HEADER HYDROLASE 21-DEC-11 4ACY TITLE SELENOMETHIONINE DERIVATIVE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-ALPHA-MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.130; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 ATCC: 29148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE, ENDOMANNOSIDASE, GLYCOSIDE HYDROLASE, CAZY, ENZYME- KEYWDS 2 CARBOHYDRATE INTERACTION, MANNOSE, GLYCOSIDASE INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.THOMPSON,R.J.WILLIAMS,Z.HAKKI,D.S.ALONZI,T.WENNEKES,T.M.GLOSTER, AUTHOR 2 K.SONGSRIROTE,J.E.THOMAS-OATES,T.M.WRODNIGG,J.SPREITZ,A.E.STUETZ, AUTHOR 3 T.D.BUTTERS,S.J.WILLIAMS,G.J.DAVIES REVDAT 3 28-JUN-17 4ACY 1 REMARK REVDAT 2 07-MAR-12 4ACY 1 JRNL REVDAT 1 01-FEB-12 4ACY 0 JRNL AUTH A.J.THOMPSON,R.J.WILLIAMS,Z.HAKKI,D.S.ALONZI,T.WENNEKES, JRNL AUTH 2 T.M.GLOSTER,K.SONGSRIROTE,J.E.THOMAS-OATES,T.M.WRODNIGG, JRNL AUTH 3 J.SPREITZ,A.E.STUTZ,T.D.BUTTERS,S.J.WILLIAMS,G.J.DAVIES JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHT INTO N-GLYCAN PROCESSING JRNL TITL 2 BY ENDO-ALPHA-MANNOSIDASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 781 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22219371 JRNL DOI 10.1073/PNAS.1111482109 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0086 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 81218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5410 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : -1.09000 REMARK 3 B13 (A**2) : 0.55000 REMARK 3 B23 (A**2) : -0.42000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5697 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7763 ; 1.230 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 703 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;34.237 ;23.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;12.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4461 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2841 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3893 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 597 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5697 ; 0.010 ; 0.100 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7751 ; 0.016 ; 0.150 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ACY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290049172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX CDE, ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M NH4CL, 20% W/V PEG 3350, 0.1 M REMARK 280 MES PH 6.5, 5 MM TCEP, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 PHE A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 PHE A 13 REMARK 465 LEU A 14 REMARK 465 CYS A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 CYS A 18 REMARK 465 ASN A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 MSE A 25 REMARK 465 ASN A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 HIS A 29 REMARK 465 ASP A 30 REMARK 465 LEU A 31 REMARK 465 ASP A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 ILE A 36 REMARK 465 SER A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 VAL A 381 REMARK 465 GLN A 382 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 LEU B 5 REMARK 465 VAL B 6 REMARK 465 PHE B 7 REMARK 465 VAL B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 PHE B 13 REMARK 465 LEU B 14 REMARK 465 CYS B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 CYS B 18 REMARK 465 ASN B 19 REMARK 465 GLY B 20 REMARK 465 ASN B 21 REMARK 465 LYS B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 MSE B 25 REMARK 465 ASN B 26 REMARK 465 GLY B 27 REMARK 465 GLU B 28 REMARK 465 HIS B 29 REMARK 465 ASP B 30 REMARK 465 LEU B 31 REMARK 465 ASP B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 ASN B 35 REMARK 465 ILE B 36 REMARK 465 SER B 378 REMARK 465 GLU B 379 REMARK 465 ASP B 380 REMARK 465 VAL B 381 REMARK 465 GLN B 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 37 OG1 CG2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 HIS A 185 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 375 CG CD NE CZ NH1 NH2 REMARK 470 SER A 376 OG REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 HIS B 185 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 268 CG CD OE1 NE2 REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 SER B 376 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 231 OG SER A 265 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -38.84 71.57 REMARK 500 TYR A 248 -66.25 60.13 REMARK 500 ASN A 328 47.89 -153.58 REMARK 500 HIS B 61 -42.85 71.37 REMARK 500 TYR B 248 -64.40 59.89 REMARK 500 ASN B 328 46.78 -149.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2021 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2027 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B2121 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2140 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B2153 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1381 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AD0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTERIODES REMARK 900 THETAIOTAOMICRON IN COMPLEX WITH BIS-TRIS- PROPANE REMARK 900 RELATED ID: 4AD4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- ISOFAGOMINE AND ALPHA-1, REMARK 900 2-MANNOBIOSE REMARK 900 RELATED ID: 4AD3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- DEOXYMANNOJIRIMYCIN REMARK 900 RELATED ID: 4AD1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS REMARK 900 RELATED ID: 4AD2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- ISOFAGOMINE REMARK 900 RELATED ID: 4AD5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- DEOXYMANNOJIRIMYCIN AND REMARK 900 ALPHA-1,2-MANNOBIOSE REMARK 900 RELATED ID: 4ACZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON DBREF 4ACY A 1 382 UNP Q8A109 Q8A109_BACTN 1 382 DBREF 4ACY B 1 382 UNP Q8A109 Q8A109_BACTN 1 382 SEQRES 1 A 382 MSE ARG LYS GLU LEU VAL PHE VAL LEU LEU ALA LEU PHE SEQRES 2 A 382 LEU CYS ALA GLY CYS ASN GLY ASN LYS LYS LYS MSE ASN SEQRES 3 A 382 GLY GLU HIS ASP LEU ASP ALA ALA ASN ILE THR LEU ASP SEQRES 4 A 382 ASP HIS THR ILE SER PHE TYR TYR ASN TRP TYR GLY ASN SEQRES 5 A 382 PRO SER VAL ASP GLY GLU MSE LYS HIS TRP MSE HIS PRO SEQRES 6 A 382 ILE ALA LEU ALA PRO GLY HIS SER GLY ASP VAL GLY ALA SEQRES 7 A 382 ILE SER GLY LEU ASN ASP ASP ILE ALA CYS ASN PHE TYR SEQRES 8 A 382 PRO GLU LEU GLY THR TYR SER SER ASN ASP PRO GLU ILE SEQRES 9 A 382 ILE ARG LYS HIS ILE ARG MSE HIS ILE LYS ALA ASN VAL SEQRES 10 A 382 GLY VAL LEU SER VAL THR TRP TRP GLY GLU SER ASP TYR SEQRES 11 A 382 GLY ASN GLN SER VAL SER LEU LEU LEU ASP GLU ALA ALA SEQRES 12 A 382 LYS VAL GLY ALA LYS VAL CYS PHE HIS ILE GLU PRO PHE SEQRES 13 A 382 ASN GLY ARG SER PRO GLN THR VAL ARG GLU ASN ILE GLN SEQRES 14 A 382 TYR ILE VAL ASP THR TYR GLY ASP HIS PRO ALA PHE TYR SEQRES 15 A 382 ARG THR HIS GLY LYS PRO LEU PHE PHE ILE TYR ASP SER SEQRES 16 A 382 TYR LEU ILE LYS PRO ALA GLU TRP ALA LYS LEU PHE ALA SEQRES 17 A 382 ALA GLY GLY GLU ILE SER VAL ARG ASN THR LYS TYR ASP SEQRES 18 A 382 GLY LEU PHE ILE GLY LEU THR LEU LYS GLU SER GLU LEU SEQRES 19 A 382 PRO ASP ILE GLU THR ALA CYS MSE ASP GLY PHE TYR THR SEQRES 20 A 382 TYR PHE ALA ALA THR GLY PHE THR ASN ALA SER THR PRO SEQRES 21 A 382 ALA ASN TRP LYS SER MSE GLN GLN TRP ALA LYS ALA HIS SEQRES 22 A 382 ASN LYS LEU PHE ILE PRO SER VAL GLY PRO GLY TYR ILE SEQRES 23 A 382 ASP THR ARG ILE ARG PRO TRP ASN GLY SER THR THR ARG SEQRES 24 A 382 ASP ARG GLU ASN GLY LYS TYR TYR ASP ASP MSE TYR LYS SEQRES 25 A 382 ALA ALA ILE GLU SER GLY ALA SER TYR ILE SER ILE THR SEQRES 26 A 382 SER PHE ASN GLU TRP HIS GLU GLY THR GLN ILE GLU PRO SEQRES 27 A 382 ALA VAL SER LYS LYS CYS ASP ALA PHE GLU TYR LEU ASP SEQRES 28 A 382 TYR LYS PRO LEU ALA ASP ASP TYR TYR LEU ILE ARG THR SEQRES 29 A 382 ALA TYR TRP VAL ASP GLU PHE ARG LYS ALA ARG SER ALA SEQRES 30 A 382 SER GLU ASP VAL GLN SEQRES 1 B 382 MSE ARG LYS GLU LEU VAL PHE VAL LEU LEU ALA LEU PHE SEQRES 2 B 382 LEU CYS ALA GLY CYS ASN GLY ASN LYS LYS LYS MSE ASN SEQRES 3 B 382 GLY GLU HIS ASP LEU ASP ALA ALA ASN ILE THR LEU ASP SEQRES 4 B 382 ASP HIS THR ILE SER PHE TYR TYR ASN TRP TYR GLY ASN SEQRES 5 B 382 PRO SER VAL ASP GLY GLU MSE LYS HIS TRP MSE HIS PRO SEQRES 6 B 382 ILE ALA LEU ALA PRO GLY HIS SER GLY ASP VAL GLY ALA SEQRES 7 B 382 ILE SER GLY LEU ASN ASP ASP ILE ALA CYS ASN PHE TYR SEQRES 8 B 382 PRO GLU LEU GLY THR TYR SER SER ASN ASP PRO GLU ILE SEQRES 9 B 382 ILE ARG LYS HIS ILE ARG MSE HIS ILE LYS ALA ASN VAL SEQRES 10 B 382 GLY VAL LEU SER VAL THR TRP TRP GLY GLU SER ASP TYR SEQRES 11 B 382 GLY ASN GLN SER VAL SER LEU LEU LEU ASP GLU ALA ALA SEQRES 12 B 382 LYS VAL GLY ALA LYS VAL CYS PHE HIS ILE GLU PRO PHE SEQRES 13 B 382 ASN GLY ARG SER PRO GLN THR VAL ARG GLU ASN ILE GLN SEQRES 14 B 382 TYR ILE VAL ASP THR TYR GLY ASP HIS PRO ALA PHE TYR SEQRES 15 B 382 ARG THR HIS GLY LYS PRO LEU PHE PHE ILE TYR ASP SER SEQRES 16 B 382 TYR LEU ILE LYS PRO ALA GLU TRP ALA LYS LEU PHE ALA SEQRES 17 B 382 ALA GLY GLY GLU ILE SER VAL ARG ASN THR LYS TYR ASP SEQRES 18 B 382 GLY LEU PHE ILE GLY LEU THR LEU LYS GLU SER GLU LEU SEQRES 19 B 382 PRO ASP ILE GLU THR ALA CYS MSE ASP GLY PHE TYR THR SEQRES 20 B 382 TYR PHE ALA ALA THR GLY PHE THR ASN ALA SER THR PRO SEQRES 21 B 382 ALA ASN TRP LYS SER MSE GLN GLN TRP ALA LYS ALA HIS SEQRES 22 B 382 ASN LYS LEU PHE ILE PRO SER VAL GLY PRO GLY TYR ILE SEQRES 23 B 382 ASP THR ARG ILE ARG PRO TRP ASN GLY SER THR THR ARG SEQRES 24 B 382 ASP ARG GLU ASN GLY LYS TYR TYR ASP ASP MSE TYR LYS SEQRES 25 B 382 ALA ALA ILE GLU SER GLY ALA SER TYR ILE SER ILE THR SEQRES 26 B 382 SER PHE ASN GLU TRP HIS GLU GLY THR GLN ILE GLU PRO SEQRES 27 B 382 ALA VAL SER LYS LYS CYS ASP ALA PHE GLU TYR LEU ASP SEQRES 28 B 382 TYR LYS PRO LEU ALA ASP ASP TYR TYR LEU ILE ARG THR SEQRES 29 B 382 ALA TYR TRP VAL ASP GLU PHE ARG LYS ALA ARG SER ALA SEQRES 30 B 382 SER GLU ASP VAL GLN MODRES 4ACY MSE A 59 MET SELENOMETHIONINE MODRES 4ACY MSE A 63 MET SELENOMETHIONINE MODRES 4ACY MSE A 111 MET SELENOMETHIONINE MODRES 4ACY MSE A 242 MET SELENOMETHIONINE MODRES 4ACY MSE A 266 MET SELENOMETHIONINE MODRES 4ACY MSE A 310 MET SELENOMETHIONINE MODRES 4ACY MSE B 59 MET SELENOMETHIONINE MODRES 4ACY MSE B 63 MET SELENOMETHIONINE MODRES 4ACY MSE B 111 MET SELENOMETHIONINE MODRES 4ACY MSE B 242 MET SELENOMETHIONINE MODRES 4ACY MSE B 266 MET SELENOMETHIONINE MODRES 4ACY MSE B 310 MET SELENOMETHIONINE HET MSE A 59 8 HET MSE A 63 13 HET MSE A 111 8 HET MSE A 242 8 HET MSE A 266 8 HET MSE A 310 8 HET MSE B 59 8 HET MSE B 63 13 HET MSE B 111 8 HET MSE B 242 8 HET MSE B 266 8 HET MSE B 310 8 HET GOL A1378 6 HET GOL A1379 6 HET GOL A1380 6 HET FMT A1381 3 HET GOL B1378 6 HET GOL B1379 6 HET GOL B1380 6 HET GOL B1381 6 HET FMT B1382 3 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 GOL 7(C3 H8 O3) FORMUL 6 FMT 2(C H2 O2) FORMUL 12 HOH *652(H2 O) HELIX 1 1 ASN A 52 GLY A 57 1 6 HELIX 2 2 ASP A 101 ASN A 116 1 16 HELIX 3 3 TRP A 125 TYR A 130 5 6 HELIX 4 4 ASN A 132 VAL A 145 1 14 HELIX 5 5 SER A 160 GLY A 176 1 17 HELIX 6 6 ASP A 194 ILE A 198 5 5 HELIX 7 7 LYS A 199 ALA A 208 1 10 HELIX 8 8 LYS A 230 GLU A 233 5 4 HELIX 9 9 LEU A 234 ALA A 240 1 7 HELIX 10 10 THR A 259 ALA A 261 5 3 HELIX 11 11 ASN A 262 HIS A 273 1 12 HELIX 12 12 ASN A 294 THR A 298 5 5 HELIX 13 13 ARG A 301 ASN A 303 5 3 HELIX 14 14 GLY A 304 SER A 317 1 14 HELIX 15 15 GLU A 329 GLY A 333 5 5 HELIX 16 16 ASP A 358 ALA A 377 1 20 HELIX 17 17 ASN B 52 GLY B 57 1 6 HELIX 18 18 ASP B 101 ASN B 116 1 16 HELIX 19 19 TRP B 125 TYR B 130 5 6 HELIX 20 20 ASN B 132 VAL B 145 1 14 HELIX 21 21 SER B 160 GLY B 176 1 17 HELIX 22 22 ASP B 194 ILE B 198 5 5 HELIX 23 23 LYS B 199 ALA B 208 1 10 HELIX 24 24 LYS B 230 GLU B 233 5 4 HELIX 25 25 LEU B 234 ALA B 240 1 7 HELIX 26 26 THR B 259 ALA B 261 5 3 HELIX 27 27 ASN B 262 HIS B 273 1 12 HELIX 28 28 ASN B 294 THR B 298 5 5 HELIX 29 29 ARG B 301 ASN B 303 5 3 HELIX 30 30 GLY B 304 GLY B 318 1 15 HELIX 31 31 GLU B 329 GLY B 333 5 5 HELIX 32 32 ASP B 358 ALA B 377 1 20 SHEET 1 AA 9 LEU A 276 ILE A 278 0 SHEET 2 AA 9 GLY A 244 TYR A 246 1 O PHE A 245 N ILE A 278 SHEET 3 AA 9 LEU A 223 LEU A 227 1 O GLY A 226 N TYR A 246 SHEET 4 AA 9 LEU A 189 ILE A 192 1 O PHE A 190 N ILE A 225 SHEET 5 AA 9 LYS A 148 ILE A 153 1 O PHE A 151 N PHE A 191 SHEET 6 AA 9 VAL A 117 TRP A 124 1 O GLY A 118 N LYS A 148 SHEET 7 AA 9 ASP A 39 TYR A 46 1 O ASP A 39 N GLY A 118 SHEET 8 AA 9 ILE A 322 ILE A 324 1 O ILE A 322 N ILE A 43 SHEET 9 AA 9 SER A 280 VAL A 281 1 N VAL A 281 O SER A 323 SHEET 1 AB 2 HIS A 64 ILE A 66 0 SHEET 2 AB 2 GLY A 77 ILE A 79 -1 O GLY A 77 N ILE A 66 SHEET 1 BA 9 LEU B 276 ILE B 278 0 SHEET 2 BA 9 GLY B 244 TYR B 246 1 O PHE B 245 N ILE B 278 SHEET 3 BA 9 LEU B 223 LEU B 227 1 O GLY B 226 N TYR B 246 SHEET 4 BA 9 LEU B 189 ILE B 192 1 O PHE B 190 N ILE B 225 SHEET 5 BA 9 LYS B 148 ILE B 153 1 O PHE B 151 N PHE B 191 SHEET 6 BA 9 VAL B 117 TRP B 124 1 O GLY B 118 N LYS B 148 SHEET 7 BA 9 ASP B 39 TYR B 46 1 O ASP B 39 N GLY B 118 SHEET 8 BA 9 ILE B 322 ILE B 324 1 O ILE B 322 N ILE B 43 SHEET 9 BA 9 SER B 280 VAL B 281 1 N VAL B 281 O SER B 323 SHEET 1 BB 2 HIS B 64 ILE B 66 0 SHEET 2 BB 2 GLY B 77 ILE B 79 -1 O GLY B 77 N ILE B 66 SHEET 1 BC 2 TYR B 91 PRO B 92 0 SHEET 2 BC 2 ALA B 339 VAL B 340 -1 O VAL B 340 N TYR B 91 SHEET 1 BD 2 LYS B 343 CYS B 344 0 SHEET 2 BD 2 PHE B 347 GLU B 348 -1 O PHE B 347 N CYS B 344 LINK N MSE A 59 C GLU A 58 1555 1555 1.34 LINK C MSE A 59 N LYS A 60 1555 1555 1.33 LINK N MSE A 63 C TRP A 62 1555 1555 1.33 LINK C MSE A 63 N HIS A 64 1555 1555 1.33 LINK N MSE A 111 C ARG A 110 1555 1555 1.34 LINK C MSE A 111 N HIS A 112 1555 1555 1.33 LINK N MSE A 242 C CYS A 241 1555 1555 1.33 LINK C MSE A 242 N ASP A 243 1555 1555 1.33 LINK N MSE A 266 C SER A 265 1555 1555 1.33 LINK C MSE A 266 N GLN A 267 1555 1555 1.33 LINK N MSE A 310 C ASP A 309 1555 1555 1.33 LINK C MSE A 310 N TYR A 311 1555 1555 1.33 LINK C MSE B 59 N LYS B 60 1555 1555 1.33 LINK N MSE B 59 C GLU B 58 1555 1555 1.33 LINK C MSE B 63 N HIS B 64 1555 1555 1.33 LINK N MSE B 63 C TRP B 62 1555 1555 1.33 LINK C MSE B 111 N HIS B 112 1555 1555 1.33 LINK N MSE B 111 C ARG B 110 1555 1555 1.34 LINK C MSE B 242 N ASP B 243 1555 1555 1.33 LINK N MSE B 242 C CYS B 241 1555 1555 1.33 LINK C MSE B 266 N GLN B 267 1555 1555 1.33 LINK N MSE B 266 C SER B 265 1555 1555 1.33 LINK C MSE B 310 N TYR B 311 1555 1555 1.33 LINK N MSE B 310 C ASP B 309 1555 1555 1.33 CISPEP 1 THR A 325 SER A 326 0 8.76 CISPEP 2 LYS A 353 PRO A 354 0 6.56 CISPEP 3 THR B 325 SER B 326 0 8.79 CISPEP 4 LYS B 353 PRO B 354 0 5.84 SITE 1 AC1 7 SER A 73 GLY A 74 HIS B 64 GOL B1380 SITE 2 AC1 7 HOH B2030 HOH B2223 HOH B2261 SITE 1 AC2 9 LEU A 229 PHE A 254 THR A 255 HOH A2201 SITE 2 AC2 9 HOH A2242 HIS B 72 HOH B2043 HOH B2228 SITE 3 AC2 9 HOH B2296 SITE 1 AC3 7 HIS A 72 HOH A2053 HOH A2280 HOH A2348 SITE 2 AC3 7 HOH A2349 LEU B 229 PHE B 254 SITE 1 AC4 5 ASP A 75 TRP B 49 HIS B 61 TRP B 125 SITE 2 AC4 5 GOL B1378 SITE 1 AC5 4 HIS A 61 HOH A2352 HOH A2353 ASP B 75 SITE 1 AC6 7 LYS B 60 HIS B 61 MSE B 63 HIS B 64 SITE 2 AC6 7 PRO B 65 HOH B2031 HOH B2297 SITE 1 AC7 8 LYS A 60 HIS A 61 MSE A 63 HIS A 64 SITE 2 AC7 8 PRO A 65 HOH A2030 HOH A2036 HOH A2354 SITE 1 AC8 6 SER A 73 HOH A2059 TYR B 47 HIS B 152 SITE 2 AC8 6 GLU B 154 TYR B 193 SITE 1 AC9 5 TYR A 47 HIS A 152 GLU A 154 TYR A 193 SITE 2 AC9 5 SER B 73 CRYST1 47.721 60.002 78.666 103.45 102.59 98.59 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020955 0.003165 0.005772 0.00000 SCALE2 0.000000 0.016855 0.004817 0.00000 SCALE3 0.000000 0.000000 0.013547 0.00000