HEADER SIGNALING PROTEIN 19-JAN-12 4AFF TITLE HIGH RESOLUTION STRUCTURE OF A PII MUTANT (I86N) PROTEIN IN COMPLEX TITLE 2 WITH ATP, MG AND FLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PII SIGNAL TRANSDUCING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: IBA KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,O.FOKINA,V.R.CHELLAMUTHU,K.FORCHHAMMER REVDAT 3 15-AUG-12 4AFF 1 JRNL REVDAT 2 25-JUL-12 4AFF 1 AUTHOR JRNL REVDAT 1 01-FEB-12 4AFF 0 JRNL AUTH K.ZETH,O.FOKINA,K.FORCHHAMMER JRNL TITL AN ENGINEERED PII PROTEIN VARIANT THAT SENSES A NOVEL JRNL TITL 2 LIGAND: ATOMIC RESOLUTION STRUCTURE OF THE COMPLEX WITH JRNL TITL 3 CITRATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 901 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22868755 JRNL DOI 10.1107/S0907444912016447 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 137 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.1 REMARK 3 COMPLETENESS FOR RANGE (%) : 99 REMARK 3 NUMBER OF REFLECTIONS : 49582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.13 REMARK 3 R VALUE (WORKING SET) : 0.12 REMARK 3 FREE R VALUE : 0.14 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.0 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.077 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98 REMARK 3 BIN R VALUE (WORKING SET) : 0.25 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.26 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05 REMARK 3 B22 (A**2) : 0.05 REMARK 3 B33 (A**2) : -0.07 REMARK 3 B12 (A**2) : 0.02 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.98 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.97 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1012 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 700 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1387 ; 2.428 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1739 ; 1.259 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 7.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;37.427 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;14.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1110 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 187 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 187 ; 0.005 ; 0.020 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 249 ; 0.833 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 995 ; 3.238 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 408 ; 4.913 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 379 ; 6.790 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4500 26.7720 25.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0600 REMARK 3 T33: 0.0311 T12: 0.0044 REMARK 3 T13: -0.0055 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.0142 L22: 0.5974 REMARK 3 L33: 3.2475 L12: -0.5774 REMARK 3 L13: -2.6588 L23: 0.7096 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.0107 S13: 0.0423 REMARK 3 S21: 0.0036 S22: 0.0215 S23: -0.0114 REMARK 3 S31: 0.0131 S32: -0.0182 S33: -0.0663 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7890 17.1570 19.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0368 REMARK 3 T33: 0.0489 T12: -0.0159 REMARK 3 T13: -0.0005 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.8434 L22: 0.7399 REMARK 3 L33: 1.8388 L12: -0.3016 REMARK 3 L13: -1.4048 L23: 0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.1613 S12: 0.1813 S13: -0.1676 REMARK 3 S21: 0.0018 S22: 0.0515 S23: 0.0612 REMARK 3 S31: 0.2156 S32: -0.1395 S33: 0.1098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7300 30.4170 17.1040 REMARK 3 T TENSOR REMARK 3 T11: 0.0246 T22: 0.0545 REMARK 3 T33: 0.0343 T12: 0.0143 REMARK 3 T13: 0.0045 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.4964 L22: 0.1444 REMARK 3 L33: 0.9455 L12: 0.5035 REMARK 3 L13: -1.0756 L23: -0.3533 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.0837 S13: 0.0242 REMARK 3 S21: -0.0020 S22: 0.0441 S23: -0.0049 REMARK 3 S31: -0.0478 S32: -0.1086 S33: -0.0742 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3300 33.0820 12.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0492 REMARK 3 T33: 0.0447 T12: 0.0032 REMARK 3 T13: 0.0177 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.8550 L22: 0.9782 REMARK 3 L33: 1.7241 L12: 0.7718 REMARK 3 L13: -1.4198 L23: -0.5904 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0984 S13: 0.0204 REMARK 3 S21: -0.1121 S22: 0.0531 S23: -0.0635 REMARK 3 S31: -0.0842 S32: 0.0806 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3220 22.3030 27.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0431 REMARK 3 T33: 0.0295 T12: 0.0040 REMARK 3 T13: 0.0037 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0153 L22: 0.2333 REMARK 3 L33: 0.7345 L12: -0.2178 REMARK 3 L13: -0.7799 L23: 0.1688 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.0160 S13: -0.0355 REMARK 3 S21: 0.0317 S22: 0.0247 S23: 0.0024 REMARK 3 S31: 0.1149 S32: -0.0140 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8700 29.1350 30.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0489 REMARK 3 T33: 0.0338 T12: -0.0148 REMARK 3 T13: 0.0082 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.9062 L22: 0.7059 REMARK 3 L33: 1.6736 L12: -0.2126 REMARK 3 L13: 0.4497 L23: -0.0274 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0353 S13: -0.0211 REMARK 3 S21: 0.0102 S22: 0.0215 S23: 0.0363 REMARK 3 S31: 0.0335 S32: -0.1069 S33: -0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4AFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-12. REMARK 100 THE PDBE ID CODE IS EBI-50988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MAR225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.05 REMARK 200 RESOLUTION RANGE LOW (A) : 37.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.1 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.2 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.5 REMARK 200 R MERGE FOR SHELL (I) : 0.74 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.55800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.55800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.55800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -31.04350 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 53.76892 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 31.04350 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 53.76892 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2106 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 86 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 TYR A 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2039 O HOH A 2081 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2007 O HOH A 2007 2665 1.01 REMARK 500 O HOH A 2008 O HOH A 2008 2665 0.95 REMARK 500 O HOH A 2053 O HOH A 2129 5554 1.96 REMARK 500 O HOH A 2055 O HOH A 2055 2665 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 5 CG A GLU A 5 CD A -0.093 REMARK 500 VAL A 30 CB A VAL A 30 CG1A -0.195 REMARK 500 GLU A 32 CD GLU A 32 OE2 0.068 REMARK 500 ARG A 34 CZ A ARG A 34 NH2A 0.130 REMARK 500 TRP A 115 CB TRP A 115 CG 0.235 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 VAL A 30 CG1 - CB - CG2 ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 LEU A 61 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -126.92 52.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1118 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A1119 OHB REMARK 620 2 ATP A1117 O2A 91.5 REMARK 620 3 ATP A1117 O1B 177.4 88.8 REMARK 620 4 ATP A1117 O3G 96.0 90.8 86.5 REMARK 620 5 FLC A1119 OG2 83.8 92.1 93.7 177.1 REMARK 620 6 FLC A1119 OB1 75.6 166.8 104.0 93.2 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A1119 DBREF 4AFF A 1 112 UNP P0A3F5 GLNB_SYNP6 1 112 SEQADV 4AFF SER A 113 UNP P0A3F5 EXPRESSION TAG SEQADV 4AFF ALA A 114 UNP P0A3F5 EXPRESSION TAG SEQADV 4AFF TRP A 115 UNP P0A3F5 EXPRESSION TAG SEQADV 4AFF SER A 116 UNP P0A3F5 EXPRESSION TAG SEQADV 4AFF ASN A 86 UNP P0A3F5 ILE 86 ENGINEERED MUTATION SEQRES 1 A 116 MET LYS LYS ILE GLU ALA ILE ILE ARG PRO PHE LYS LEU SEQRES 2 A 116 ASP GLU VAL LYS ILE ALA LEU VAL ASN ALA GLY ILE VAL SEQRES 3 A 116 GLY MET THR VAL SER GLU VAL ARG GLY PHE GLY ARG GLN SEQRES 4 A 116 LYS GLY GLN THR GLU ARG TYR ARG GLY SER GLU TYR THR SEQRES 5 A 116 VAL GLU PHE LEU GLN LYS LEU LYS LEU GLU ILE VAL VAL SEQRES 6 A 116 GLU ASP ALA GLN VAL ASP THR VAL ILE ASP LYS ILE VAL SEQRES 7 A 116 ALA ALA ALA ARG THR GLY GLU ASN GLY ASP GLY LYS ILE SEQRES 8 A 116 PHE VAL SER PRO VAL ASP GLN THR ILE ARG ILE ARG THR SEQRES 9 A 116 GLY GLU LYS ASN ALA ASP ALA ILE SER ALA TRP SER HET ATP A1117 31 HET MG A1118 1 HET FLC A1119 13 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM FLC CITRATE ANION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 HOH *130(H2 O) HELIX 1 1 LYS A 12 ALA A 23 1 12 HELIX 2 2 GLU A 66 ALA A 68 5 3 HELIX 3 3 GLN A 69 ARG A 82 1 14 HELIX 4 4 ASN A 108 SER A 113 1 6 SHEET 1 AA 4 THR A 29 GLY A 35 0 SHEET 2 AA 4 LEU A 56 VAL A 65 -1 O LEU A 56 N GLY A 35 SHEET 3 AA 4 LYS A 2 ILE A 8 -1 O LYS A 2 N VAL A 65 SHEET 4 AA 4 GLY A 89 PRO A 95 -1 O LYS A 90 N ILE A 7 LINK O2A ATP A1117 MG MG A1118 1555 1555 2.06 LINK O3G ATP A1117 MG MG A1118 1555 1555 2.04 LINK O1B ATP A1117 MG MG A1118 1555 1555 2.07 LINK OG2 FLC A1119 MG MG A1118 1555 1555 2.11 LINK OB1 FLC A1119 MG MG A1118 1555 1555 2.10 LINK OHB FLC A1119 MG MG A1118 1555 1555 2.06 SITE 1 AC1 23 ILE A 7 GLY A 27 MET A 28 THR A 29 SITE 2 AC1 23 GLY A 35 PHE A 36 GLY A 37 ARG A 38 SITE 3 AC1 23 GLU A 62 VAL A 64 ASN A 86 GLY A 87 SITE 4 AC1 23 ASP A 88 GLY A 89 LYS A 90 ARG A 101 SITE 5 AC1 23 ARG A 103 MG A1118 FLC A1119 HOH A2061 SITE 6 AC1 23 HOH A2104 HOH A2114 HOH A2130 SITE 1 AC2 2 ATP A1117 FLC A1119 SITE 1 AC3 17 PHE A 36 GLY A 37 ARG A 38 GLN A 39 SITE 2 AC3 17 LYS A 40 LEU A 56 ASN A 86 GLY A 87 SITE 3 AC3 17 ASN A 108 ATP A1117 MG A1118 HOH A2061 SITE 4 AC3 17 HOH A2062 HOH A2065 HOH A2073 HOH A2102 SITE 5 AC3 17 HOH A2121 CRYST1 62.087 62.087 51.116 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016106 0.009299 0.000000 0.00000 SCALE2 0.000000 0.018598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019563 0.00000