.7503 26.8493 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1174 REMARK 3 T33: 0.1221 T12: 0.0157 REMARK 3 T13: 0.0407 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 3.4052 L22: 1.1970 REMARK 3 L33: 3.9660 L12: -1.2006 REMARK 3 L13: 0.7146 L23: -1.8537 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.2731 S13: -0.3521 REMARK 3 S21: 0.2729 S22: 0.0123 S23: 0.1744 REMARK 3 S31: 0.2056 S32: -0.1568 S33: 0.0439 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 40:47) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1986 11.4553 12.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.1223 REMARK 3 T33: 0.0449 T12: 0.0958 REMARK 3 T13: -0.0610 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 0.4121 REMARK 3 L33: 4.1119 L12: 0.4246 REMARK 3 L13: 1.7749 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: 0.2250 S13: -0.0621 REMARK 3 S21: -0.2182 S22: -0.0527 S23: 0.0787 REMARK 3 S31: 0.1796 S32: 0.2530 S33: -0.0388 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7014 5.1839 10.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1330 REMARK 3 T33: 0.0992 T12: -0.0628 REMARK 3 T13: 0.0185 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.4639 L22: 4.2303 REMARK 3 L33: 5.4184 L12: 0.9092 REMARK 3 L13: -1.0856 L23: -4.4237 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.1039 S13: -0.1814 REMARK 3 S21: 0.0243 S22: 0.0813 S23: 0.1167 REMARK 3 S31: 0.1332 S32: -0.2060 S33: -0.0247 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 7:13) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0851 9.7095 -1.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.0249 REMARK 3 T33: 0.0403 T12: -0.1129 REMARK 3 T13: 0.0302 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.5631 L22: 3.6490 REMARK 3 L33: 3.1030 L12: 1.4002 REMARK 3 L13: 0.0073 L23: 1.7094 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: 0.2695 S13: 0.0794 REMARK 3 S21: -0.2646 S22: 0.0137 S23: 0.1692 REMARK 3 S31: -0.1661 S32: -0.0646 S33: 0.0874 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 14:19) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8645 0.8219 -4.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.1659 REMARK 3 T33: 0.0898 T12: -0.0598 REMARK 3 T13: -0.0060 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 2.7403 L22: 3.8927 REMARK 3 L33: 1.5731 L12: 0.5036 REMARK 3 L13: -0.6177 L23: 1.1844 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.1655 S13: -0.0128 REMARK 3 S21: -0.2464 S22: -0.0311 S23: 0.1118 REMARK 3 S31: -0.0049 S32: -0.0451 S33: -0.0016 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 20:25) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3288 0.8178 1.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0639 REMARK 3 T33: 0.1215 T12: -0.0374 REMARK 3 T13: 0.0498 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.4968 L22: 3.5319 REMARK 3 L33: 4.5639 L12: -1.2065 REMARK 3 L13: 0.9875 L23: 0.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.0395 S13: -0.2322 REMARK 3 S21: -0.0646 S22: 0.0131 S23: -0.1267 REMARK 3 S31: 0.1904 S32: 0.0304 S33: -0.0339 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 26:30) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7868 2.9250 8.1442 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.1119 REMARK 3 T33: 0.1854 T12: 0.0059 REMARK 3 T13: -0.0303 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.5822 L22: 7.7480 REMARK 3 L33: 3.7745 L12: 1.4313 REMARK 3 L13: -0.6922 L23: -2.0961 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.1378 S13: -0.0868 REMARK 3 S21: 0.0978 S22: -0.0079 S23: -0.1940 REMARK 3 S31: 0.0275 S32: 0.2098 S33: 0.0003 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 31:36) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6677 2.1517 0.8956 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.0125 REMARK 3 T33: 0.0480 T12: -0.0154 REMARK 3 T13: 0.0003 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 4.0782 L22: 1.8458 REMARK 3 L33: 2.4899 L12: 1.9364 REMARK 3 L13: 0.2223 L23: 1.6207 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0579 S13: -0.0997 REMARK 3 S21: -0.1337 S22: 0.0087 S23: 0.1606 REMARK 3 S31: 0.0555 S32: -0.0642 S33: -0.0911 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 37:41) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8466 9.4805 -1.4897 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.0822 REMARK 3 T33: 0.1489 T12: -0.0211 REMARK 3 T13: -0.0698 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.5334 L22: 3.3099 REMARK 3 L33: 3.0262 L12: -2.1500 REMARK 3 L13: 2.6334 L23: -0.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -0.1616 S13: 0.3545 REMARK 3 S21: -0.2359 S22: 0.0459 S23: 0.3367 REMARK 3 S31: -0.4333 S32: -0.2776 S33: 0.0465 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 42:47) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9208 2.4146 10.9876 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.0477 REMARK 3 T33: 0.0635 T12: -0.0695 REMARK 3 T13: -0.0403 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.5654 L22: 1.6890 REMARK 3 L33: 7.7210 L12: -0.3213 REMARK 3 L13: 0.0861 L23: -3.4560 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.2108 S13: -0.0345 REMARK 3 S21: 0.2785 S22: -0.0917 S23: -0.1742 REMARK 3 S31: -0.1176 S32: 0.1975 S33: 0.0785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-11. REMARK 100 THE PDBE ID CODE IS EBI-50222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.64 REMARK 200 RESOLUTION RANGE LOW (A) : 42.94 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.4 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.5 REMARK 200 R MERGE FOR SHELL (I) : 0.48 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: MR PERFORMED WITH ALTERNATIVE CRYSTAL FORM THAT WAS REMARK 200 SOLVED BY SIRAS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% (W/V) PEG 1500, 10% (V/V) REMARK 280 SUCCINATE-PHOSPHATE-GLYCINE BUFFER, PH 9.15 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.84667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.92333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.92333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.84667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 1 CG CD NE CZ NH1 NH2 REMARK 470 THR B 16 CA CB OG1 CG2 REMARK 470 LYS B 17 CA CB CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O A CYS A 47 O HOH A 2040 2.19 REMARK 500 O B CYS A 47 O HOH A 2040 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 46 C CYS A 47 N A 0.746 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 46 CA - C - N ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO A 46 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1048 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AAZ RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF NICOTIANA ALATA DEFENSIN 1 NAD1 DBREF 4AB0 A 1 47 UNP Q8GTM0 DEF_NICAL 26 72 DBREF 4AB0 B 1 47 UNP Q8GTM0 DEF_NICAL 26 72 SEQRES 1 A 47 ARG GLU CYS LYS THR GLU SER ASN THR PHE PRO GLY ILE SEQRES 2 A 47 CYS ILE THR LYS PRO PRO CYS ARG LYS ALA CYS ILE SER SEQRES 3 A 47 GLU LYS PHE THR ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 A 47 ARG CYS LEU CYS THR LYS PRO CYS SEQRES 1 B 47 ARG GLU CYS LYS THR GLU SER ASN THR PHE PRO GLY ILE SEQRES 2 B 47 CYS ILE THR LYS PRO PRO CYS ARG LYS ALA CYS ILE SER SEQRES 3 B 47 GLU LYS PHE THR ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 B 47 ARG CYS LEU CYS THR LYS PRO CYS HET PO4 A1048 5 HET PO4 B1048 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 HOH *76(H2 O) HELIX 1 1 THR A 16 GLU A 27 1 12 HELIX 2 2 PRO B 18 GLU B 27 1 10 SHEET 1 AA 3 CYS A 3 GLU A 6 0 SHEET 2 AA 3 CYS A 41 LYS A 45 -1 O CYS A 43 N THR A 5 SHEET 3 AA 3 ASP A 31 CYS A 34 -1 O ASP A 31 N THR A 44 SHEET 1 BA 3 GLU B 2 GLU B 6 0 SHEET 2 BA 3 CYS B 41 PRO B 46 -1 O CYS B 43 N THR B 5 SHEET 3 BA 3 ASP B 31 CYS B 34 -1 O ASP B 31 N THR B 44 SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 34 1555 1555 2.04 SSBOND 3 CYS A 20 CYS A 41 1555 1555 2.03 SSBOND 4 CYS A 24 CYS A 43 1555 1555 2.04 SSBOND 5 CYS B 3 CYS B 47 1555 1555 2.03 SSBOND 6 CYS B 14 CYS B 34 1555 1555 2.03 SSBOND 7 CYS B 20 CYS B 41 1555 1555 2.03 SSBOND 8 CYS B 24 CYS B 43 1555 1555 2.03 SITE 1 AC1 7 SER A 35 LYS A 36 ILE A 37 LEU A 38 SITE 2 AC1 7 HOH A2038 HOH A2042 ARG B 1 SITE 1 AC2 4 LYS B 22 SER B 26 HOH B2020 HOH B2034 CRYST1 33.091 33.091 128.770 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030220 0.017447 0.000000 0.00000 SCALE2 0.000000 0.034895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007766 0.00000