HEADER CELL ADHESION 18-JAN-12 4AFA TITLE CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A TITLE 2 DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL CAVEAT 4AFA GLC B 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPA1P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271; COMPND 5 SYNONYM: EPITHELIAL ADHESIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: SUB-TYPE SWITCHED EPA1A VARIANT WHICH EMULATES THE COMPND 9 BINDING POCKET OF EPA3A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_TAXID: 5478; SOURCE 4 STRAIN: CBS138; SOURCE 5 ATCC: 2001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS (C3029); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL ADHESION, LECTIN, TISSUE INVASION, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG,V.KALUGIN, AUTHOR 2 S.BRUECKNER,P.KELLER,S.RUPP,H.-U.MOESCH,L.-O.ESSEN REVDAT 5 01-MAY-24 4AFA 1 REMARK HETSYN REVDAT 4 29-JUL-20 4AFA 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 05-JUL-17 4AFA 1 REMARK REVDAT 2 31-OCT-12 4AFA 1 JRNL REVDAT 1 17-OCT-12 4AFA 0 JRNL AUTH M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG, JRNL AUTH 2 V.KALUGIN,S.BRUCKNER,P.KELLER,S.RUPP,H.MOSCH,L.ESSEN JRNL TITL STRUCTURAL BASIS FOR PROMISCUITY AND SPECIFICITY DURING JRNL TITL 2 CANDIDA GLABRATA INVASION OF HOST EPITHELIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16864 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23035251 JRNL DOI 10.1073/PNAS.1207653109 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 16152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1987 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1334 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2715 ; 1.296 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3236 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;29.939 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;12.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.277 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2236 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 442 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 1.240 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 473 ; 0.340 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1907 ; 1.899 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 807 ; 1.338 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 800 ; 2.138 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4AFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290050745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: EPA1A WILD TYPE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.02000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.02000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.57500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.28000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.02000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.57500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.28000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.02000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2054 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2060 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2100 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 227 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 228 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 229 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ILE A 36 REMARK 465 SER A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 TYR A 268 REMARK 465 ASP A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 THR A 55 OG1 CG2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 SER A 267 CA C O CB OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 134 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 134 CG - CD - CE ANGL. DEV. = -23.0 DEGREES REMARK 500 LYS A 134 CD - CE - NZ ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -148.63 -87.03 REMARK 500 ASP A 227 146.92 -176.19 REMARK 500 ASP A 227 147.63 -176.19 REMARK 500 ASN A 228 -140.07 57.79 REMARK 500 ASN A 228 -142.01 61.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 B-D-GALACTOSE (GAL): GAL BINDS GLC TO FORM GALB1-3GLC. REMARK 600 ALPHA-D-GLUCOSE (GLC): GAL BINDS GLC TO FORM GALB1-3GLC. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1267 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD1 REMARK 620 2 ASP A 165 OD2 84.2 REMARK 620 3 ASN A 225 OD1 116.3 68.3 REMARK 620 4 ASP A 227 O 163.6 109.5 78.1 REMARK 620 5 ASN A 229 O 86.8 139.3 80.7 88.1 REMARK 620 6 GAL B 2 O4 72.9 133.1 158.6 90.8 80.7 REMARK 620 7 GAL B 2 O3 92.0 72.8 128.0 83.9 147.2 67.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A3X RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) REMARK 900 FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM REMARK 900 AND LACTOSE REMARK 900 RELATED ID: 4AF9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN ( EPA1A) FROM REMARK 900 CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLC REMARK 900 RELATED ID: 4AFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A REMARK 900 DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 4AFC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A REMARK 900 DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC REMARK 900 RELATED ID: 4ASL RELATED DB: PDB REMARK 900 STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN ( GAL-B1-3-GALNAC) REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q6VBJ0 CORRESPONDS TO THE FULL EPA1A DBREF 4AFA A 31 271 UNP Q6VBJ0 Q6VBJ0_CANGB 31 271 SEQADV 4AFA MET A 10 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA GLY A 11 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA SER A 12 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA SER A 13 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 14 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 15 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 16 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 17 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 18 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 19 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA SER A 20 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA SER A 21 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA GLY A 22 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA LEU A 23 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA VAL A 24 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA PRO A 25 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA ARG A 26 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA GLY A 27 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA SER A 28 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA HIS A 29 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA MET A 30 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AFA ASP A 227 UNP Q6VBJ0 GLU 227 ENGINEERED MUTATION SEQADV 4AFA ASN A 228 UNP Q6VBJ0 TYR 228 ENGINEERED MUTATION SEQADV 4AFA ASN A 229 UNP Q6VBJ0 ASP 229 ENGINEERED MUTATION SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET THR SER SER ASN ASP SEQRES 3 A 262 ILE SER LEU ALA SER LYS ASP PRO THR THR PHE PRO LEU SEQRES 4 A 262 GLY CYS SER PRO ASP ILE THR THR PRO LYS LYS GLY LEU SEQRES 5 A 262 SER MET GLU LEU TYR SER TYR ASP PHE ARG LYS LYS GLY SEQRES 6 A 262 SER TYR PRO CYS TRP ASP ALA ALA TYR LEU ASP PRO ASN SEQRES 7 A 262 TYR PRO ARG THR GLY TYR LYS SER HIS ARG LEU LEU ALA SEQRES 8 A 262 LYS VAL ASP GLY VAL THR GLY ASN ILE ASN PHE TYR TYR SEQRES 9 A 262 HIS ALA THR LYS GLY CYS THR PRO GLN LEU GLY HIS LEU SEQRES 10 A 262 PRO ALA SER TYR ASN TYR PRO LYS PRO LEU THR MET THR SEQRES 11 A 262 ASN PHE THR MET LEU LEU TYR GLY TYR PHE ARG PRO LYS SEQRES 12 A 262 VAL THR GLY PHE HIS THR PHE THR ILE SER ALA ASP ASP SEQRES 13 A 262 LEU LEU PHE VAL ASN PHE GLY ALA GLY ASN ALA PHE ASP SEQRES 14 A 262 CYS CYS ARG ARG ASP SER SER ALA ASP HIS PHE GLY ASN SEQRES 15 A 262 TYR GLN ALA TYR ALA ILE TRP GLY SER LYS THR ALA LYS SEQRES 16 A 262 ASP GLU LEU THR VAL HIS LEU ASP ALA GLY VAL TYR TYR SEQRES 17 A 262 PRO ILE ARG LEU PHE TYR ASN ASN ARG ASP ASN ASN GLY SEQRES 18 A 262 ALA LEU SER PHE THR PHE LYS THR GLU SER ASN GLU ASN SEQRES 19 A 262 THR VAL SER ASP PHE SER GLU TYR PHE PHE SER LEU ASP SEQRES 20 A 262 ASP THR GLU GLU GLY CYS PRO GLY LEU ILE SER TYR ASP SEQRES 21 A 262 SER SER HET GLC B 1 12 HET GAL B 2 11 HET CA A1267 1 HET PEG A1268 10 HET GOL A1269 6 HET GOL A1270 6 HET GOL A1273 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 PEG C4 H10 O3 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *177(H2 O) HELIX 1 1 ASP A 80 ASP A 85 5 6 HELIX 2 2 THR A 91 HIS A 96 5 6 HELIX 3 3 PRO A 127 ASN A 131 5 5 HELIX 4 4 ARG A 181 ALA A 186 1 6 SHEET 1 AA 6 LYS A 58 LYS A 59 0 SHEET 2 AA 6 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA 6 PHE A 141 PHE A 149 1 O TYR A 148 N PHE A 253 SHEET 4 AA 6 TYR A 217 ASN A 225 -1 O TYR A 217 N PHE A 149 SHEET 5 AA 6 LEU A 166 PHE A 171 -1 O LEU A 166 N ASN A 224 SHEET 6 AA 6 ALA A 194 ILE A 197 -1 O ALA A 194 N VAL A 169 SHEET 1 AB 5 LYS A 58 LYS A 59 0 SHEET 2 AB 5 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AB 5 PHE A 141 PHE A 149 1 O TYR A 148 N PHE A 253 SHEET 4 AB 5 LEU A 61 SER A 67 -1 O SER A 62 N TYR A 146 SHEET 5 AB 5 LEU A 98 VAL A 105 -1 N LEU A 99 O LEU A 65 SHEET 1 AC 4 PHE A 111 TYR A 113 0 SHEET 2 AC 4 GLY A 230 THR A 238 -1 O GLY A 230 N TYR A 113 SHEET 3 AC 4 GLY A 155 ASP A 164 -1 O THR A 158 N LYS A 237 SHEET 4 AC 4 LYS A 204 LEU A 211 -1 O ASP A 205 N ILE A 161 SHEET 1 AD 2 LEU A 123 GLY A 124 0 SHEET 2 AD 2 LEU A 136 THR A 137 -1 O LEU A 136 N GLY A 124 SSBOND 1 CYS A 50 CYS A 179 1555 1555 2.03 SSBOND 2 CYS A 78 CYS A 119 1555 1555 2.02 SSBOND 3 CYS A 180 CYS A 262 1555 1555 2.04 LINK O3 GLC B 1 C1 GAL B 2 1555 1555 1.45 LINK OD1 ASP A 164 CA CA A1267 1555 1555 2.25 LINK OD2 ASP A 165 CA CA A1267 1555 1555 2.63 LINK OD1 ASN A 225 CA CA A1267 1555 1555 2.32 LINK O ASP A 227 CA CA A1267 1555 1555 2.32 LINK O ASN A 229 CA CA A1267 1555 1555 2.31 LINK CA CA A1267 O4 GAL B 2 1555 1555 2.33 LINK CA CA A1267 O3 GAL B 2 1555 1555 2.33 CISPEP 1 TYR A 76 PRO A 77 0 -8.53 CISPEP 2 ASP A 164 ASP A 165 0 10.03 CRYST1 74.560 104.040 69.150 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014461 0.00000