HEADER HYDROLASE 09-JAN-12 4AE8 TITLE CRYSTAL STRUCTURE OF HUMAN THEM4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE SUPERFAMILY MEMBER 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 37-240; COMPND 5 SYNONYM: CARBOXYL-TERMINAL MODULATOR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS HYDROLASE, HOTDOG-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR E.ZHURAVLEVA,H.GUT,D.HYNX,D.MARCELLIN,C.K.E.BLECK,C.GENOUD,P.CRON, AUTHOR 2 J.J.KEUSCH,B.DUMMLER,M.DEGLI ESPOSTI,B.A.HEMMINGS REVDAT 1 11-JUL-12 4AE8 0 JRNL AUTH E.ZHURAVLEVA,H.GUT,D.HYNX,D.MARCELLIN,C.K.E.BLECK,C.GENOUD, JRNL AUTH 2 P.CRON,J.J.KEUSCH,B.DUMMLER,M.D.ESPOSTI,B.A.HEMMINGS JRNL TITL ACYL COENZYME A THIOESTERASE THEM5/ACOT15 IS INVOLVED IN JRNL TITL 2 CARDIOLIPIN REMODELING AND FATTY LIVER DEVELOPMENT. JRNL REF MOL.CELL.BIOL. V. 32 2685 2012 JRNL REFN ISSN 0270-7306 JRNL PMID 22586271 JRNL DOI 10.1128/MCB.00312-12 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.594 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.720 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.98 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.39 REMARK 3 NUMBER OF REFLECTIONS : 83488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1867 REMARK 3 R VALUE (WORKING SET) : 0.1848 REMARK 3 FREE R VALUE : 0.2228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 4113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7250 - 4.8904 0.97 2842 149 0.2046 0.2226 REMARK 3 2 4.8904 - 3.8844 0.97 2806 159 0.1456 0.1629 REMARK 3 3 3.8844 - 3.3942 0.97 2866 140 0.1559 0.1934 REMARK 3 4 3.3942 - 3.0842 0.97 2833 164 0.1696 0.1965 REMARK 3 5 3.0842 - 2.8634 0.96 2840 125 0.1858 0.2197 REMARK 3 6 2.8634 - 2.6947 0.96 2786 154 0.1809 0.2266 REMARK 3 7 2.6947 - 2.5598 0.96 2836 138 0.1777 0.2205 REMARK 3 8 2.5598 - 2.4484 0.96 2816 142 0.1921 0.2420 REMARK 3 9 2.4484 - 2.3542 0.95 2815 126 0.1867 0.2067 REMARK 3 10 2.3542 - 2.2730 0.95 2747 158 0.1793 0.2414 REMARK 3 11 2.2730 - 2.2019 0.95 2774 146 0.1836 0.2231 REMARK 3 12 2.2019 - 2.1390 0.95 2780 150 0.1848 0.2576 REMARK 3 13 2.1390 - 2.0827 0.95 2794 143 0.1913 0.2172 REMARK 3 14 2.0827 - 2.0319 0.95 2797 151 0.1953 0.2394 REMARK 3 15 2.0319 - 1.9857 0.95 2804 124 0.1918 0.2408 REMARK 3 16 1.9857 - 1.9435 0.95 2742 140 0.1978 0.2306 REMARK 3 17 1.9435 - 1.9046 0.94 2833 158 0.1925 0.2496 REMARK 3 18 1.9046 - 1.8687 0.95 2769 151 0.1982 0.2333 REMARK 3 19 1.8687 - 1.8353 0.95 2764 139 0.1985 0.2526 REMARK 3 20 1.8353 - 1.8042 0.95 2797 150 0.2066 0.2608 REMARK 3 21 1.8042 - 1.7751 0.94 2748 156 0.2075 0.2534 REMARK 3 22 1.7751 - 1.7478 0.94 2746 141 0.2095 0.3040 REMARK 3 23 1.7478 - 1.7221 0.94 2763 153 0.2173 0.2601 REMARK 3 24 1.7221 - 1.6978 0.93 2750 131 0.2185 0.2877 REMARK 3 25 1.6978 - 1.6749 0.91 2664 117 0.2218 0.2408 REMARK 3 26 1.6749 - 1.6531 0.91 2683 141 0.2264 0.2652 REMARK 3 27 1.6531 - 1.6325 0.88 2548 140 0.2467 0.3032 REMARK 3 28 1.6325 - 1.6128 0.84 2461 133 0.2357 0.2890 REMARK 3 29 1.6128 - 1.5941 0.67 1971 94 0.2524 0.2950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.361 REMARK 3 B_SOL : 42.575 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.43 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.7986 REMARK 3 B22 (A**2) : -0.8757 REMARK 3 B33 (A**2) : -0.9229 REMARK 3 B12 (A**2) : -3.2491 REMARK 3 B13 (A**2) : -3.2969 REMARK 3 B23 (A**2) : -0.2947 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5452 REMARK 3 ANGLE : 1.023 7355 REMARK 3 CHIRALITY : 0.073 792 REMARK 3 PLANARITY : 0.005 947 REMARK 3 DIHEDRAL : 12.253 2045 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR B REMARK 3 ORIGIN FOR THE GROUP (A): 21.3571 -18.5941 9.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0756 REMARK 3 T33: 0.0670 T12: 0.0198 REMARK 3 T13: 0.0061 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.9356 L22: 0.8879 REMARK 3 L33: 0.1999 L12: 0.5324 REMARK 3 L13: -0.0591 L23: -0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0538 S13: -0.0527 REMARK 3 S21: 0.0212 S22: -0.0261 S23: -0.1161 REMARK 3 S31: 0.0182 S32: 0.0147 S33: -0.0073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C OR D REMARK 3 ORIGIN FOR THE GROUP (A): 42.3985 3.7362 41.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0927 REMARK 3 T33: 0.0611 T12: -0.0043 REMARK 3 T13: -0.0042 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.3817 L22: 1.3062 REMARK 3 L33: 0.2569 L12: 0.1895 REMARK 3 L13: 0.0419 L23: 0.0862 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0190 S13: 0.0449 REMARK 3 S21: -0.0808 S22: -0.0179 S23: 0.1259 REMARK 3 S31: 0.0130 S32: -0.0409 S33: 0.0048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-12. REMARK 100 THE PDBE ID CODE IS EBI-50890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX 225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 1.9 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.7 REMARK 200 R MERGE FOR SHELL (I) : 0.22 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3000, 0.2M NACL, 0.1M REMARK 280 TRIS PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 HIS A 32 REMARK 465 MET A 33 REMARK 465 SER A 34 REMARK 465 GLY A 35 REMARK 465 ARG A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 VAL A 41 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 PRO A 83 REMARK 465 THR A 84 REMARK 465 GLU A 85 REMARK 465 TRP A 86 REMARK 465 ILE A 87 REMARK 465 GLN A 88 REMARK 465 ASP A 89 REMARK 465 PHE A 90 REMARK 465 LYS A 91 REMARK 465 THR A 92 REMARK 465 HIS A 93 REMARK 465 PHE A 94 REMARK 465 LEU A 95 REMARK 465 ASP A 96 REMARK 465 PRO A 97 REMARK 465 LYS A 98 REMARK 465 LEU A 99 REMARK 465 MET A 100 REMARK 465 LYS A 101 REMARK 465 GLU A 102 REMARK 465 GLU A 103 REMARK 465 GLN A 104 REMARK 465 MET A 105 REMARK 465 SER A 106 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 LYS A 237 REMARK 465 SER A 238 REMARK 465 LEU A 239 REMARK 465 THR A 240 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 HIS B 32 REMARK 465 MET B 33 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 ARG B 36 REMARK 465 SER B 37 REMARK 465 SER B 38 REMARK 465 GLU B 39 REMARK 465 GLU B 40 REMARK 465 VAL B 41 REMARK 465 ILE B 42 REMARK 465 ARG B 81 REMARK 465 THR B 82 REMARK 465 PRO B 83 REMARK 465 THR B 84 REMARK 465 GLU B 85 REMARK 465 TRP B 86 REMARK 465 ILE B 87 REMARK 465 GLN B 88 REMARK 465 ASP B 89 REMARK 465 PHE B 90 REMARK 465 LYS B 91 REMARK 465 THR B 92 REMARK 465 HIS B 93 REMARK 465 PHE B 94 REMARK 465 LEU B 95 REMARK 465 ASP B 96 REMARK 465 PRO B 97 REMARK 465 LYS B 98 REMARK 465 LEU B 99 REMARK 465 MET B 100 REMARK 465 LYS B 101 REMARK 465 GLU B 102 REMARK 465 GLU B 103 REMARK 465 GLN B 104 REMARK 465 MET B 105 REMARK 465 ASN B 234 REMARK 465 PRO B 235 REMARK 465 ALA B 236 REMARK 465 LYS B 237 REMARK 465 SER B 238 REMARK 465 LEU B 239 REMARK 465 THR B 240 REMARK 465 GLY C 30 REMARK 465 ALA C 31 REMARK 465 HIS C 32 REMARK 465 MET C 33 REMARK 465 SER C 34 REMARK 465 GLY C 35 REMARK 465 ARG C 36 REMARK 465 SER C 37 REMARK 465 SER C 38 REMARK 465 GLU C 39 REMARK 465 GLU C 40 REMARK 465 VAL C 41 REMARK 465 ILE C 42 REMARK 465 PRO C 83 REMARK 465 THR C 84 REMARK 465 GLU C 85 REMARK 465 TRP C 86 REMARK 465 ILE C 87 REMARK 465 GLN C 88 REMARK 465 ASP C 89 REMARK 465 PHE C 90 REMARK 465 LYS C 91 REMARK 465 THR C 92 REMARK 465 HIS C 93 REMARK 465 PHE C 94 REMARK 465 LEU C 95 REMARK 465 ASP C 96 REMARK 465 PRO C 97 REMARK 465 LYS C 98 REMARK 465 LEU C 99 REMARK 465 MET C 100 REMARK 465 LYS C 101 REMARK 465 GLU C 102 REMARK 465 GLU C 103 REMARK 465 GLN C 104 REMARK 465 MET C 105 REMARK 465 ASN C 234 REMARK 465 PRO C 235 REMARK 465 ALA C 236 REMARK 465 LYS C 237 REMARK 465 SER C 238 REMARK 465 LEU C 239 REMARK 465 THR C 240 REMARK 465 GLY D 30 REMARK 465 ALA D 31 REMARK 465 HIS D 32 REMARK 465 MET D 33 REMARK 465 SER D 34 REMARK 465 GLY D 35 REMARK 465 ARG D 36 REMARK 465 SER D 37 REMARK 465 SER D 38 REMARK 465 GLU D 39 REMARK 465 GLU D 40 REMARK 465 VAL D 41 REMARK 465 ILE D 42 REMARK 465 LYS D 80 REMARK 465 ARG D 81 REMARK 465 THR D 82 REMARK 465 PRO D 83 REMARK 465 THR D 84 REMARK 465 GLU D 85 REMARK 465 TRP D 86 REMARK 465 ILE D 87 REMARK 465 GLN D 88 REMARK 465 ASP D 89 REMARK 465 PHE D 90 REMARK 465 LYS D 91 REMARK 465 THR D 92 REMARK 465 HIS D 93 REMARK 465 PHE D 94 REMARK 465 LEU D 95 REMARK 465 ASP D 96 REMARK 465 PRO D 97 REMARK 465 LYS D 98 REMARK 465 LEU D 99 REMARK 465 MET D 100 REMARK 465 LYS D 101 REMARK 465 GLU D 102 REMARK 465 GLU D 103 REMARK 465 GLN D 104 REMARK 465 MET D 105 REMARK 465 SER D 106 REMARK 465 PRO D 235 REMARK 465 ALA D 236 REMARK 465 LYS D 237 REMARK 465 SER D 238 REMARK 465 LEU D 239 REMARK 465 THR D 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 129 O HOH B 2101 1.94 REMARK 500 OE1 GLU D 69 O HOH D 2042 2.10 REMARK 500 O HOH A 2006 O HOH A 2102 2.20 REMARK 500 O HOH A 2015 O HOH A 2026 2.12 REMARK 500 O HOH A 2060 O HOH A 2089 2.02 REMARK 500 O HOH A 2073 O HOH A 2074 1.96 REMARK 500 O HOH A 2078 O HOH A 2089 2.08 REMARK 500 O HOH A 2083 O HOH A 2118 2.17 REMARK 500 O HOH A 2096 O HOH A 2120 2.15 REMARK 500 O HOH A 2110 O HOH A 2111 2.04 REMARK 500 O HOH A 2113 O HOH A 2167 2.15 REMARK 500 O HOH A 2116 O HOH A 2176 2.10 REMARK 500 O HOH A 2118 O HOH A 2119 2.16 REMARK 500 O HOH A 2125 O HOH A 2196 2.05 REMARK 500 O HOH A 2173 O HOH A 2176 2.06 REMARK 500 O HOH B 2002 O HOH B 2011 1.89 REMARK 500 O HOH B 2051 O HOH B 2063 1.82 REMARK 500 O HOH B 2090 O HOH B 2123 2.14 REMARK 500 O HOH C 2057 O HOH B 2094 2.12 REMARK 500 O HOH C 2090 O HOH C 2091 2.07 REMARK 500 O HOH D 2006 O HOH D 2072 2.17 REMARK 500 O HOH D 2017 O HOH B 2053 2.03 REMARK 500 O HOH D 2054 O HOH D 2063 1.94 REMARK 500 O HOH D 2063 O HOH C 2071 2.13 REMARK 500 O HOH D 2087 O HOH D 2088 2.12 REMARK 500 O HOH D 2094 O HOH D 2095 2.10 REMARK 500 O HOH D 2170 O HOH D 2171 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 220 O HOH D 2144 2554 2.20 REMARK 500 NZ LYS D 232 O HOH B 2173 2556 2.10 REMARK 500 O HOH A 2016 O HOH C 2050 2545 2.13 REMARK 500 O HOH A 2026 O HOH C 2049 2545 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 49.42 -92.04 REMARK 500 SER B 47 34.35 -98.18 REMARK 500 GLU B 219 -1.10 72.62 REMARK 500 SER C 47 31.52 -94.83 REMARK 500 SER D 47 48.55 -92.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 4AE8 A 37 240 UNP Q5T1C6 THEM4_HUMAN 37 240 DBREF 4AE8 B 37 240 UNP Q5T1C6 THEM4_HUMAN 37 240 DBREF 4AE8 C 37 240 UNP Q5T1C6 THEM4_HUMAN 37 240 DBREF 4AE8 D 37 240 UNP Q5T1C6 THEM4_HUMAN 37 240 SEQRES 1 A 211 GLY ALA HIS MET SER GLY ARG SER SER GLU GLU VAL ILE SEQRES 2 A 211 LEU LYS ASP CYS SER VAL PRO ASN PRO SER TRP ASN LYS SEQRES 3 A 211 ASP LEU ARG LEU LEU PHE ASP GLN PHE MET LYS LYS CYS SEQRES 4 A 211 GLU ASP GLY SER TRP LYS ARG LEU PRO SER TYR LYS ARG SEQRES 5 A 211 THR PRO THR GLU TRP ILE GLN ASP PHE LYS THR HIS PHE SEQRES 6 A 211 LEU ASP PRO LYS LEU MET LYS GLU GLU GLN MET SER GLN SEQRES 7 A 211 ALA GLN LEU PHE THR ARG SER PHE ASP ASP GLY LEU GLY SEQRES 8 A 211 PHE GLU TYR VAL MET PHE TYR ASN ASP ILE GLU LYS ARG SEQRES 9 A 211 MET VAL CYS LEU PHE GLN GLY GLY PRO TYR LEU GLU GLY SEQRES 10 A 211 PRO PRO GLY PHE ILE HIS GLY GLY ALA ILE ALA THR MET SEQRES 11 A 211 ILE ASP ALA THR VAL GLY MET CYS ALA MET MET ALA GLY SEQRES 12 A 211 GLY ILE VAL MET THR ALA ASN LEU ASN ILE ASN TYR LYS SEQRES 13 A 211 ARG PRO ILE PRO LEU CYS SER VAL VAL MET ILE ASN SER SEQRES 14 A 211 GLN LEU ASP LYS VAL GLU GLY ARG LYS PHE PHE VAL SER SEQRES 15 A 211 CYS ASN VAL GLN SER VAL ASP GLU LYS THR LEU TYR SER SEQRES 16 A 211 GLU ALA THR SER LEU PHE ILE LYS LEU ASN PRO ALA LYS SEQRES 17 A 211 SER LEU THR SEQRES 1 B 211 GLY ALA HIS MET SER GLY ARG SER SER GLU GLU VAL ILE SEQRES 2 B 211 LEU LYS ASP CYS SER VAL PRO ASN PRO SER TRP ASN LYS SEQRES 3 B 211 ASP LEU ARG LEU LEU PHE ASP GLN PHE MET LYS LYS CYS SEQRES 4 B 211 GLU ASP GLY SER TRP LYS ARG LEU PRO SER TYR LYS ARG SEQRES 5 B 211 THR PRO THR GLU TRP ILE GLN ASP PHE LYS THR HIS PHE SEQRES 6 B 211 LEU ASP PRO LYS LEU MET LYS GLU GLU GLN MET SER GLN SEQRES 7 B 211 ALA GLN LEU PHE THR ARG SER PHE ASP ASP GLY LEU GLY SEQRES 8 B 211 PHE GLU TYR VAL MET PHE TYR ASN ASP ILE GLU LYS ARG SEQRES 9 B 211 MET VAL CYS LEU PHE GLN GLY GLY PRO TYR LEU GLU GLY SEQRES 10 B 211 PRO PRO GLY PHE ILE HIS GLY GLY ALA ILE ALA THR MET SEQRES 11 B 211 ILE ASP ALA THR VAL GLY MET CYS ALA MET MET ALA GLY SEQRES 12 B 211 GLY ILE VAL MET THR ALA ASN LEU ASN ILE ASN TYR LYS SEQRES 13 B 211 ARG PRO ILE PRO LEU CYS SER VAL VAL MET ILE ASN SER SEQRES 14 B 211 GLN LEU ASP LYS VAL GLU GLY ARG LYS PHE PHE VAL SER SEQRES 15 B 211 CYS ASN VAL GLN SER VAL ASP GLU LYS THR LEU TYR SER SEQRES 16 B 211 GLU ALA THR SER LEU PHE ILE LYS LEU ASN PRO ALA LYS SEQRES 17 B 211 SER LEU THR SEQRES 1 C 211 GLY ALA HIS MET SER GLY ARG SER SER GLU GLU VAL ILE SEQRES 2 C 211 LEU LYS ASP CYS SER VAL PRO ASN PRO SER TRP ASN LYS SEQRES 3 C 211 ASP LEU ARG LEU LEU PHE ASP GLN PHE MET LYS LYS CYS SEQRES 4 C 211 GLU ASP GLY SER TRP LYS ARG LEU PRO SER TYR LYS ARG SEQRES 5 C 211 THR PRO THR GLU TRP ILE GLN ASP PHE LYS THR HIS PHE SEQRES 6 C 211 LEU ASP PRO LYS LEU MET LYS GLU GLU GLN MET SER GLN SEQRES 7 C 211 ALA GLN LEU PHE THR ARG SER PHE ASP ASP GLY LEU GLY SEQRES 8 C 211 PHE GLU TYR VAL MET PHE TYR ASN ASP ILE GLU LYS ARG SEQRES 9 C 211 MET VAL CYS LEU PHE GLN GLY GLY PRO TYR LEU GLU GLY SEQRES 10 C 211 PRO PRO GLY PHE ILE HIS GLY GLY ALA ILE ALA THR MET SEQRES 11 C 211 ILE ASP ALA THR VAL GLY MET CYS ALA MET MET ALA GLY SEQRES 12 C 211 GLY ILE VAL MET THR ALA ASN LEU ASN ILE ASN TYR LYS SEQRES 13 C 211 ARG PRO ILE PRO LEU CYS SER VAL VAL MET ILE ASN SER SEQRES 14 C 211 GLN LEU ASP LYS VAL GLU GLY ARG LYS PHE PHE VAL SER SEQRES 15 C 211 CYS ASN VAL GLN SER VAL ASP GLU LYS THR LEU TYR SER SEQRES 16 C 211 GLU ALA THR SER LEU PHE ILE LYS LEU ASN PRO ALA LYS SEQRES 17 C 211 SER LEU THR SEQRES 1 D 211 GLY ALA HIS MET SER GLY ARG SER SER GLU GLU VAL ILE SEQRES 2 D 211 LEU LYS ASP CYS SER VAL PRO ASN PRO SER TRP ASN LYS SEQRES 3 D 211 ASP LEU ARG LEU LEU PHE ASP GLN PHE MET LYS LYS CYS SEQRES 4 D 211 GLU ASP GLY SER TRP LYS ARG LEU PRO SER TYR LYS ARG SEQRES 5 D 211 THR PRO THR GLU TRP ILE GLN ASP PHE LYS THR HIS PHE SEQRES 6 D 211 LEU ASP PRO LYS LEU MET LYS GLU GLU GLN MET SER GLN SEQRES 7 D 211 ALA GLN LEU PHE THR ARG SER PHE ASP ASP GLY LEU GLY SEQRES 8 D 211 PHE GLU TYR VAL MET PHE TYR ASN ASP ILE GLU LYS ARG SEQRES 9 D 211 MET VAL CYS LEU PHE GLN GLY GLY PRO TYR LEU GLU GLY SEQRES 10 D 211 PRO PRO GLY PHE ILE HIS GLY GLY ALA ILE ALA THR MET SEQRES 11 D 211 ILE ASP ALA THR VAL GLY MET CYS ALA MET MET ALA GLY SEQRES 12 D 211 GLY ILE VAL MET THR ALA ASN LEU ASN ILE ASN TYR LYS SEQRES 13 D 211 ARG PRO ILE PRO LEU CYS SER VAL VAL MET ILE ASN SER SEQRES 14 D 211 GLN LEU ASP LYS VAL GLU GLY ARG LYS PHE PHE VAL SER SEQRES 15 D 211 CYS ASN VAL GLN SER VAL ASP GLU LYS THR LEU TYR SER SEQRES 16 D 211 GLU ALA THR SER LEU PHE ILE LYS LEU ASN PRO ALA LYS SEQRES 17 D 211 SER LEU THR FORMUL 5 HOH *751(H2 O) HELIX 1 1 ASN A 54 CYS A 68 1 15 HELIX 2 2 PHE A 111 SER A 114 5 4 HELIX 3 3 PRO A 142 LEU A 144 5 3 HELIX 4 4 HIS A 152 GLY A 173 1 22 HELIX 5 5 ASN B 54 CYS B 68 1 15 HELIX 6 6 GLU B 69 GLY B 71 5 3 HELIX 7 7 PHE B 111 SER B 114 5 4 HELIX 8 8 PRO B 142 LEU B 144 5 3 HELIX 9 9 HIS B 152 GLY B 173 1 22 HELIX 10 10 ASN C 54 GLU C 69 1 16 HELIX 11 11 PHE C 111 SER C 114 5 4 HELIX 12 12 PRO C 142 LEU C 144 5 3 HELIX 13 13 HIS C 152 GLY C 173 1 22 HELIX 14 14 ASN D 54 CYS D 68 1 15 HELIX 15 15 PHE D 111 SER D 114 5 4 HELIX 16 16 PRO D 142 LEU D 144 5 3 HELIX 17 17 HIS D 152 GLY D 173 1 22 SHEET 1 AA 2 LYS A 44 ASP A 45 0 SHEET 2 AA 2 TYR A 79 LYS A 80 -1 O LYS A 80 N LYS A 44 SHEET 1 AB14 TRP A 73 LEU A 76 0 SHEET 2 AB14 PHE A 121 ASN A 128 -1 O MET A 125 N LEU A 76 SHEET 3 AB14 ARG A 133 GLY A 140 -1 O ARG A 133 N ASN A 128 SHEET 4 AB14 VAL A 193 GLU A 204 -1 O VAL A 194 N PHE A 138 SHEET 5 AB14 LYS A 207 SER A 216 -1 O LYS A 207 N GLU A 204 SHEET 6 AB14 LEU A 222 LYS A 232 -1 N TYR A 223 O VAL A 214 SHEET 7 AB14 VAL A 175 TYR A 184 -1 O MET A 176 N ILE A 231 SHEET 8 AB14 VAL B 175 TYR B 184 -1 O ALA B 178 N TYR A 184 SHEET 9 AB14 LEU B 222 LYS B 232 -1 O GLU B 225 N ASN B 183 SHEET 10 AB14 LYS B 207 SER B 216 -1 O PHE B 208 N PHE B 230 SHEET 11 AB14 VAL B 193 GLU B 204 -1 O MET B 195 N GLN B 215 SHEET 12 AB14 ARG B 133 GLY B 140 -1 O MET B 134 N SER B 198 SHEET 13 AB14 PHE B 121 ASN B 128 -1 O GLU B 122 N GLN B 139 SHEET 14 AB14 LYS B 74 LEU B 76 -1 O LYS B 74 N TYR B 127 SHEET 1 BA 2 LYS B 44 ASP B 45 0 SHEET 2 BA 2 TYR B 79 LYS B 80 -1 O LYS B 80 N LYS B 44 SHEET 1 CA 2 LYS C 44 ASP C 45 0 SHEET 2 CA 2 TYR C 79 LYS C 80 -1 O LYS C 80 N LYS C 44 SHEET 1 CB14 LYS C 74 LEU C 76 0 SHEET 2 CB14 PHE C 121 ASN C 128 -1 O MET C 125 N LEU C 76 SHEET 3 CB14 ARG C 133 GLY C 140 -1 O ARG C 133 N ASN C 128 SHEET 4 CB14 VAL C 193 GLU C 204 -1 O VAL C 194 N PHE C 138 SHEET 5 CB14 LYS C 207 SER C 216 -1 O LYS C 207 N GLU C 204 SHEET 6 CB14 LEU C 222 ILE C 231 -1 N TYR C 223 O VAL C 214 SHEET 7 CB14 MET C 176 TYR C 184 -1 O MET C 176 N ILE C 231 SHEET 8 CB14 VAL D 175 TYR D 184 -1 O ALA D 178 N TYR C 184 SHEET 9 CB14 LEU D 222 LYS D 232 -1 O GLU D 225 N ASN D 183 SHEET 10 CB14 LYS D 207 SER D 216 -1 O PHE D 208 N PHE D 230 SHEET 11 CB14 VAL D 193 GLU D 204 -1 O MET D 195 N GLN D 215 SHEET 12 CB14 ARG D 133 GLY D 140 -1 O MET D 134 N SER D 198 SHEET 13 CB14 PHE D 121 ASN D 128 -1 O GLU D 122 N GLN D 139 SHEET 14 CB14 LYS D 74 LEU D 76 -1 O LYS D 74 N TYR D 127 CRYST1 50.539 58.211 69.681 89.96 71.14 64.60 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019787 -0.009395 -0.008385 0.00000 SCALE2 0.000000 0.019017 0.003110 0.00000 SCALE3 0.000000 0.000000 0.015367 0.00000 MTRIX1 1 -0.181000 -0.938300 0.294500 5.00900 1 MTRIX2 1 -0.935600 0.072060 -0.345600 6.25800 1 MTRIX3 1 0.303100 -0.338100 -0.891000 5.96600 1 MTRIX1 2 -0.613800 -0.734200 -0.290200 62.40000 1 MTRIX2 2 0.642600 -0.678200 0.356600 -58.26000 1 MTRIX3 2 -0.458600 0.032330 0.888000 -8.17800 1 MTRIX1 3 -0.633500 0.773700 0.005155 45.27000 1 MTRIX2 3 0.773700 0.633500 -0.002555 -53.63000 1 MTRIX3 3 -0.005242 0.002370 -1.000000 52.11000 1