HEADER TRANSCRIPTION 07-DEC-11 4AB6 TITLE REGULATORY DOMAIN STRUCTURE OF NMB2055 (METR), C103S C106S MUTANT, A TITLE 2 LYSR FAMILY REGULATOR FROM N. MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LYSR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: REGULATORY DOMAIN, RESIDUES 90-309; COMPND 5 SYNONYM: NMB2055\, LYSR FAMILY; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTORS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.SAINSBURY,J.REN,N.J.SAUNDERS,D.I.STUART,R.J.OWENS REVDAT 2 08-MAY-24 4AB6 1 REMARK REVDAT 1 11-JUL-12 4AB6 0 JRNL AUTH S.SAINSBURY,J.REN,N.J.SAUNDERS,D.I.STUART,R.J.OWENS JRNL TITL STRUCTURE OF THE REGULATORY DOMAIN OF THE LYSR FAMILY JRNL TITL 2 REGULATOR NMB2055 (METR-LIKE PROTEIN) FROM NEISSERIA JRNL TITL 3 MENINGITIDIS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 730 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22750853 JRNL DOI 10.1107/S1744309112010603 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 573 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2667 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2488 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2520 REMARK 3 BIN R VALUE (WORKING SET) : 0.2469 REMARK 3 BIN FREE R VALUE : 0.2813 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.42460 REMARK 3 B22 (A**2) : -5.42460 REMARK 3 B33 (A**2) : 10.84910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.493 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.390 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3435 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4678 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1167 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 487 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3435 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 453 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3790 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.42 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 94:308 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1550 -24.6097 -48.7974 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: -0.2462 REMARK 3 T33: -0.0393 T12: -0.0567 REMARK 3 T13: 0.1859 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.6810 L22: 3.6207 REMARK 3 L33: 2.8092 L12: 1.1643 REMARK 3 L13: 1.0630 L23: 1.5607 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: 0.1917 S13: -0.3866 REMARK 3 S21: -0.6833 S22: 0.3939 S23: -0.8080 REMARK 3 S31: -0.5632 S32: 0.0796 S33: -0.3437 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESSEQ 95:307 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4542 -24.6543 -21.7927 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: -0.2818 REMARK 3 T33: -0.0664 T12: 0.0562 REMARK 3 T13: 0.0069 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 4.0508 L22: 2.7752 REMARK 3 L33: 2.2807 L12: 1.8644 REMARK 3 L13: 0.5485 L23: -0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.1865 S12: -0.1791 S13: -0.4107 REMARK 3 S21: 0.3021 S22: -0.1524 S23: -0.4763 REMARK 3 S31: -0.2166 S32: -0.0481 S33: -0.0340 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4AB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 68.43500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.51097 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.66000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 68.43500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.51097 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.66000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 68.43500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.51097 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.66000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 68.43500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.51097 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.66000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 68.43500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.51097 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.66000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 68.43500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.51097 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.66000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.02193 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.32000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 79.02193 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 85.32000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 79.02193 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 85.32000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 79.02193 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.32000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 79.02193 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 85.32000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 79.02193 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 85.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 103 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 106 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 103 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 106 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 PRO A 89 REMARK 465 THR A 90 REMARK 465 GLU A 91 REMARK 465 GLY A 92 REMARK 465 GLU A 93 REMARK 465 PHE A 132 REMARK 465 VAL A 309 REMARK 465 GLY B 88 REMARK 465 PRO B 89 REMARK 465 THR B 90 REMARK 465 GLU B 91 REMARK 465 GLY B 92 REMARK 465 GLU B 93 REMARK 465 ALA B 94 REMARK 465 GLY B 131 REMARK 465 PHE B 132 REMARK 465 GLN B 133 REMARK 465 ALA B 134 REMARK 465 PRO B 308 REMARK 465 VAL B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 201 O HOH A 2015 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 155 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 134 -54.11 -155.07 REMARK 500 ASP A 135 107.28 -164.23 REMARK 500 ALA A 153 60.01 -102.30 REMARK 500 LEU A 164 -72.47 -106.28 REMARK 500 MET A 249 -54.94 -29.34 REMARK 500 THR A 263 146.12 73.71 REMARK 500 ALA B 153 70.07 -105.39 REMARK 500 LYS B 155 75.62 140.29 REMARK 500 LEU B 164 -72.60 -105.05 REMARK 500 THR B 263 146.69 73.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AB5 RELATED DB: PDB REMARK 900 REGULATORY DOMAIN STRUCTURE OF NMB2055 (METR) A LYSR FAMILY REMARK 900 REGULATOR FROM N. MENINGITIDIS DBREF 4AB6 A 90 309 UNP Q9JXG8 Q9JXG8_NEIMB 90 309 DBREF 4AB6 B 90 309 UNP Q9JXG8 Q9JXG8_NEIMB 90 309 SEQADV 4AB6 GLY A 88 UNP Q9JXG8 EXPRESSION TAG SEQADV 4AB6 PRO A 89 UNP Q9JXG8 EXPRESSION TAG SEQADV 4AB6 SER A 103 UNP Q9JXG8 CYS 103 ENGINEERED MUTATION SEQADV 4AB6 SER A 106 UNP Q9JXG8 CYS 106 ENGINEERED MUTATION SEQADV 4AB6 GLY B 88 UNP Q9JXG8 EXPRESSION TAG SEQADV 4AB6 PRO B 89 UNP Q9JXG8 EXPRESSION TAG SEQADV 4AB6 SER B 103 UNP Q9JXG8 CYS 103 ENGINEERED MUTATION SEQADV 4AB6 SER B 106 UNP Q9JXG8 CYS 106 ENGINEERED MUTATION SEQRES 1 A 222 GLY PRO THR GLU GLY GLU ALA GLY GLU LEU ARG ILE ALA SEQRES 2 A 222 VAL GLU SER HIS THR SER PHE ASP TRP LEU MET PRO ALA SEQRES 3 A 222 MET GLY GLU PHE ARG PRO MET TRP PRO GLN VAL GLU LEU SEQRES 4 A 222 ASP ILE VAL SER GLY PHE GLN ALA ASP PRO VAL GLY LEU SEQRES 5 A 222 LEU LEU GLN HIS ARG ALA ASP LEU ALA ILE VAL SER GLU SEQRES 6 A 222 ALA GLU LYS GLN ASN GLY ILE SER PHE GLN PRO LEU PHE SEQRES 7 A 222 ALA TYR GLU MET VAL GLY ILE CYS ALA PRO ASP HIS PRO SEQRES 8 A 222 LEU ALA ALA LYS ASN VAL TRP THR ALA GLU ASP PHE ILE SEQRES 9 A 222 GLY GLU THR LEU ILE THR TYR PRO VAL PRO ASP GLU MET SEQRES 10 A 222 LEU ASP LEU PRO LYS LYS ILE LEU ILE PRO LYS ASN ILE SEQRES 11 A 222 ASN PRO PRO ARG ARG HIS SER GLU LEU THR ILE ALA ILE SEQRES 12 A 222 ILE GLN LEU VAL ALA SER ARG ARG GLY ILE ALA ALA LEU SEQRES 13 A 222 PRO TYR TRP THR VAL MET PRO TYR LEU GLU LYS GLY TYR SEQRES 14 A 222 VAL VAL HIS ARG GLN ILE THR ALA ASP GLY LEU GLN SER SEQRES 15 A 222 LYS LEU TYR ALA ALA ILE ARG THR GLU ASP THR ASP LYS SEQRES 16 A 222 SER TYR LEU ASN ASN PHE CYS GLN ILE ILE ARG GLU ARG SEQRES 17 A 222 GLY PHE ALA ASP LEU PRO GLY LEU SER GLU LEU GLU PRO SEQRES 18 A 222 VAL SEQRES 1 B 222 GLY PRO THR GLU GLY GLU ALA GLY GLU LEU ARG ILE ALA SEQRES 2 B 222 VAL GLU SER HIS THR SER PHE ASP TRP LEU MET PRO ALA SEQRES 3 B 222 MET GLY GLU PHE ARG PRO MET TRP PRO GLN VAL GLU LEU SEQRES 4 B 222 ASP ILE VAL SER GLY PHE GLN ALA ASP PRO VAL GLY LEU SEQRES 5 B 222 LEU LEU GLN HIS ARG ALA ASP LEU ALA ILE VAL SER GLU SEQRES 6 B 222 ALA GLU LYS GLN ASN GLY ILE SER PHE GLN PRO LEU PHE SEQRES 7 B 222 ALA TYR GLU MET VAL GLY ILE CYS ALA PRO ASP HIS PRO SEQRES 8 B 222 LEU ALA ALA LYS ASN VAL TRP THR ALA GLU ASP PHE ILE SEQRES 9 B 222 GLY GLU THR LEU ILE THR TYR PRO VAL PRO ASP GLU MET SEQRES 10 B 222 LEU ASP LEU PRO LYS LYS ILE LEU ILE PRO LYS ASN ILE SEQRES 11 B 222 ASN PRO PRO ARG ARG HIS SER GLU LEU THR ILE ALA ILE SEQRES 12 B 222 ILE GLN LEU VAL ALA SER ARG ARG GLY ILE ALA ALA LEU SEQRES 13 B 222 PRO TYR TRP THR VAL MET PRO TYR LEU GLU LYS GLY TYR SEQRES 14 B 222 VAL VAL HIS ARG GLN ILE THR ALA ASP GLY LEU GLN SER SEQRES 15 B 222 LYS LEU TYR ALA ALA ILE ARG THR GLU ASP THR ASP LYS SEQRES 16 B 222 SER TYR LEU ASN ASN PHE CYS GLN ILE ILE ARG GLU ARG SEQRES 17 B 222 GLY PHE ALA ASP LEU PRO GLY LEU SER GLU LEU GLU PRO SEQRES 18 B 222 VAL HET SO4 B1308 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *32(H2 O) HELIX 1 1 SER A 103 THR A 105 5 3 HELIX 2 2 SER A 106 TRP A 121 1 16 HELIX 3 3 ASP A 135 GLN A 142 1 8 HELIX 4 4 THR A 186 ILE A 191 5 6 HELIX 5 5 PRO A 201 MET A 204 5 4 HELIX 6 6 LEU A 205 ILE A 211 1 7 HELIX 7 7 LEU A 212 ASN A 216 5 5 HELIX 8 8 LEU A 226 SER A 236 1 11 HELIX 9 9 TYR A 245 GLU A 253 1 9 HELIX 10 10 GLU A 278 THR A 280 5 3 HELIX 11 11 LYS A 282 LEU A 300 1 19 HELIX 12 12 SER B 103 THR B 105 5 3 HELIX 13 13 SER B 106 TRP B 121 1 16 HELIX 14 14 ASP B 135 GLN B 142 1 8 HELIX 15 15 THR B 186 ILE B 191 5 6 HELIX 16 16 PRO B 201 MET B 204 5 4 HELIX 17 17 LEU B 205 ILE B 211 1 7 HELIX 18 18 LEU B 212 ASN B 216 5 5 HELIX 19 19 LEU B 226 SER B 236 1 11 HELIX 20 20 TYR B 245 LYS B 254 1 10 HELIX 21 21 GLU B 278 ASP B 281 5 4 HELIX 22 22 LYS B 282 LEU B 300 1 19 SHEET 1 AA 7 GLU A 125 VAL A 129 0 SHEET 2 AA 7 GLU A 96 VAL A 101 1 O LEU A 97 N ASP A 127 SHEET 3 AA 7 LEU A 147 VAL A 150 1 O LEU A 147 N ALA A 100 SHEET 4 AA 7 LEU A 267 ARG A 276 -1 O TYR A 272 N VAL A 150 SHEET 5 AA 7 ILE A 159 CYS A 173 -1 O SER A 160 N ILE A 275 SHEET 6 AA 7 VAL A 258 ILE A 262 -1 O VAL A 258 N CYS A 173 SHEET 7 AA 7 VAL A 184 TRP A 185 1 N TRP A 185 O GLN A 261 SHEET 1 AB 6 GLU A 125 VAL A 129 0 SHEET 2 AB 6 GLU A 96 VAL A 101 1 O LEU A 97 N ASP A 127 SHEET 3 AB 6 LEU A 147 VAL A 150 1 O LEU A 147 N ALA A 100 SHEET 4 AB 6 LEU A 267 ARG A 276 -1 O TYR A 272 N VAL A 150 SHEET 5 AB 6 ILE A 159 CYS A 173 -1 O SER A 160 N ILE A 275 SHEET 6 AB 6 ALA A 241 PRO A 244 -1 O ALA A 241 N ILE A 172 SHEET 1 AC 2 LEU A 303 SER A 304 0 SHEET 2 AC 2 ILE A 159 CYS A 173 -1 O ALA A 166 N SER A 304 SHEET 1 AD 6 GLU A 125 VAL A 129 0 SHEET 2 AD 6 GLU A 96 VAL A 101 1 O LEU A 97 N ASP A 127 SHEET 3 AD 6 LEU A 147 VAL A 150 1 O LEU A 147 N ALA A 100 SHEET 4 AD 6 LEU A 267 ARG A 276 -1 O TYR A 272 N VAL A 150 SHEET 5 AD 6 ILE A 159 CYS A 173 -1 O SER A 160 N ILE A 275 SHEET 6 AD 6 LEU A 303 SER A 304 -1 O SER A 304 N ALA A 166 SHEET 1 AE 2 LEU A 195 THR A 197 0 SHEET 2 AE 2 ARG A 221 HIS A 223 1 O ARG A 222 N THR A 197 SHEET 1 BA 7 GLU B 125 VAL B 129 0 SHEET 2 BA 7 GLU B 96 VAL B 101 1 O LEU B 97 N ASP B 127 SHEET 3 BA 7 LEU B 147 VAL B 150 1 O LEU B 147 N ALA B 100 SHEET 4 BA 7 LEU B 267 ARG B 276 -1 O TYR B 272 N VAL B 150 SHEET 5 BA 7 ILE B 159 CYS B 173 -1 O SER B 160 N ILE B 275 SHEET 6 BA 7 VAL B 258 ILE B 262 -1 O VAL B 258 N CYS B 173 SHEET 7 BA 7 VAL B 184 TRP B 185 1 N TRP B 185 O GLN B 261 SHEET 1 BB 6 GLU B 125 VAL B 129 0 SHEET 2 BB 6 GLU B 96 VAL B 101 1 O LEU B 97 N ASP B 127 SHEET 3 BB 6 LEU B 147 VAL B 150 1 O LEU B 147 N ALA B 100 SHEET 4 BB 6 LEU B 267 ARG B 276 -1 O TYR B 272 N VAL B 150 SHEET 5 BB 6 ILE B 159 CYS B 173 -1 O SER B 160 N ILE B 275 SHEET 6 BB 6 ALA B 241 PRO B 244 -1 O ALA B 241 N ILE B 172 SHEET 1 BC 2 LEU B 303 SER B 304 0 SHEET 2 BC 2 ILE B 159 CYS B 173 -1 O ALA B 166 N SER B 304 SHEET 1 BD 6 GLU B 125 VAL B 129 0 SHEET 2 BD 6 GLU B 96 VAL B 101 1 O LEU B 97 N ASP B 127 SHEET 3 BD 6 LEU B 147 VAL B 150 1 O LEU B 147 N ALA B 100 SHEET 4 BD 6 LEU B 267 ARG B 276 -1 O TYR B 272 N VAL B 150 SHEET 5 BD 6 ILE B 159 CYS B 173 -1 O SER B 160 N ILE B 275 SHEET 6 BD 6 LEU B 303 SER B 304 -1 O SER B 304 N ALA B 166 SHEET 1 BE 2 LEU B 195 THR B 197 0 SHEET 2 BE 2 ARG B 221 HIS B 223 1 O ARG B 222 N THR B 197 CISPEP 1 GLN A 133 ALA A 134 0 -3.05 CISPEP 2 GLU B 154 LYS B 155 0 12.18 SITE 1 AC1 4 LEU B 252 VAL B 258 HIS B 259 ARG B 260 CRYST1 136.870 136.870 127.980 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007306 0.004218 0.000000 0.00000 SCALE2 0.000000 0.008436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007814 0.00000