HEADER TRANSCRIPTION 04-JAN-12 4ADZ TITLE CRYSTAL STRUCTURE OF THE APO FORM OF A COPPER-SENSITIVE OPERON TITLE 2 REGULATOR (CSOR) PROTEIN FROM STREPTOMYCES LIVIDANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 1916; SOURCE 4 STRAIN: 1326; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 OTHER_DETAILS: S. LIVIDANS 66 STOCK NUMBER 1326 JOHN INNES SOURCE 11 COLLECTION KEYWDS TRANSCRIPTION, COPPER SENSOR EXPDTA X-RAY DIFFRACTION AUTHOR S.DWARAKANATH,M.A.HOUGH,J.A.R.WORRALL REVDAT 2 16-MAY-12 4ADZ 1 JRNL REVDAT 1 25-APR-12 4ADZ 0 JRNL AUTH S.DWARAKANATH,A.K.CHAPLIN,M.A.HOUGH,S.RIGALI,E.VIJGENBOOM, JRNL AUTH 2 J.A.R.WORRALL JRNL TITL THE RESPONSE TO COPPER STRESS IN STREPTOMYCES LIVIDANS JRNL TITL 2 EXTENDS BEYOND GENES UNDER THE DIRECT CONTROL OF A COPPER JRNL TITL 3 SENSITIVE OPERON REPRESSOR PROTEIN (CSOR) JRNL REF J.BIOL.CHEM. V. 287 17833 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22451651 JRNL DOI 10.1074/JBC.M112.352740 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 93.58 REMARK 3 NUMBER OF REFLECTIONS : 21048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18754 REMARK 3 R VALUE (WORKING SET) : 0.18541 REMARK 3 FREE R VALUE : 0.22858 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.700 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.744 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.279 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.359 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.031 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95 REMARK 3 B22 (A**2) : -0.52 REMARK 3 B33 (A**2) : -0.44 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1483 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1019 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2016 ; 1.663 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2472 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 4.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;34.141 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;14.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.292 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1653 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 291 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4ADZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-12. REMARK 100 THE PDBE ID CODE IS EBI-50848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 45.90 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.1 REMARK 200 R MERGE (I) : 0.058 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.8 REMARK 200 R MERGE FOR SHELL (I) : 0.28 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 M AMMONIUM SULPHATE, 0.1 M REMARK 280 SODIUM CITRATE PH 4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 20.81500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.87500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 20.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 41.63000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.75000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2030 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 GLN A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 ALA A 28 REMARK 465 ASP A 29 REMARK 465 GLY A 30 REMARK 465 THR A 31 REMARK 465 ASP A 32 REMARK 465 ILE A 33 REMARK 465 VAL A 34 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 HIS A 37 REMARK 465 ASP A 38 REMARK 465 ARG A 39 REMARK 465 GLY A 40 REMARK 465 VAL A 41 REMARK 465 HIS A 42 REMARK 465 GLY A 43 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 VAL B 15 REMARK 465 ASP B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 VAL B 19 REMARK 465 ASN B 20 REMARK 465 GLN B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 ARG B 24 REMARK 465 GLN B 25 REMARK 465 ALA B 26 REMARK 465 GLU B 27 REMARK 465 ALA B 28 REMARK 465 ASP B 29 REMARK 465 GLY B 30 REMARK 465 THR B 31 REMARK 465 ASP B 32 REMARK 465 ILE B 33 REMARK 465 VAL B 34 REMARK 465 THR B 35 REMARK 465 ASP B 36 REMARK 465 HIS B 37 REMARK 465 ASP B 38 REMARK 465 ARG B 39 REMARK 465 GLY B 40 REMARK 465 VAL B 41 REMARK 465 HIS B 42 REMARK 465 GLY B 43 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 HIS A 45 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 46 CG CD CE NZ REMARK 480 LYS A 53 CG CD CE NZ REMARK 480 ARG A 57 CD NE CZ NH1 NH2 CD NE CZ REMARK 480 ARG A 57 NH1 NH2 REMARK 480 GLN A 95 CD OE1 NE2 REMARK 480 TYR B 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 46 CG CD CE NZ REMARK 480 LYS B 53 CG CD CE NZ REMARK 480 LYS B 87 CE NZ REMARK 480 LYS B 111 CG CD CE NZ REMARK 480 GLU B 121 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 90 O HOH B 2029 2.18 REMARK 500 O1 SO4 A 1134 O HOH A 2052 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 133 O THR A 133 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 95 CG GLN A 95 CD -0.228 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS B 45 CA - CB - CG ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG B 63 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 63 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE SULPHATE MOLECULE A1137 IS MODELLED WITH HALF REMARK 600 OCCUPANCY AS IT IS CLOSE TO A SYMMETRY-RELATED POSITION REMARK 600 OF THE SAME MOLECULE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1134 REMARK 999 REMARK 999 SEQUENCE REMARK 999 S. LIVIDANS 1326 GENOME NOT SEQUENCED. HIGH SEQUENCE REMARK 999 HOMOLOGY WITH S.COELICOLOR GENOME (WWW.STREPDB. REMARK 999 STREPTOMYCES.ORG.UK). DBREF 4ADZ A 1 133 UNP D6EK73 D6EK73_STRLI 1 133 DBREF 4ADZ B 1 133 UNP D6EK73 D6EK73_STRLI 1 133 SEQADV 4ADZ GLY A -2 UNP D6EK73 EXPRESSION TAG SEQADV 4ADZ SER A -1 UNP D6EK73 EXPRESSION TAG SEQADV 4ADZ HIS A 0 UNP D6EK73 EXPRESSION TAG SEQADV 4ADZ GLY B -2 UNP D6EK73 EXPRESSION TAG SEQADV 4ADZ SER B -1 UNP D6EK73 EXPRESSION TAG SEQADV 4ADZ HIS B 0 UNP D6EK73 EXPRESSION TAG SEQRES 1 A 136 GLY SER HIS MET THR THR THR GLU ALA GLY ALA SER ALA SEQRES 2 A 136 PRO SER PRO ALA VAL ASP GLY ALA VAL ASN GLN THR ALA SEQRES 3 A 136 ARG GLN ALA GLU ALA ASP GLY THR ASP ILE VAL THR ASP SEQRES 4 A 136 HIS ASP ARG GLY VAL HIS GLY TYR HIS LYS GLN LYS ALA SEQRES 5 A 136 GLU HIS LEU LYS ARG LEU ARG ARG ILE GLU GLY GLN ILE SEQRES 6 A 136 ARG GLY LEU GLN ARG MET VAL ASP GLU ASP VAL TYR CYS SEQRES 7 A 136 ILE ASP ILE LEU THR GLN VAL SER ALA SER THR LYS ALA SEQRES 8 A 136 LEU GLN SER PHE ALA LEU GLN LEU LEU GLU GLU HIS LEU SEQRES 9 A 136 ARG HIS CYS VAL ALA ASP ALA ALA LEU LYS GLY GLY THR SEQRES 10 A 136 GLU ILE ASP ALA LYS VAL GLU GLU ALA THR LYS ALA ILE SEQRES 11 A 136 GLY ARG LEU LEU ARG THR SEQRES 1 B 136 GLY SER HIS MET THR THR THR GLU ALA GLY ALA SER ALA SEQRES 2 B 136 PRO SER PRO ALA VAL ASP GLY ALA VAL ASN GLN THR ALA SEQRES 3 B 136 ARG GLN ALA GLU ALA ASP GLY THR ASP ILE VAL THR ASP SEQRES 4 B 136 HIS ASP ARG GLY VAL HIS GLY TYR HIS LYS GLN LYS ALA SEQRES 5 B 136 GLU HIS LEU LYS ARG LEU ARG ARG ILE GLU GLY GLN ILE SEQRES 6 B 136 ARG GLY LEU GLN ARG MET VAL ASP GLU ASP VAL TYR CYS SEQRES 7 B 136 ILE ASP ILE LEU THR GLN VAL SER ALA SER THR LYS ALA SEQRES 8 B 136 LEU GLN SER PHE ALA LEU GLN LEU LEU GLU GLU HIS LEU SEQRES 9 B 136 ARG HIS CYS VAL ALA ASP ALA ALA LEU LYS GLY GLY THR SEQRES 10 B 136 GLU ILE ASP ALA LYS VAL GLU GLU ALA THR LYS ALA ILE SEQRES 11 B 136 GLY ARG LEU LEU ARG THR HET SO4 A1134 5 HET SO4 A1135 5 HET SO4 A1136 5 HET SO4 A1137 5 HET SO4 A1138 5 HET SO4 B1134 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 4 HOH *111(H2 O) HELIX 1 1 TYR A 44 GLU A 71 1 28 HELIX 2 2 TYR A 74 ARG A 132 1 59 HELIX 3 3 TYR B 44 GLU B 71 1 28 HELIX 4 4 TYR B 74 GLY B 112 1 39 HELIX 5 5 ILE B 116 THR B 133 1 18 SITE 1 AC1 7 TYR A 74 HIS A 100 HIS A 103 HOH A2021 SITE 2 AC1 7 HOH A2036 HOH A2052 HOH A2063 SITE 1 AC2 6 ARG A 63 ARG A 67 HOH A2014 ARG B 56 SITE 2 AC2 6 ARG B 63 HOH B2006 SITE 1 AC3 6 ARG A 56 ARG A 63 HOH A2007 ARG B 63 SITE 2 AC3 6 ARG B 67 HOH B2010 SITE 1 AC4 4 GLU A 59 ARG A 63 GLU B 59 ARG B 63 SITE 1 AC5 3 GLN A 47 ARG A 102 HIS A 103 SITE 1 AC6 4 HIS B 100 HIS B 103 HOH B2019 HOH B2048 CRYST1 41.630 54.550 91.750 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010899 0.00000