HEADER IMMUNE SYSTEM 19-DEC-11 4ACV TITLE LISTERIA MONOCYTOGENES ANTIGEN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPHAGE LAMBDALM01, ANTIGEN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANTIGEN B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROPHAGE LAMBDALM01, ANTIGEN B; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ANTIGEN B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 393133; SOURCE 4 STRAIN: 10403S; SOURCE 5 VARIANT: SEROVAR 1/2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 13 ORGANISM_TAXID: 393133; SOURCE 14 STRAIN: 10403S; SOURCE 15 VARIANT: SEROVAR 1/2A; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS IMMUNE SYSTEM, SURFACE, PHAGE-RELATED EXPDTA X-RAY DIFFRACTION AUTHOR J.HUYET,C.E.NAYLOR,S.GEDDES,A.K.BASAK REVDAT 2 08-MAY-24 4ACV 1 REMARK REVDAT 1 09-JAN-13 4ACV 0 JRNL AUTH J.HUYET,C.E.NAYLOR,S.GEDDES,A.K.BASAK JRNL TITL STRUCTURE OF LISTERIA MONOCYTOGENES ANTIGEN B REVEALS ITS JRNL TITL 2 RELATIONSHIP TO PHAGE TAIL PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7291 - 3.8099 1.00 2957 136 0.1743 0.1892 REMARK 3 2 3.8099 - 3.0244 1.00 2874 153 0.1781 0.2501 REMARK 3 3 3.0244 - 2.6422 1.00 2866 127 0.1907 0.2818 REMARK 3 4 2.6422 - 2.4006 1.00 2811 161 0.1935 0.2760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 53.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1874 REMARK 3 ANGLE : 0.996 2530 REMARK 3 CHIRALITY : 0.060 302 REMARK 3 PLANARITY : 0.003 318 REMARK 3 DIHEDRAL : 16.335 667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 48.2352 50.6544 18.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.1691 REMARK 3 T33: 0.2290 T12: 0.0158 REMARK 3 T13: 0.0896 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 3.4479 L22: 0.2233 REMARK 3 L33: 1.2073 L12: -0.8474 REMARK 3 L13: -0.3830 L23: 0.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.2818 S12: 0.3771 S13: 0.4036 REMARK 3 S21: -0.2980 S22: -0.1402 S23: -0.3274 REMARK 3 S31: -0.1472 S32: 0.0382 S33: -0.1392 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 58.7729 29.7998 27.7692 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1920 REMARK 3 T33: 0.2284 T12: -0.0279 REMARK 3 T13: 0.0506 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7286 L22: 1.3039 REMARK 3 L33: 2.1236 L12: -0.3387 REMARK 3 L13: -0.7954 L23: -0.6592 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.1388 S13: -0.0262 REMARK 3 S21: -0.1024 S22: -0.1320 S23: -0.3451 REMARK 3 S31: 0.1756 S32: 0.2314 S33: 0.1791 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 48:48 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 48:53 ) REMARK 3 ATOM PAIRS NUMBER : 5 REMARK 3 RMSD : 0.045 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ACV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332, 0.9792 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 86.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NA FORMATE, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 61.22800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 61.22800 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 61.22800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 61.22800 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 61.22800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 61.22800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 49 REMARK 465 SER A 50 REMARK 465 GLN A 51 REMARK 465 THR A 52 REMARK 465 ALA A 53 REMARK 465 LYS A 126 REMARK 465 VAL A 127 REMARK 465 LYS A 128 REMARK 465 ILE A 129 REMARK 465 GLU B 124 REMARK 465 LEU B 125 REMARK 465 LYS B 126 REMARK 465 VAL B 127 REMARK 465 LYS B 128 REMARK 465 ILE B 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 20 CD CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LEU B 17 O REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 LYS B 20 CD CE NZ REMARK 470 ARG B 30 CD NE CZ NH1 NH2 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 MET B 35 CG SD CE REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 55 CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 101 CE NZ REMARK 470 ASN B 108 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 14 CB ARG B 14 CG 0.292 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 14 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -115.19 57.39 REMARK 500 GLN B 51 -65.42 -16.05 REMARK 500 ALA B 53 -153.67 -152.98 REMARK 500 ASN B 108 -106.22 57.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2002 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2054 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH B2055 DISTANCE = 9.61 ANGSTROMS REMARK 525 HOH B2056 DISTANCE = 6.32 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXPRESSED PROTEIN HAD HIS-TAG WHICH WAS REMOVED. DBREF 4ACV A 1 129 UNP G2K1X0 G2K1X0_LISMO 1 129 DBREF 4ACV B 1 129 UNP G2K1X0 G2K1X0_LISMO 1 129 SEQADV 4ACV MET A 76 UNP G2K1X0 LYS 76 CONFLICT SEQADV 4ACV GLU B 18 UNP G2K1X0 GLN 18 CONFLICT SEQADV 4ACV MET B 76 UNP G2K1X0 LYS 76 CONFLICT SEQRES 1 A 129 MET LYS SER LEU SER PHE MET ARG VAL LEU GLU ALA VAL SEQRES 2 A 129 ARG THR MET LEU GLN GLU LYS GLY GLY LEU ASP VAL SER SEQRES 3 A 129 ILE VAL MET ARG ASN GLN VAL GLU MET PRO THR THR MET SEQRES 4 A 129 ILE GLU MET ILE ASP GLN GLU GLU GLU GLU SER GLN THR SEQRES 5 A 129 ALA TRP LYS GLU LYS TYR ARG PHE ALA ILE HIS HIS TYR SEQRES 6 A 129 THR ASN GLU GLN ASP LEU ALA GLY VAL GLU MET ILE ASP SEQRES 7 A 129 THR LEU ILE GLN MET GLY PHE ILE LEU PRO GLU GLY TYR SEQRES 8 A 129 LYS LEU VAL ALA VAL ARG HIS CYS GLY LYS GLN ASN LEU SEQRES 9 A 129 VAL LYS GLU ASN THR LEU ILE HIS ALA LYS THR SER PHE SEQRES 10 A 129 GLU VAL SER ILE CYS ARG GLU LEU LYS VAL LYS ILE SEQRES 1 B 129 MET LYS SER LEU SER PHE MET ARG VAL LEU GLU ALA VAL SEQRES 2 B 129 ARG THR MET LEU GLU GLU LYS GLY GLY LEU ASP VAL SER SEQRES 3 B 129 ILE VAL MET ARG ASN GLN VAL GLU MET PRO THR THR MET SEQRES 4 B 129 ILE GLU MET ILE ASP GLN GLU GLU GLU GLU SER GLN THR SEQRES 5 B 129 ALA TRP LYS GLU LYS TYR ARG PHE ALA ILE HIS HIS TYR SEQRES 6 B 129 THR ASN GLU GLN ASP LEU ALA GLY VAL GLU MET ILE ASP SEQRES 7 B 129 THR LEU ILE GLN MET GLY PHE ILE LEU PRO GLU GLY TYR SEQRES 8 B 129 LYS LEU VAL ALA VAL ARG HIS CYS GLY LYS GLN ASN LEU SEQRES 9 B 129 VAL LYS GLU ASN THR LEU ILE HIS ALA LYS THR SER PHE SEQRES 10 B 129 GLU VAL SER ILE CYS ARG GLU LEU LYS VAL LYS ILE FORMUL 3 HOH *99(H2 O) HELIX 1 1 SER A 5 GLY A 22 1 18 HELIX 2 2 ASP A 70 GLY A 84 1 15 HELIX 3 3 SER B 5 MET B 16 1 12 HELIX 4 4 ASP B 70 MET B 83 1 14 SHEET 1 AA 2 VAL A 25 SER A 26 0 SHEET 2 AA 2 THR A 37 GLU A 47 -1 O THR A 38 N SER A 26 SHEET 1 AB 8 TYR A 91 GLU A 107 0 SHEET 2 AB 8 LEU A 110 ARG A 123 -1 O LEU A 110 N GLU A 107 SHEET 3 AB 8 LYS A 55 THR A 66 -1 O GLU A 56 N ILE A 121 SHEET 4 AB 8 THR A 37 GLU A 47 -1 O THR A 37 N TYR A 65 SHEET 5 AB 8 LYS B 92 GLU B 107 -1 O HIS B 98 N GLU A 47 SHEET 6 AB 8 LEU B 110 CYS B 122 -1 O LEU B 110 N GLU B 107 SHEET 7 AB 8 LYS B 55 THR B 66 -1 O GLU B 56 N ILE B 121 SHEET 8 AB 8 THR B 37 GLU B 48 -1 O THR B 37 N TYR B 65 SHEET 1 AC 5 TYR A 91 GLU A 107 0 SHEET 2 AC 5 LEU A 110 ARG A 123 -1 O LEU A 110 N GLU A 107 SHEET 3 AC 5 LYS A 55 THR A 66 -1 O GLU A 56 N ILE A 121 SHEET 4 AC 5 THR A 37 GLU A 47 -1 O THR A 37 N TYR A 65 SHEET 5 AC 5 VAL A 25 SER A 26 -1 O SER A 26 N ILE A 40 CRYST1 122.456 122.456 122.456 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008166 0.00000 MTRIX1 1 0.650040 0.681730 -0.335690 -0.15220 1 MTRIX2 1 -0.368540 0.669160 0.645290 2.16274 1 MTRIX3 1 0.664550 -0.295750 0.686230 -2.06562 1