HEADER PROTEIN TRANSPORT 16-DEC-11 4ACL TITLE 3D STRUCTURE OF DOTU FROM FRANCISELLA NOVICIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TSSL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN, RESIDUES 1-185; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA NOVICIDA; SOURCE 3 ORGANISM_TAXID: 401614; SOURCE 4 STRAIN: U112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS PROTEIN TRANSPORT, T6SS, MICROBIAL SURFACE STRUCTURES, MEMBRANE KEYWDS 2 PROTEIN, VIRULENCE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR C.S.ROBB,F.E.NANO,A.B.BORASTON REVDAT 4 13-SEP-17 4ACL 1 REMARK REVDAT 3 05-JUL-17 4ACL 1 REMARK REVDAT 2 06-JUN-12 4ACL 1 JRNL REMARK REVDAT 1 25-APR-12 4ACL 0 JRNL AUTH C.S.ROBB,F.E.NANO,A.B.BORASTON JRNL TITL THE STRUCTURE OF THE CONSERVED TYPE SIX SECRETION PROTEIN JRNL TITL 2 TSSL (DOTU) FROM FRANCISELLA NOVICIDA JRNL REF J.MOL.BIOL. V. 419 277 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22504227 JRNL DOI 10.1016/J.JMB.2012.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 14199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 945 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05000 REMARK 3 B22 (A**2) : 2.55000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2635 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3564 ; 1.649 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;43.816 ;24.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;20.133 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1977 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 0.901 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2503 ; 1.682 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 2.183 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1060 ; 3.509 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ACL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 65.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.8, 20% PEG 3350. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.65700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 ASN A 157 REMARK 465 SER A 158 REMARK 465 THR A 159 REMARK 465 ILE A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 VAL A 163 REMARK 465 ASN A 164 REMARK 465 PHE A 165 REMARK 465 ILE A 166 REMARK 465 ASP A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 VAL A 170 REMARK 465 ASN A 171 REMARK 465 SER A 172 REMARK 465 PRO A 173 REMARK 465 PRO A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 ARG A 177 REMARK 465 LYS A 178 REMARK 465 TYR A 179 REMARK 465 SER A 180 REMARK 465 LYS A 181 REMARK 465 THR A 182 REMARK 465 LEU A 183 REMARK 465 LYS A 184 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 ASN B 157 REMARK 465 SER B 158 REMARK 465 THR B 159 REMARK 465 ILE B 160 REMARK 465 ASP B 161 REMARK 465 SER B 162 REMARK 465 VAL B 163 REMARK 465 ASN B 164 REMARK 465 PHE B 165 REMARK 465 ILE B 166 REMARK 465 ASP B 167 REMARK 465 ILE B 168 REMARK 465 PRO B 169 REMARK 465 VAL B 170 REMARK 465 ASN B 171 REMARK 465 SER B 172 REMARK 465 PRO B 173 REMARK 465 PRO B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 ARG B 177 REMARK 465 LYS B 178 REMARK 465 TYR B 179 REMARK 465 SER B 180 REMARK 465 LYS B 181 REMARK 465 THR B 182 REMARK 465 LEU B 183 REMARK 465 LYS B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 CYS A 57 SG REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 SER A 111 OG REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 HIS A 128 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG B 17 CZ NH1 NH2 REMARK 470 ASP B 22 CG OD1 OD2 REMARK 470 ASN B 23 CG OD1 ND2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 CYS B 57 SG REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ASN B 82 CG OD1 ND2 REMARK 470 SER B 111 OG REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 ILE B 114 CG1 CG2 CD1 REMARK 470 HIS B 128 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 117.08 -169.63 REMARK 500 SER A 81 146.21 -39.97 REMARK 500 ASP A 97 31.26 -99.87 REMARK 500 ASN A 113 175.97 176.26 REMARK 500 HIS A 128 -5.81 -59.68 REMARK 500 ASP B 22 109.64 -56.25 REMARK 500 ASP B 24 76.44 -105.88 REMARK 500 ALA B 80 -87.82 -81.92 REMARK 500 ASP B 97 41.87 -93.87 REMARK 500 ASN B 113 174.63 178.64 REMARK 500 GLN B 117 -31.69 -32.82 REMARK 500 LYS B 153 21.33 -75.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU B 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU A 1166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ACK RELATED DB: PDB REMARK 900 3D STRUCTURE OF DOTU FROM FRANCISELLA NOVICIDA DBREF 4ACL A 0 184 UNP A0Q7H7 A0Q7H7_FRATN 1 185 DBREF 4ACL B 0 184 UNP A0Q7H7 A0Q7H7_FRATN 1 185 SEQADV 4ACL MET A -20 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY A -19 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER A -18 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER A -17 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -16 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -15 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -14 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -13 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -12 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -11 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER A -10 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER A -9 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY A -8 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL LEU A -7 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL VAL A -6 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL PRO A -5 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL ARG A -4 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY A -3 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER A -2 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS A -1 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL MET B -20 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY B -19 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER B -18 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER B -17 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -16 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -15 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -14 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -13 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -12 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -11 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER B -10 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER B -9 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY B -8 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL LEU B -7 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL VAL B -6 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL PRO B -5 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL ARG B -4 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL GLY B -3 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL SER B -2 UNP A0Q7H7 EXPRESSION TAG SEQADV 4ACL HIS B -1 UNP A0Q7H7 EXPRESSION TAG SEQRES 1 A 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 205 LEU VAL PRO ARG GLY SER HIS MET LYS ASP PHE LYS GLU SEQRES 3 A 205 ILE GLU ILE ILE LEU ASP ILE ILE LYS THR THR ARG GLU SEQRES 4 A 205 ILE ILE GLU ASP ASN ASP ASN ASP ASN GLU LYS ILE SER SEQRES 5 A 205 TYR HIS ARG ASN ASN ILE ARG LYS SER ILE PHE PHE LEU SEQRES 6 A 205 GLN GLU GLU LEU LEU GLU LYS TYR SER GLU THR VAL CYS SEQRES 7 A 205 LYS TYR ILE VAL PHE PRO LEU LEU ALA TYR VAL ASP GLU SEQRES 8 A 205 LYS LEU MET LEU LEU ARG GLU LYS SER ALA SER ASN ILE SEQRES 9 A 205 SER TRP SER LEU LEU GLN LEU GLU TYR TYR ASP ARG LYS SEQRES 10 A 205 ASP GLY GLY GLU TYR VAL PHE GLU ILE THR ASP ASN ILE SEQRES 11 A 205 LEU SER GLU ASN ILE TYR PRO GLN ILE CYS TYR GLN THR SEQRES 12 A 205 ILE SER LEU ILE LEU HIS ASN ASP PHE TYR GLY LYS TYR SEQRES 13 A 205 TYR ASP ASN ILE TYR ASN HIS SER PHE LEU ALA TYR LYS SEQRES 14 A 205 LYS GLU ILE ASP LYS HIS ILE GLU ASN SER THR ILE ASP SEQRES 15 A 205 SER VAL ASN PHE ILE ASP ILE PRO VAL ASN SER PRO PRO SEQRES 16 A 205 LEU SER ARG LYS TYR SER LYS THR LEU LYS SEQRES 1 B 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 205 LEU VAL PRO ARG GLY SER HIS MET LYS ASP PHE LYS GLU SEQRES 3 B 205 ILE GLU ILE ILE LEU ASP ILE ILE LYS THR THR ARG GLU SEQRES 4 B 205 ILE ILE GLU ASP ASN ASP ASN ASP ASN GLU LYS ILE SER SEQRES 5 B 205 TYR HIS ARG ASN ASN ILE ARG LYS SER ILE PHE PHE LEU SEQRES 6 B 205 GLN GLU GLU LEU LEU GLU LYS TYR SER GLU THR VAL CYS SEQRES 7 B 205 LYS TYR ILE VAL PHE PRO LEU LEU ALA TYR VAL ASP GLU SEQRES 8 B 205 LYS LEU MET LEU LEU ARG GLU LYS SER ALA SER ASN ILE SEQRES 9 B 205 SER TRP SER LEU LEU GLN LEU GLU TYR TYR ASP ARG LYS SEQRES 10 B 205 ASP GLY GLY GLU TYR VAL PHE GLU ILE THR ASP ASN ILE SEQRES 11 B 205 LEU SER GLU ASN ILE TYR PRO GLN ILE CYS TYR GLN THR SEQRES 12 B 205 ILE SER LEU ILE LEU HIS ASN ASP PHE TYR GLY LYS TYR SEQRES 13 B 205 TYR ASP ASN ILE TYR ASN HIS SER PHE LEU ALA TYR LYS SEQRES 14 B 205 LYS GLU ILE ASP LYS HIS ILE GLU ASN SER THR ILE ASP SEQRES 15 B 205 SER VAL ASN PHE ILE ASP ILE PRO VAL ASN SER PRO PRO SEQRES 16 B 205 LEU SER ARG LYS TYR SER LYS THR LEU LYS HET NA A1156 1 HET EDO A1157 4 HET EDO A1158 4 HET AU A1159 1 HET AU A1160 1 HET AU A1161 1 HET AU A1162 1 HET AU A1164 1 HET AU A1166 1 HET AU B1157 1 HET AU B1158 1 HET AU B1159 1 HET AU B1160 1 HET AU B1161 1 HET AU B1162 1 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM AU GOLD ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NA NA 1+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 AU 12(AU 1+) FORMUL 18 HOH *40(H2 O) HELIX 1 1 PHE A 3 ASP A 22 1 20 HELIX 2 2 ASP A 26 TYR A 52 1 27 HELIX 3 3 SER A 53 SER A 79 1 27 HELIX 4 4 LEU A 87 ASP A 94 1 8 HELIX 5 5 ASP A 97 GLU A 112 1 16 HELIX 6 6 PRO A 116 HIS A 128 1 13 HELIX 7 7 TYR A 132 TYR A 136 5 5 HELIX 8 8 ASN A 141 LYS A 153 1 13 HELIX 9 9 LYS B 4 ASP B 22 1 19 HELIX 10 10 ASP B 26 TYR B 52 1 27 HELIX 11 11 SER B 53 LYS B 78 1 26 HELIX 12 12 LEU B 87 ASP B 94 1 8 HELIX 13 13 ASP B 97 GLU B 112 1 16 HELIX 14 14 PRO B 116 ASN B 129 1 14 HELIX 15 15 TYR B 132 TYR B 136 5 5 HELIX 16 16 ASN B 141 LYS B 153 1 13 LINK AU AU A1160 ND1 HIS A 154 1555 1555 2.56 LINK AU AU B1157 ND1 HIS B 154 1555 1555 2.78 LINK AU AU B1158 OD2 ASP B 152 1555 1555 2.74 LINK AU AU B1159 ND1 HIS B 142 1555 1555 2.19 SITE 1 AC1 4 LYS A 96 GLY A 98 GLY A 99 HOH A2018 SITE 1 AC2 5 ARG A 38 ASP A 137 ASN A 138 ILE A 139 SITE 2 AC2 5 TYR A 140 SITE 1 AC3 2 LEU A 49 CYS A 57 SITE 1 AC4 3 TYR A 120 HIS A 154 HOH A2022 SITE 1 AC5 2 LEU A 110 HIS A 154 SITE 1 AC6 2 HIS A 128 SER B 81 SITE 1 AC7 2 TYR B 120 HIS B 154 SITE 1 AC8 1 ASP B 152 SITE 1 AC9 1 HIS B 142 SITE 1 BC1 3 GLN B 45 LEU B 49 CYS B 57 SITE 1 BC2 2 HIS B 128 HOH B2011 SITE 1 BC3 1 HIS B 154 SITE 1 BC4 1 ASP A 152 CRYST1 39.309 85.314 66.989 90.00 102.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025439 0.000000 0.005584 0.00000 SCALE2 0.000000 0.011721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015283 0.00000