HEADER MEMBRANE PROTEIN 19-JAN-12 4AFK
TITLE IN MESO STRUCTURE OF ALGINATE TRANSPORTER, ALGE, FROM PSEUDOMONAS
TITLE 2 AERUGINOSA, PAO1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALGINATE PRODUCTION PROTEIN ALGE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 33-490;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA;
SOURCE 3 ORGANISM_TAXID: 208964;
SOURCE 4 STRAIN: PAO1;
SOURCE 5 ATCC: 15692;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VARIANT: STAR;
SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET200 D TOPO;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: ALGE_PET200/D-TOPO;
SOURCE 12 OTHER_DETAILS: HOLLOWAY COLLECTION
KEYWDS MEMBRANE PROTEIN, OUTER MEMBRANE, LIPIDIC CUBIC PHASE, BETA BARREL
EXPDTA X-RAY DIFFRACTION
AUTHOR J.TAN,V.E.PYE,D.ARAGAO,M.CAFFREY
REVDAT 8 07-FEB-24 4AFK 1 REMARK
REVDAT 7 29-MAR-23 4AFK 1 AUTHOR REMARK HETSYN LINK
REVDAT 6 22-MAY-19 4AFK 1 REMARK
REVDAT 5 30-SEP-15 4AFK 1 JRNL
REVDAT 4 13-AUG-14 4AFK 1 JRNL
REVDAT 3 06-AUG-14 4AFK 1 JRNL
REVDAT 2 30-JUL-14 4AFK 1 JRNL
REVDAT 1 06-FEB-13 4AFK 0
JRNL AUTH J.TAN,S.L.ROUSE,D.LI,V.E.PYE,L.VOGELEY,A.R.BRINTH,
JRNL AUTH 2 T.EL ARNAOUT,J.C.WHITNEY,P.L.HOWELL,M.S.P.SANSOM,M.CAFFREY
JRNL TITL A CONFORMATIONAL LANDSCAPE FOR ALGINATE SECRETION ACROSS THE
JRNL TITL 2 OUTER MEMBRANE OF PSEUDOMONAS AERUGINOSA.
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2054 2014
JRNL REFN ISSN 0907-4449
JRNL PMID 25084326
JRNL DOI 10.1107/S1399004714001850
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5
REMARK 3 NUMBER OF REFLECTIONS : 35580
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.166
REMARK 3 R VALUE (WORKING SET) : 0.163
REMARK 3 FREE R VALUE : 0.209
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1788
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 19.7712 - 4.4456 1.00 2814 150 0.1763 0.1942
REMARK 3 2 4.4456 - 3.5352 1.00 2770 155 0.1543 0.1976
REMARK 3 3 3.5352 - 3.0902 1.00 2736 160 0.1601 0.2039
REMARK 3 4 3.0902 - 2.8085 0.99 2734 141 0.1646 0.1917
REMARK 3 5 2.8085 - 2.6077 0.99 2688 143 0.1633 0.2182
REMARK 3 6 2.6077 - 2.4543 0.98 2719 138 0.1547 0.1984
REMARK 3 7 2.4543 - 2.3315 0.97 2674 161 0.1566 0.2297
REMARK 3 8 2.3315 - 2.2302 0.97 2647 137 0.1582 0.2298
REMARK 3 9 2.2302 - 2.1444 0.95 2615 130 0.1533 0.1961
REMARK 3 10 2.1444 - 2.0705 0.94 2591 122 0.1574 0.2280
REMARK 3 11 2.0705 - 2.0059 0.91 2526 124 0.1611 0.2108
REMARK 3 12 2.0059 - 1.9486 0.86 2306 129 0.1739 0.2219
REMARK 3 13 1.9486 - 1.8973 0.71 1972 98 0.2185 0.3114
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 0.90
REMARK 3 SHRINKAGE RADIUS : 0.61
REMARK 3 K_SOL : 0.40
REMARK 3 B_SOL : 59.83
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.170
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 15.42
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.51
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.03590
REMARK 3 B22 (A**2) : 2.21850
REMARK 3 B33 (A**2) : -3.25440
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -1.74680
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 3898
REMARK 3 ANGLE : 1.344 5199
REMARK 3 CHIRALITY : 0.099 508
REMARK 3 PLANARITY : 0.005 669
REMARK 3 DIHEDRAL : 19.379 1523
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: (CHAIN A AND RESID 37:118)
REMARK 3 ORIGIN FOR THE GROUP (A): 3.6627 -8.1154 32.6708
REMARK 3 T TENSOR
REMARK 3 T11: 0.0106 T22: 0.0250
REMARK 3 T33: 0.0705 T12: -0.0739
REMARK 3 T13: -0.0291 T23: 0.0097
REMARK 3 L TENSOR
REMARK 3 L11: 0.2982 L22: 0.3297
REMARK 3 L33: 0.0512 L12: 0.0388
REMARK 3 L13: -0.0508 L23: 0.0809
REMARK 3 S TENSOR
REMARK 3 S11: 0.1473 S12: 0.0640 S13: -0.0011
REMARK 3 S21: -0.0113 S22: -0.1318 S23: 0.1254
REMARK 3 S31: -0.1201 S32: 0.0579 S33: -0.0085
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: (CHAIN A AND RESID 119:232)
REMARK 3 ORIGIN FOR THE GROUP (A): 20.1401 -14.2823 33.0461
REMARK 3 T TENSOR
REMARK 3 T11: 0.0580 T22: 0.0504
REMARK 3 T33: 0.0567 T12: -0.0023
REMARK 3 T13: -0.0100 T23: 0.0004
REMARK 3 L TENSOR
REMARK 3 L11: 0.3597 L22: 0.2654
REMARK 3 L33: 0.1383 L12: 0.1055
REMARK 3 L13: -0.1073 L23: -0.1465
REMARK 3 S TENSOR
REMARK 3 S11: 0.0236 S12: 0.0117 S13: 0.0035
REMARK 3 S21: 0.0486 S22: -0.0222 S23: -0.0050
REMARK 3 S31: -0.0067 S32: -0.0020 S33: -0.0070
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: (CHAIN A AND RESID 233:313)
REMARK 3 ORIGIN FOR THE GROUP (A): 24.8815 -6.1799 19.1723
REMARK 3 T TENSOR
REMARK 3 T11: 0.0736 T22: 0.1458
REMARK 3 T33: 0.0708 T12: -0.0201
REMARK 3 T13: 0.0094 T23: -0.0165
REMARK 3 L TENSOR
REMARK 3 L11: 0.1973 L22: 0.2544
REMARK 3 L33: 0.1049 L12: 0.0740
REMARK 3 L13: -0.1401 L23: -0.1089
REMARK 3 S TENSOR
REMARK 3 S11: 0.0194 S12: 0.1120 S13: -0.0215
REMARK 3 S21: 0.0175 S22: -0.0262 S23: -0.0344
REMARK 3 S31: 0.1142 S32: -0.1331 S33: -0.0194
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: (CHAIN A AND RESID 314:490)
REMARK 3 ORIGIN FOR THE GROUP (A): 16.5885 7.3036 28.9381
REMARK 3 T TENSOR
REMARK 3 T11: 0.0380 T22: 0.0174
REMARK 3 T33: 0.0244 T12: -0.0105
REMARK 3 T13: 0.0045 T23: 0.0071
REMARK 3 L TENSOR
REMARK 3 L11: 0.5584 L22: 0.3755
REMARK 3 L33: 0.1618 L12: 0.0253
REMARK 3 L13: -0.0431 L23: 0.0740
REMARK 3 S TENSOR
REMARK 3 S11: 0.0174 S12: 0.0205 S13: 0.0147
REMARK 3 S21: -0.0290 S22: -0.0070 S23: 0.0145
REMARK 3 S31: -0.0268 S32: -0.0100 S33: -0.0082
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4AFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-12.
REMARK 100 THE DEPOSITION ID IS D_1290050989.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-APR-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37703
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 113.180
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.400
REMARK 200 R MERGE (I) : 0.14000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9
REMARK 200 DATA REDUNDANCY IN SHELL : 2.50
REMARK 200 R MERGE FOR SHELL (I) : 0.35000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 3RBH
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.96
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 7.5, 0.1 M SODIUM
REMARK 280 CITRATE, 18 %(W/V) PEG 400. PROTEIN WAS MIXED WITH 7.8 MAG AT
REMARK 280 RATIO 1:1 (W:W) TO FORM CUBIC PHASE., LIPIDIC CUBIC PHASE
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.62650
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.20800
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.62650
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.20800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 33
REMARK 465 ASN A 34
REMARK 465 SER A 35
REMARK 465 GLY A 36
REMARK 465 ASP A 109
REMARK 465 ASP A 110
REMARK 465 GLY A 111
REMARK 465 ASN A 112
REMARK 465 ASN A 113
REMARK 465 SER A 114
REMARK 465 ARG A 115
REMARK 465 ASN A 116
REMARK 465 LYS A 439
REMARK 465 GLN A 440
REMARK 465 GLY A 441
REMARK 465 LEU A 442
REMARK 465 LEU A 443
REMARK 465 PRO A 444
REMARK 465 ALA A 445
REMARK 465 SER A 446
REMARK 465 MET A 447
REMARK 465 SER A 448
REMARK 465 GLN A 449
REMARK 465 TYR A 450
REMARK 465 VAL A 451
REMARK 465 ASP A 452
REMARK 465 GLU A 453
REMARK 465 PRO A 454
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 NE2 GLN A 303 NE2 GLN A 303 2655 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 54 110.38 -170.29
REMARK 500 ASN A 67 84.43 -154.44
REMARK 500 ASP A 162 80.97 -162.91
REMARK 500 ASP A 321 -157.85 -150.75
REMARK 500 ASN A 355 39.81 -85.24
REMARK 500 ARG A 389 -129.31 45.50
REMARK 500 ASN A 416 78.44 -109.00
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL (PE5): PEG 400
REMARK 600 LAURYL DIMETHYLAMINE-N-OXIDE (LDA): SOME LDA MOLECULES
REMARK 600 HAVE NOT HAD HEAD GROUPS FITTED AS NO ELECTRON DENSITY,
REMARK 600 ALKANE CHAINS WERE MODELLED WHERE WE WERE UNABLE TO
REMARK 600 DISTINGUISH BETWEEN LADO AND 7.8 MAG.
REMARK 600 INCLUSION OF THE TAILS FIT INTO DENSITY AND REDUCES
REMARK 600 FREE R FACTOR BY 1.2 PERCENT.
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 LDA A 1495
REMARK 610 LDA A 1497
REMARK 610 LDA A 1498
REMARK 610 LDA A 1499
REMARK 610 LDA A 1500
REMARK 610 LDA A 1501
REMARK 610 LDA A 1502
REMARK 610 LDA A 1503
REMARK 610 LDA A 1504
REMARK 610 LDA A 1505
REMARK 610 LDA A 1506
REMARK 610 PE5 A 1516
REMARK 610 PE5 A 1517
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1509 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 55 OD1
REMARK 620 2 ASP A 55 OD2 46.1
REMARK 620 3 ASP A 57 OD2 74.2 112.8
REMARK 620 4 ASP A 57 OD1 67.9 81.4 44.5
REMARK 620 5 ALA A 61 O 151.0 125.6 90.5 83.9
REMARK 620 6 GLY A 63 O 95.3 107.2 105.6 147.7 112.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A1507 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA A 136 O
REMARK 620 2 THR A 139 O 78.4
REMARK 620 3 TYR A 141 O 153.3 100.6
REMARK 620 4 GLU A 144 O 101.7 157.3 89.4
REMARK 620 5 GLU A 144 OE1 97.8 79.7 108.4 77.8
REMARK 620 6 HOH A2064 O 74.7 89.9 78.6 112.2 168.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A1508 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN A 273 OD1
REMARK 620 2 ARG A 317 NH2 57.8
REMARK 620 3 ARG A 317 NE 76.5 44.2
REMARK 620 4 ASN A 319 OD1 77.5 116.4 85.8
REMARK 620 5 LYS A 325 NZ 148.5 153.7 124.9 81.2
REMARK 620 N 1 2 3 4
REMARK 700
REMARK 700 SHEET
REMARK 700 DETERMINATION METHOD: DSSP
REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS
REMARK 700 BELOW IS ACTUALLY AN 18-STRANDED BARREL THIS IS REPRESENTED BY
REMARK 700 A 19-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
REMARK 700 ARE IDENTICAL.
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78M A 1510
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78N A 1511
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78M A 1512
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78N A 1513
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78N A 1514
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 78M A 1515
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1492
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1493
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1494
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1495
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1496
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1497
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1498
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1499
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1500
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1501
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1502
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1503
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1505
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 1506
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1491
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1507
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1508
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1509
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1516
REMARK 800
REMARK 800 SITE_IDENTIFIER: CC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1517
DBREF 4AFK A 33 490 UNP P18895 ALGE_PSEAE 33 490
SEQRES 1 A 458 ALA ASN SER GLY GLU ALA PRO LYS ASN PHE GLY LEU ASP
SEQRES 2 A 458 VAL LYS ILE THR GLY GLU SER GLU ASN ASP ARG ASP LEU
SEQRES 3 A 458 GLY THR ALA PRO GLY GLY THR LEU ASN ASP ILE GLY ILE
SEQRES 4 A 458 ASP LEU ARG PRO TRP ALA PHE GLY GLN TRP GLY ASP TRP
SEQRES 5 A 458 SER ALA TYR PHE MET GLY GLN ALA VAL ALA ALA THR ASP
SEQRES 6 A 458 THR ILE GLU THR ASP THR LEU GLN SER ASP THR ASP ASP
SEQRES 7 A 458 GLY ASN ASN SER ARG ASN ASP GLY ARG GLU PRO ASP LYS
SEQRES 8 A 458 SER TYR LEU ALA ALA ARG GLU PHE TRP VAL ASP TYR ALA
SEQRES 9 A 458 GLY LEU THR ALA TYR PRO GLY GLU HIS LEU ARG PHE GLY
SEQRES 10 A 458 ARG GLN ARG LEU ARG GLU ASP SER GLY GLN TRP GLN ASP
SEQRES 11 A 458 THR ASN ILE GLU ALA LEU ASN TRP SER PHE GLU THR THR
SEQRES 12 A 458 LEU LEU ASN ALA HIS ALA GLY VAL ALA GLN ARG PHE SER
SEQRES 13 A 458 GLU TYR ARG THR ASP LEU ASP GLU LEU ALA PRO GLU ASP
SEQRES 14 A 458 LYS ASP ARG THR HIS VAL PHE GLY ASP ILE SER THR GLN
SEQRES 15 A 458 TRP ALA PRO HIS HIS ARG ILE GLY VAL ARG ILE HIS HIS
SEQRES 16 A 458 ALA ASP ASP SER GLY HIS LEU ARG ARG PRO GLY GLU GLU
SEQRES 17 A 458 VAL ASP ASN LEU ASP LYS THR TYR THR GLY GLN LEU THR
SEQRES 18 A 458 TRP LEU GLY ILE GLU ALA THR GLY ASP ALA TYR ASN TYR
SEQRES 19 A 458 ARG SER SER MET PRO LEU ASN TYR TRP ALA SER ALA THR
SEQRES 20 A 458 TRP LEU THR GLY ASP ARG ASP ASN LEU THR THR THR THR
SEQRES 21 A 458 VAL ASP ASP ARG ARG ILE ALA THR GLY LYS GLN SER GLY
SEQRES 22 A 458 ASP VAL ASN ALA PHE GLY VAL ASP LEU GLY LEU ARG TRP
SEQRES 23 A 458 ASN ILE ASP GLU GLN TRP LYS ALA GLY VAL GLY TYR ALA
SEQRES 24 A 458 ARG GLY SER GLY GLY GLY LYS ASP GLY GLU GLU GLN PHE
SEQRES 25 A 458 GLN GLN THR GLY LEU GLU SER ASN ARG SER ASN PHE THR
SEQRES 26 A 458 GLY THR ARG SER ARG VAL HIS ARG PHE GLY GLU ALA PHE
SEQRES 27 A 458 ARG GLY GLU LEU SER ASN LEU GLN ALA ALA THR LEU PHE
SEQRES 28 A 458 GLY SER TRP GLN LEU ARG GLU ASP TYR ASP ALA SER LEU
SEQRES 29 A 458 VAL TYR HIS LYS PHE TRP ARG VAL ASP ASP ASP SER ASP
SEQRES 30 A 458 ILE GLY THR SER GLY ILE ASN ALA ALA LEU GLN PRO GLY
SEQRES 31 A 458 GLU LYS ASP ILE GLY GLN GLU LEU ASP LEU VAL VAL THR
SEQRES 32 A 458 LYS TYR PHE LYS GLN GLY LEU LEU PRO ALA SER MET SER
SEQRES 33 A 458 GLN TYR VAL ASP GLU PRO SER ALA LEU ILE ARG PHE ARG
SEQRES 34 A 458 GLY GLY LEU PHE LYS PRO GLY ASP ALA TYR GLY PRO GLY
SEQRES 35 A 458 THR ASP SER THR MET HIS ARG ALA PHE VAL ASP PHE ILE
SEQRES 36 A 458 TRP ARG PHE
HET CA A1509 1
HET FLC A1491 13
HET LDA A1492 16
HET LDA A1493 16
HET LDA A1494 16
HET LDA A1495 11
HET LDA A1496 16
HET LDA A1497 13
HET LDA A1498 9
HET LDA A1499 10
HET LDA A1500 12
HET LDA A1501 8
HET LDA A1502 7
HET LDA A1503 9
HET LDA A1504 9
HET LDA A1505 8
HET LDA A1506 11
HET NA A1507 1
HET NA A1508 1
HET 78M A1510 22
HET 78N A1511 22
HET 78M A1512 22
HET 78N A1513 22
HET 78N A1514 22
HET 78M A1515 22
HET PE5 A1516 15
HET PE5 A1517 8
HETNAM CA CALCIUM ION
HETNAM FLC CITRATE ANION
HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE
HETNAM NA SODIUM ION
HETNAM 78M (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
HETNAM 78N (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETSYN 78M 7.8 MONOACYLGLYCEROL
HETSYN 78N 7.8 MONOACYLGLYCEROL (2R)
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
FORMUL 2 CA CA 2+
FORMUL 3 FLC C6 H5 O7 3-
FORMUL 4 LDA 15(C14 H31 N O)
FORMUL 19 NA 2(NA 1+)
FORMUL 21 78M 3(C18 H34 O4)
FORMUL 22 78N 3(C18 H34 O4)
FORMUL 27 PE5 2(C18 H38 O9)
FORMUL 29 HOH *242(H2 O)
HELIX 1 1 GLY A 337 GLU A 341 5 5
SHEET 1 AA19 PHE A 42 ASN A 54 0
SHEET 2 AA19 LEU A 66 TRP A 81 -1 O LEU A 66 N GLU A 53
SHEET 3 AA19 TRP A 84 ALA A 95 -1 O TRP A 84 N TRP A 81
SHEET 4 AA19 SER A 124 TYR A 135 -1 O TYR A 125 N VAL A 93
SHEET 5 AA19 GLU A 144 ARG A 154 -1 O LEU A 146 N TYR A 135
SHEET 6 AA19 ASP A 162 GLU A 173 -1 O THR A 163 N LEU A 153
SHEET 7 AA19 LEU A 177 GLN A 185 -1 O ALA A 179 N PHE A 172
SHEET 8 AA19 ARG A 204 ALA A 216 -1 O HIS A 206 N ALA A 184
SHEET 9 AA19 HIS A 219 ASP A 230 -1 O HIS A 219 N TRP A 215
SHEET 10 AA19 TYR A 248 GLY A 261 -1 O GLY A 250 N ASP A 230
SHEET 11 AA19 LEU A 272 THR A 292 -1 O TYR A 274 N GLY A 261
SHEET 12 AA19 ARG A 297 ASN A 319 -1 O ILE A 298 N THR A 291
SHEET 13 AA19 TRP A 324 GLY A 333 -1 O ALA A 326 N TRP A 318
SHEET 14 AA19 LEU A 377 LEU A 388 -1 O LEU A 377 N GLY A 333
SHEET 15 AA19 TYR A 392 ARG A 403 -1 O TYR A 392 N LEU A 388
SHEET 16 AA19 ASP A 425 TYR A 437 -1 O GLY A 427 N PHE A 401
SHEET 17 AA19 LEU A 457 PRO A 467 -1 O ILE A 458 N LYS A 436
SHEET 18 AA19 MET A 479 ARG A 489 -1 O MET A 479 N PHE A 465
SHEET 19 AA19 PHE A 42 ASN A 54 -1 O VAL A 46 N TRP A 488
SHEET 1 AB 2 ARG A 353 SER A 354 0
SHEET 2 AB 2 VAL A 363 HIS A 364 -1 O VAL A 363 N SER A 354
LINK OD1 ASP A 55 CA CA A1509 1555 1555 3.02
LINK OD2 ASP A 55 CA CA A1509 1555 1555 2.53
LINK OD2 ASP A 57 CA CA A1509 1555 1555 3.04
LINK OD1 ASP A 57 CA CA A1509 1555 1555 2.75
LINK O ALA A 61 CA CA A1509 1555 1555 2.59
LINK O GLY A 63 CA CA A1509 1555 1555 2.53
LINK O ALA A 136 NA NA A1507 1555 1555 2.45
LINK O THR A 139 NA NA A1507 1555 1555 2.68
LINK O TYR A 141 NA NA A1507 1555 1555 2.56
LINK O GLU A 144 NA NA A1507 1555 1555 2.47
LINK OE1 GLU A 144 NA NA A1507 1555 1555 2.66
LINK OD1 ASN A 273 NA NA A1508 1555 1555 3.07
LINK NH2 ARG A 317 NA NA A1508 1555 1555 3.11
LINK NE ARG A 317 NA NA A1508 1555 1555 2.95
LINK OD1 ASN A 319 NA NA A1508 1555 1555 3.01
LINK NZ LYS A 325 NA NA A1508 1555 1555 2.99
LINK NA NA A1507 O HOH A2064 1555 1555 2.72
CISPEP 1 ASN A 54 ASP A 55 0 -1.64
SITE 1 AC1 11 TRP A 81 TYR A 87 PHE A 88 PHE A 148
SITE 2 AC1 11 HIS A 219 MET A 270 PRO A 271 LEU A 272
SITE 3 AC1 11 TYR A 274 78N A1513 HOH A2003
SITE 1 AC2 6 SER A 188 GLY A 315 VAL A 328 TYR A 330
SITE 2 AC2 6 LDA A1496 78N A1513
SITE 1 AC3 9 TRP A 170 VAL A 207 PHE A 208 HIS A 227
SITE 2 AC3 9 THR A 253 LEU A 432 LEU A 464 THR A 478
SITE 3 AC3 9 78M A1515
SITE 1 AC4 8 TRP A 81 PHE A 148 TRP A 215 HIS A 219
SITE 2 AC4 8 LDA A1497 78M A1510 78N A1511 HOH A2131
SITE 1 AC5 4 THR A 139 ALA A 140 TYR A 392 ILE A 458
SITE 1 AC6 10 ASN A 54 ASP A 229 LEU A 430 GLY A 462
SITE 2 AC6 10 GLY A 463 LEU A 464 THR A 478 HIS A 480
SITE 3 AC6 10 LDA A1494 78M A1512
SITE 1 AC7 2 PRO A 75 TRP A 318
SITE 1 AC8 5 ASN A 67 ASP A 68 THR A 96 LDA A1494
SITE 2 AC8 5 HOH A2240
SITE 1 AC9 7 ASN A 54 GLY A 182 THR A 205 ASP A 229
SITE 2 AC9 7 HIS A 480 LDA A1493 78M A1515
SITE 1 BC1 3 ALA A 94 ALA A 95 HOH A2241
SITE 1 BC2 9 GLN A 91 ALA A 127 ARG A 191 LEU A 194
SITE 2 BC2 9 ASP A 195 GLN A 378 TRP A 402 78N A1511
SITE 3 BC2 9 HOH A2110
SITE 1 BC3 5 TRP A 280 PHE A 310 LDA A1500 78N A1513
SITE 2 BC3 5 HOH A2242
SITE 1 BC4 2 ASP A 210 ILE A 211
SITE 1 BC5 2 TRP A 386 ALA A 394
SITE 1 BC6 3 ALA A 278 VAL A 312 LDA A1497
SITE 1 BC7 2 VAL A 484 PHE A 486
SITE 1 BC8 1 LDA A1505
SITE 1 BC9 1 TRP A 215
SITE 1 CC1 3 TYR A 398 LYS A 400 LDA A1502
SITE 1 CC2 3 PHE A 148 ALA A 167 GLN A 185
SITE 1 CC3 7 LYS A 47 ARG A 74 THR A 101 ASP A 102
SITE 2 CC3 7 THR A 103 ARG A 152 HOH A2041
SITE 1 CC4 5 ALA A 136 THR A 139 TYR A 141 GLU A 144
SITE 2 CC4 5 HOH A2064
SITE 1 CC5 5 ASN A 265 ASN A 273 ARG A 317 ASN A 319
SITE 2 CC5 5 LYS A 325
SITE 1 CC6 5 ASP A 55 ASP A 57 ALA A 61 PRO A 62
SITE 2 CC6 5 GLY A 63
SITE 1 CC7 9 ARG A 285 ASN A 287 GLN A 303 GLY A 305
SITE 2 CC7 9 ASP A 339 GLY A 340 GLN A 343 HOH A2163
SITE 3 CC7 9 HOH A2190
SITE 1 CC8 8 GLN A 159 TRP A 160 TRP A 254 SER A 277
SITE 2 CC8 8 THR A 279 GLY A 311 GLN A 346 THR A 347
CRYST1 57.253 74.416 115.529 90.00 101.56 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017466 0.000000 0.003573 0.00000
SCALE2 0.000000 0.013438 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008835 0.00000