HEADER SIGNALING PROTEIN 08-JAN-12 4AE5 TITLE STRUCTURE OF A MAJOR REGULATOR OF STAPHYLOCOCCAL PATHOGENESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL TRANSDUCTION PROTEIN TRAP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TARGET OF RNAIII-ACTIVATING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: RN6390B; SOURCE 5 ATCC: 55620 KEYWDS SIGNALING PROTEIN, PHOSPHORYLATION, RNAIII, RAP, QUORUM SENSING, KEYWDS 2 BIOFILM, TOXIN PRODUCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.HIRSHBERG,K.HENRICK REVDAT 4 08-MAY-24 4AE5 1 REMARK REVDAT 3 08-MAY-19 4AE5 1 REMARK REVDAT 2 11-JUL-12 4AE5 1 AUTHOR JRNL REVDAT 1 04-JUL-12 4AE5 0 JRNL AUTH K.HENRICK,M.HIRSHBERG JRNL TITL STRUCTURE OF THE SIGNAL TRANSDUCTION PROTEIN TRAP (TARGET OF JRNL TITL 2 RNAIII-ACTIVATING PROTEIN). JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 744 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22750855 JRNL DOI 10.1107/S1744309112020167 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 53021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2846 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97200 REMARK 3 B22 (A**2) : -0.03200 REMARK 3 B33 (A**2) : -0.42100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.70600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5589 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7560 ; 1.851 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 7.009 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;36.655 ;23.257 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;15.477 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.562 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4410 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2393 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3750 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5598 ; 1.975 ; 1.850 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7550 ; 2.985 ; 2.730 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1886 ; 5.349 ; 5.567 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6494 ; 5.015 ; 9.009 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 2066 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6650 33.0180 14.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.0344 T22: 0.0325 REMARK 3 T33: 0.0426 T12: -0.0134 REMARK 3 T13: -0.0090 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9530 L22: 0.6290 REMARK 3 L33: 1.8619 L12: -0.0597 REMARK 3 L13: -0.2813 L23: -0.5598 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.0651 S13: -0.0491 REMARK 3 S21: 0.0781 S22: 0.0729 S23: -0.0083 REMARK 3 S31: -0.0452 S32: -0.1172 S33: 0.0162 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 2111 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0600 33.2870 39.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.0080 REMARK 3 T33: 0.0498 T12: -0.0007 REMARK 3 T13: -0.0175 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.7280 L22: 0.7000 REMARK 3 L33: 0.9792 L12: 0.1126 REMARK 3 L13: 0.1443 L23: 0.0198 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.0091 S13: -0.0149 REMARK 3 S21: 0.0202 S22: -0.0475 S23: 0.0381 REMARK 3 S31: 0.0361 S32: -0.0323 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 2024 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7940 32.0870 5.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0269 REMARK 3 T33: 0.0308 T12: -0.0218 REMARK 3 T13: 0.0164 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.6529 L22: 1.5608 REMARK 3 L33: 2.3068 L12: 0.7305 REMARK 3 L13: -1.0138 L23: 0.0493 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.1060 S13: 0.0311 REMARK 3 S21: -0.2050 S22: -0.1189 S23: 0.0489 REMARK 3 S31: -0.0514 S32: 0.0816 S33: -0.0334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 2061 REMARK 3 ORIGIN FOR THE GROUP (A): 52.3980 31.8540 48.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0995 REMARK 3 T33: 0.0520 T12: 0.0309 REMARK 3 T13: 0.0166 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.5607 L22: 0.5731 REMARK 3 L33: 1.2704 L12: -0.3321 REMARK 3 L13: -0.4192 L23: 0.2185 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.1115 S13: 0.1089 REMARK 3 S21: -0.1256 S22: -0.0161 S23: 0.0113 REMARK 3 S31: 0.0235 S32: 0.1675 S33: 0.2391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. REMARK 4 REMARK 4 4AE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290050888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.66 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2445 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 74.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.09 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, 18 DEGREES CELCIUS, 18% REMARK 280 PEG 4K, 0.050 M NACIT PH 5.66, 1% PEG 500 MME, PROTEIN IN DROP REMARK 280 4.4MG/ML DROP 1:1, CRYOPROTECTANT USED: 20% PEG 4K, 0.050 M NA REMARK 280 CITRATE PH 5.66, 1% PEG 500 MME, 35% PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.43400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 GLN A 153 REMARK 465 HIS A 154 REMARK 465 SER A 155 REMARK 465 GLU A 167 REMARK 465 SER B 150 REMARK 465 SER B 151 REMARK 465 GLY B 152 REMARK 465 LYS B 166 REMARK 465 GLU B 167 REMARK 465 MET C 1 REMARK 465 GLY C 149 REMARK 465 SER C 150 REMARK 465 SER C 151 REMARK 465 GLY C 152 REMARK 465 GLN C 153 REMARK 465 HIS C 154 REMARK 465 SER C 155 REMARK 465 GLU C 167 REMARK 465 MET D 1 REMARK 465 GLY D 149 REMARK 465 SER D 150 REMARK 465 SER D 151 REMARK 465 GLY D 152 REMARK 465 GLN D 153 REMARK 465 HIS D 154 REMARK 465 GLU D 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 49 CB OG REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 GLY A 149 CA C O REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS B 48 CE NZ REMARK 470 GLY B 149 CA C O REMARK 470 ASP C 91 CG OD1 OD2 REMARK 470 ASN C 93 CG OD1 ND2 REMARK 470 ARG C 95 CG CD NE CZ NH1 NH2 REMARK 470 SER C 156 CB OG REMARK 470 LYS C 166 CG CD CE NZ REMARK 470 ASP D 91 CG OD1 OD2 REMARK 470 SER D 155 N CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 146 CG HIS A 146 CD2 0.056 REMARK 500 MET B 1 N MET B 1 CA 0.122 REMARK 500 HIS B 65 CG HIS B 65 CD2 0.055 REMARK 500 HIS C 124 CG HIS C 124 CD2 0.057 REMARK 500 HIS D 66 CG HIS D 66 CD2 0.071 REMARK 500 HIS D 124 CG HIS D 124 CD2 0.056 REMARK 500 HIS D 124 CG HIS D 124 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT C 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1000 DBREF 4AE5 A 1 167 UNP Q7A4W3 TRAP_STAAN 1 167 DBREF 4AE5 B 1 167 UNP Q7A4W3 TRAP_STAAN 1 167 DBREF 4AE5 C 1 167 UNP Q7A4W3 TRAP_STAAN 1 167 DBREF 4AE5 D 1 167 UNP Q7A4W3 TRAP_STAAN 1 167 SEQRES 1 A 167 MET LYS LYS LEU TYR THR SER TYR GLY THR TYR GLY PHE SEQRES 2 A 167 LEU HIS GLN ILE LYS ILE ASN ASN PRO THR HIS GLN LEU SEQRES 3 A 167 PHE GLN PHE SER ALA SER ASP THR SER VAL ILE PHE GLU SEQRES 4 A 167 GLU THR ASP GLY GLU THR VAL LEU LYS SER PRO SER ILE SEQRES 5 A 167 TYR GLU VAL ILE LYS GLU ILE GLY GLU PHE SER GLU HIS SEQRES 6 A 167 HIS PHE TYR CYS ALA ILE PHE ILE PRO SER THR GLU ASP SEQRES 7 A 167 HIS ALA TYR GLN LEU GLU LYS LYS LEU ILE SER VAL ASP SEQRES 8 A 167 ASP ASN PHE ARG ASN PHE GLY GLY PHE LYS SER TYR ARG SEQRES 9 A 167 LEU LEU ARG PRO ALA LYS GLY THR THR TYR LYS ILE TYR SEQRES 10 A 167 PHE GLY PHE ALA ASP ARG HIS ALA TYR GLU ASP PHE LYS SEQRES 11 A 167 GLN SER ASP ALA PHE ASN ASP HIS PHE SER LYS ASP ALA SEQRES 12 A 167 LEU SER HIS TYR PHE GLY SER SER GLY GLN HIS SER SER SEQRES 13 A 167 TYR PHE GLU ARG TYR LEU TYR PRO ILE LYS GLU SEQRES 1 B 167 MET LYS LYS LEU TYR THR SER TYR GLY THR TYR GLY PHE SEQRES 2 B 167 LEU HIS GLN ILE LYS ILE ASN ASN PRO THR HIS GLN LEU SEQRES 3 B 167 PHE GLN PHE SER ALA SER ASP THR SER VAL ILE PHE GLU SEQRES 4 B 167 GLU THR ASP GLY GLU THR VAL LEU LYS SER PRO SER ILE SEQRES 5 B 167 TYR GLU VAL ILE LYS GLU ILE GLY GLU PHE SER GLU HIS SEQRES 6 B 167 HIS PHE TYR CYS ALA ILE PHE ILE PRO SER THR GLU ASP SEQRES 7 B 167 HIS ALA TYR GLN LEU GLU LYS LYS LEU ILE SER VAL ASP SEQRES 8 B 167 ASP ASN PHE ARG ASN PHE GLY GLY PHE LYS SER TYR ARG SEQRES 9 B 167 LEU LEU ARG PRO ALA LYS GLY THR THR TYR LYS ILE TYR SEQRES 10 B 167 PHE GLY PHE ALA ASP ARG HIS ALA TYR GLU ASP PHE LYS SEQRES 11 B 167 GLN SER ASP ALA PHE ASN ASP HIS PHE SER LYS ASP ALA SEQRES 12 B 167 LEU SER HIS TYR PHE GLY SER SER GLY GLN HIS SER SER SEQRES 13 B 167 TYR PHE GLU ARG TYR LEU TYR PRO ILE LYS GLU SEQRES 1 C 167 MET LYS LYS LEU TYR THR SER TYR GLY THR TYR GLY PHE SEQRES 2 C 167 LEU HIS GLN ILE LYS ILE ASN ASN PRO THR HIS GLN LEU SEQRES 3 C 167 PHE GLN PHE SER ALA SER ASP THR SER VAL ILE PHE GLU SEQRES 4 C 167 GLU THR ASP GLY GLU THR VAL LEU LYS SER PRO SER ILE SEQRES 5 C 167 TYR GLU VAL ILE LYS GLU ILE GLY GLU PHE SER GLU HIS SEQRES 6 C 167 HIS PHE TYR CYS ALA ILE PHE ILE PRO SER THR GLU ASP SEQRES 7 C 167 HIS ALA TYR GLN LEU GLU LYS LYS LEU ILE SER VAL ASP SEQRES 8 C 167 ASP ASN PHE ARG ASN PHE GLY GLY PHE LYS SER TYR ARG SEQRES 9 C 167 LEU LEU ARG PRO ALA LYS GLY THR THR TYR LYS ILE TYR SEQRES 10 C 167 PHE GLY PHE ALA ASP ARG HIS ALA TYR GLU ASP PHE LYS SEQRES 11 C 167 GLN SER ASP ALA PHE ASN ASP HIS PHE SER LYS ASP ALA SEQRES 12 C 167 LEU SER HIS TYR PHE GLY SER SER GLY GLN HIS SER SER SEQRES 13 C 167 TYR PHE GLU ARG TYR LEU TYR PRO ILE LYS GLU SEQRES 1 D 167 MET LYS LYS LEU TYR THR SER TYR GLY THR TYR GLY PHE SEQRES 2 D 167 LEU HIS GLN ILE LYS ILE ASN ASN PRO THR HIS GLN LEU SEQRES 3 D 167 PHE GLN PHE SER ALA SER ASP THR SER VAL ILE PHE GLU SEQRES 4 D 167 GLU THR ASP GLY GLU THR VAL LEU LYS SER PRO SER ILE SEQRES 5 D 167 TYR GLU VAL ILE LYS GLU ILE GLY GLU PHE SER GLU HIS SEQRES 6 D 167 HIS PHE TYR CYS ALA ILE PHE ILE PRO SER THR GLU ASP SEQRES 7 D 167 HIS ALA TYR GLN LEU GLU LYS LYS LEU ILE SER VAL ASP SEQRES 8 D 167 ASP ASN PHE ARG ASN PHE GLY GLY PHE LYS SER TYR ARG SEQRES 9 D 167 LEU LEU ARG PRO ALA LYS GLY THR THR TYR LYS ILE TYR SEQRES 10 D 167 PHE GLY PHE ALA ASP ARG HIS ALA TYR GLU ASP PHE LYS SEQRES 11 D 167 GLN SER ASP ALA PHE ASN ASP HIS PHE SER LYS ASP ALA SEQRES 12 D 167 LEU SER HIS TYR PHE GLY SER SER GLY GLN HIS SER SER SEQRES 13 D 167 TYR PHE GLU ARG TYR LEU TYR PRO ILE LYS GLU HET FMT A1000 3 HET FMT B1000 3 HET FMT C1000 3 HET FMT D1000 3 HETNAM FMT FORMIC ACID FORMUL 5 FMT 4(C H2 O2) FORMUL 9 HOH *262(H2 O) HELIX 1 1 THR A 10 ASN A 21 1 12 HELIX 2 2 HIS A 79 SER A 89 1 11 HELIX 3 3 ASP A 91 PHE A 97 5 7 HELIX 4 4 ASP A 122 SER A 132 1 11 HELIX 5 5 SER A 132 ASP A 137 1 6 HELIX 6 6 SER A 140 SER A 145 1 6 HELIX 7 7 HIS A 146 PHE A 148 5 3 HELIX 8 8 THR B 10 ASN B 21 1 12 HELIX 9 9 HIS B 79 SER B 89 1 11 HELIX 10 10 ASP B 91 PHE B 97 5 7 HELIX 11 11 ASP B 122 GLN B 131 1 10 HELIX 12 12 SER B 132 ASP B 137 1 6 HELIX 13 13 SER B 140 SER B 145 1 6 HELIX 14 14 HIS B 146 PHE B 148 5 3 HELIX 15 15 THR C 10 ASN C 21 1 12 HELIX 16 16 THR C 76 ASP C 78 5 3 HELIX 17 17 HIS C 79 VAL C 90 1 12 HELIX 18 18 ASP C 91 PHE C 97 5 7 HELIX 19 19 ASP C 122 GLN C 131 1 10 HELIX 20 20 SER C 132 ASP C 137 1 6 HELIX 21 21 SER C 140 SER C 145 1 6 HELIX 22 22 HIS C 146 PHE C 148 5 3 HELIX 23 23 THR D 10 ASN D 21 1 12 HELIX 24 24 THR D 76 SER D 89 1 14 HELIX 25 25 ASN D 93 PHE D 97 5 5 HELIX 26 26 ASP D 122 GLN D 131 1 10 HELIX 27 27 SER D 132 ASP D 137 1 6 HELIX 28 28 SER D 140 SER D 145 1 6 HELIX 29 29 HIS D 146 PHE D 148 5 3 SHEET 1 AA 9 LYS A 3 GLY A 9 0 SHEET 2 AA 9 SER A 35 THR A 41 -1 O SER A 35 N GLY A 9 SHEET 3 AA 9 PHE A 27 SER A 30 -1 O PHE A 27 N PHE A 38 SHEET 4 AA 9 PHE A 158 PRO A 164 -1 O TYR A 163 N SER A 30 SHEET 5 AA 9 PHE A 67 ILE A 73 -1 O TYR A 68 N LEU A 162 SHEET 6 AA 9 TYR A 114 PHE A 120 -1 O TYR A 114 N ILE A 73 SHEET 7 AA 9 PHE A 100 PRO A 108 -1 N LYS A 101 O GLY A 119 SHEET 8 AA 9 SER A 51 ILE A 59 -1 O GLU A 54 N ARG A 107 SHEET 9 AA 9 LYS A 3 GLY A 9 -1 O LEU A 4 N TYR A 53 SHEET 1 BA 9 LYS B 3 GLY B 9 0 SHEET 2 BA 9 SER B 35 THR B 41 -1 O SER B 35 N GLY B 9 SHEET 3 BA 9 PHE B 27 SER B 30 -1 O PHE B 27 N PHE B 38 SHEET 4 BA 9 PHE B 158 PRO B 164 -1 O TYR B 163 N SER B 30 SHEET 5 BA 9 PHE B 67 PRO B 74 -1 O TYR B 68 N LEU B 162 SHEET 6 BA 9 THR B 113 PHE B 120 -1 O TYR B 114 N ILE B 73 SHEET 7 BA 9 PHE B 100 PRO B 108 -1 N LYS B 101 O GLY B 119 SHEET 8 BA 9 SER B 51 ILE B 59 -1 O GLU B 54 N ARG B 107 SHEET 9 BA 9 LYS B 3 GLY B 9 -1 O LEU B 4 N TYR B 53 SHEET 1 CA 8 PHE C 27 ALA C 31 0 SHEET 2 CA 8 THR C 34 THR C 41 -1 O THR C 34 N ALA C 31 SHEET 3 CA 8 LYS C 3 GLY C 9 -1 O LYS C 3 N THR C 41 SHEET 4 CA 8 SER C 51 ILE C 59 -1 O SER C 51 N THR C 6 SHEET 5 CA 8 PHE C 100 PRO C 108 -1 O TYR C 103 N ILE C 59 SHEET 6 CA 8 TYR C 114 PHE C 120 -1 O LYS C 115 N LEU C 106 SHEET 7 CA 8 PHE C 67 ILE C 73 -1 O PHE C 67 N PHE C 120 SHEET 8 CA 8 PHE C 158 LEU C 162 -1 O PHE C 158 N PHE C 72 SHEET 1 DA 8 PHE D 27 ALA D 31 0 SHEET 2 DA 8 THR D 34 THR D 41 -1 O THR D 34 N ALA D 31 SHEET 3 DA 8 LYS D 3 GLY D 9 -1 O LYS D 3 N THR D 41 SHEET 4 DA 8 SER D 51 ILE D 59 -1 O SER D 51 N THR D 6 SHEET 5 DA 8 PHE D 100 PRO D 108 -1 O TYR D 103 N ILE D 59 SHEET 6 DA 8 TYR D 114 PHE D 120 -1 O LYS D 115 N LEU D 106 SHEET 7 DA 8 PHE D 67 ILE D 73 -1 O PHE D 67 N PHE D 120 SHEET 8 DA 8 PHE D 158 LEU D 162 -1 O PHE D 158 N PHE D 72 SITE 1 AC1 6 TYR A 8 ALA A 70 PHE A 72 LYS A 115 SITE 2 AC1 6 TYR A 117 ARG A 160 SITE 1 AC2 5 TYR B 8 PHE B 72 LYS B 115 TYR B 117 SITE 2 AC2 5 ARG B 160 SITE 1 AC3 7 THR C 6 TYR C 8 ALA C 70 PHE C 72 SITE 2 AC3 7 LYS C 115 TYR C 117 ARG C 160 SITE 1 AC4 7 THR D 6 TYR D 8 ALA D 70 PHE D 72 SITE 2 AC4 7 LYS D 115 TYR D 117 ARG D 160 CRYST1 69.076 70.868 79.082 90.00 111.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014477 0.000000 0.005711 0.00000 SCALE2 0.000000 0.014111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013594 0.00000