HEADER TRANSFERASE 24-JAN-12 4AG7 TITLE C. ELEGANS GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE (GNA1): TITLE 2 COENZYME A ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOGLUCOSAMINE ACETYLASE, PHOSPHOGLUCOSAMINE COMPND 5 TRANSACETYLASE; COMPND 6 EC: 2.3.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: RESIDUE CYS141 FORMS A DISULPHIDE WITH THE COA. COMPND 9 CYS158 FROM THE A AND B CHAINS FORM A DISULPHIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 STRAIN: COSMID B0024; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1; SOURCE 11 OTHER_DETAILS: C. ELEGANS COSMID B0024 DNA (SANGER INSTITUTE, SOURCE 12 CAMBRIDGESHIRE) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.C.DORFMUELLER,W.FANG,F.V.RAO,D.E.BLAIR,H.ATTRILL,S.M.SHEPHERD, AUTHOR 2 D.M.F.VAN AALTEN REVDAT 2 15-AUG-12 4AG7 1 JRNL REVDAT 1 25-JUL-12 4AG7 0 JRNL AUTH H.C.DORFMUELLER,W.FANG,F.V.RAO,D.E.BLAIR,H.ATTRILL, JRNL AUTH 2 D.M.F.VAN AALTEN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A TRAPPED JRNL TITL 2 COENZYME A ADDUCT OF CAENORHABDITIS ELEGANS GLUCOSAMINE-6- JRNL TITL 3 PHOSPHATE N-ACETYLTRANSFERASE 1. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1019 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22868768 JRNL DOI 10.1107/S0907444912019592 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.75 REMARK 3 NUMBER OF REFLECTIONS : 43698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17955 REMARK 3 R VALUE (WORKING SET) : 0.17770 REMARK 3 FREE R VALUE : 0.21383 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2326 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.551 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.591 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.260 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.863 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02 REMARK 3 B22 (A**2) : -0.02 REMARK 3 B33 (A**2) : 0.03 REMARK 3 B12 (A**2) : -0.01 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.920 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2739 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3716 ; 2.447 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.546 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;13.980 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2024 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4AG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-12. REMARK 100 THE PDBE ID CODE IS EBI-51062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.3 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.0 REMARK 200 R MERGE FOR SHELL (I) : 0.28 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM ACCOA, GLCN-6-P, REMARK 280 N-ACETYL-GLUCOSAMINE-6-PHOSPHATE, 0.1 M REMARK 280 TRIS-HYDROCHLORIDE PH 8.5, 0.2 M SODIUM ACETATE TRIHYDRATE REMARK 280 AND 30% (V/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.76167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.52333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.64250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.40417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.88083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 100 CZ ARG B 100 NH1 0.117 REMARK 500 ARG B 100 CZ ARG B 100 NH2 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 23 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 CYS A 158 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 100 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG B 100 NE - CZ - NH2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 100 NH1 - CZ - NH2 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 44 -166.39 -161.17 REMARK 500 PRO A 143 39.77 -92.38 REMARK 500 LEU A 145 26.84 -73.44 REMARK 500 ASN B 17 53.62 39.04 REMARK 500 THR B 44 -174.83 -174.32 REMARK 500 ASN B 48 56.25 -100.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 143 GLU A 144 148.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B1166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AG9 RELATED DB: PDB REMARK 900 C. ELEGANS GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE REMARK 900 (GNA1): TERNARY COMPLEX WITH COENZYME A AND GLCNAC DBREF 4AG7 A 1 165 UNP Q17427 GNA1_CAEEL 1 165 DBREF 4AG7 B 1 165 UNP Q17427 GNA1_CAEEL 1 165 SEQRES 1 A 165 MET SER HIS ILE PHE ASP ALA SER VAL LEU ALA PRO HIS SEQRES 2 A 165 ILE PRO SER ASN LEU PRO ASP ASN PHE LYS VAL ARG PRO SEQRES 3 A 165 LEU ALA LYS ASP ASP PHE SER LYS GLY TYR VAL ASP LEU SEQRES 4 A 165 LEU SER GLN LEU THR SER VAL GLY ASN LEU ASP GLN GLU SEQRES 5 A 165 ALA PHE GLU LYS ARG PHE GLU ALA MET ARG THR SER VAL SEQRES 6 A 165 PRO ASN TYR HIS ILE VAL VAL ILE GLU ASP SER ASN SER SEQRES 7 A 165 GLN LYS VAL VAL ALA SER ALA SER LEU VAL VAL GLU MET SEQRES 8 A 165 LYS PHE ILE HIS GLY ALA GLY SER ARG GLY ARG VAL GLU SEQRES 9 A 165 ASP VAL VAL VAL ASP THR GLU MET ARG ARG GLN LYS LEU SEQRES 10 A 165 GLY ALA VAL LEU LEU LYS THR LEU VAL SER LEU GLY LYS SEQRES 11 A 165 SER LEU GLY VAL TYR LYS ILE SER LEU GLU CYS VAL PRO SEQRES 12 A 165 GLU LEU LEU PRO PHE TYR SER GLN PHE GLY PHE GLN ASP SEQRES 13 A 165 ASP CYS ASN PHE MET THR GLN ARG PHE SEQRES 1 B 165 MET SER HIS ILE PHE ASP ALA SER VAL LEU ALA PRO HIS SEQRES 2 B 165 ILE PRO SER ASN LEU PRO ASP ASN PHE LYS VAL ARG PRO SEQRES 3 B 165 LEU ALA LYS ASP ASP PHE SER LYS GLY TYR VAL ASP LEU SEQRES 4 B 165 LEU SER GLN LEU THR SER VAL GLY ASN LEU ASP GLN GLU SEQRES 5 B 165 ALA PHE GLU LYS ARG PHE GLU ALA MET ARG THR SER VAL SEQRES 6 B 165 PRO ASN TYR HIS ILE VAL VAL ILE GLU ASP SER ASN SER SEQRES 7 B 165 GLN LYS VAL VAL ALA SER ALA SER LEU VAL VAL GLU MET SEQRES 8 B 165 LYS PHE ILE HIS GLY ALA GLY SER ARG GLY ARG VAL GLU SEQRES 9 B 165 ASP VAL VAL VAL ASP THR GLU MET ARG ARG GLN LYS LEU SEQRES 10 B 165 GLY ALA VAL LEU LEU LYS THR LEU VAL SER LEU GLY LYS SEQRES 11 B 165 SER LEU GLY VAL TYR LYS ILE SER LEU GLU CYS VAL PRO SEQRES 12 B 165 GLU LEU LEU PRO PHE TYR SER GLN PHE GLY PHE GLN ASP SEQRES 13 B 165 ASP CYS ASN PHE MET THR GLN ARG PHE HET COA A1166 48 HET COA B1166 48 HETNAM COA COENZYME A FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 HOH *351(H2 O) HELIX 1 1 ASP A 6 ALA A 11 1 6 HELIX 2 2 PRO A 12 ILE A 14 5 3 HELIX 3 3 LYS A 29 SER A 33 5 5 HELIX 4 4 GLY A 35 THR A 44 1 10 HELIX 5 5 ASP A 50 THR A 63 1 14 HELIX 6 6 PHE A 93 GLY A 98 1 6 HELIX 7 7 THR A 110 ARG A 113 5 4 HELIX 8 8 LYS A 116 GLY A 133 1 18 HELIX 9 9 VAL A 142 GLU A 144 5 3 HELIX 10 10 LEU A 145 GLN A 151 1 7 HELIX 11 11 ASP B 6 ALA B 11 1 6 HELIX 12 12 PRO B 12 ILE B 14 5 3 HELIX 13 13 LYS B 29 LYS B 34 5 6 HELIX 14 14 GLY B 35 SER B 41 1 7 HELIX 15 15 ASP B 50 THR B 63 1 14 HELIX 16 16 PHE B 93 GLY B 98 1 6 HELIX 17 17 THR B 110 ARG B 113 5 4 HELIX 18 18 LYS B 116 LEU B 132 1 17 HELIX 19 19 VAL B 142 GLU B 144 5 3 HELIX 20 20 LEU B 145 SER B 150 1 6 SHEET 1 AA 7 PHE A 22 PRO A 26 0 SHEET 2 AA 7 HIS A 69 ASP A 75 -1 O VAL A 72 N ARG A 25 SHEET 3 AA 7 VAL A 81 MET A 91 -1 N VAL A 82 O ILE A 73 SHEET 4 AA 7 SER A 99 VAL A 108 -1 O ARG A 100 N GLU A 90 SHEET 5 AA 7 LYS A 136 LEU A 139 1 O LYS A 136 N GLY A 101 SHEET 6 AA 7 MET B 161 ARG B 164 -1 O MET B 161 N LEU A 139 SHEET 7 AA 7 GLN A 155 ASP A 156 -1 O GLN A 155 N THR B 162 SHEET 1 BA 7 PHE B 22 PRO B 26 0 SHEET 2 BA 7 HIS B 69 ASP B 75 -1 O VAL B 72 N ARG B 25 SHEET 3 BA 7 LYS B 80 MET B 91 -1 O LYS B 80 N ASP B 75 SHEET 4 BA 7 SER B 99 VAL B 108 -1 O ARG B 100 N GLU B 90 SHEET 5 BA 7 LYS B 136 LEU B 139 1 O LYS B 136 N GLY B 101 SHEET 6 BA 7 MET A 161 GLN A 163 -1 O MET A 161 N LEU B 139 SHEET 7 BA 7 PHE B 154 ASP B 156 -1 O GLN B 155 N THR A 162 SSBOND 1 CYS A 158 CYS B 158 1555 1555 2.10 LINK SG CYS A 141 S1P COA A1166 1555 1555 2.14 LINK SG CYS B 141 S1P COA B1166 1555 1555 2.47 CISPEP 1 VAL A 65 PRO A 66 0 2.41 CISPEP 2 VAL B 65 PRO B 66 0 0.15 SITE 1 AC1 18 VAL A 106 VAL A 107 VAL A 108 ARG A 113 SITE 2 AC1 18 ARG A 114 GLN A 115 LYS A 116 LEU A 117 SITE 3 AC1 18 GLY A 118 ALA A 119 LYS A 123 CYS A 141 SITE 4 AC1 18 PRO A 147 PHE A 148 HOH A2158 HOH A2160 SITE 5 AC1 18 HOH A2162 HOH A2201 SITE 1 AC2 23 VAL B 106 VAL B 107 VAL B 108 ARG B 113 SITE 2 AC2 23 ARG B 114 GLN B 115 LYS B 116 LEU B 117 SITE 3 AC2 23 GLY B 118 ALA B 119 CYS B 141 LEU B 145 SITE 4 AC2 23 PRO B 147 PHE B 148 GLN B 151 HOH B2104 SITE 5 AC2 23 HOH B2106 HOH B2145 HOH B2146 HOH B2147 SITE 6 AC2 23 HOH B2148 HOH B2149 HOH B2150 CRYST1 86.072 86.072 77.285 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011618 0.006708 0.000000 0.00000 SCALE2 0.000000 0.013416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012939 0.00000