HEADER HYDROLASE 08-FEB-12 4AI5 TITLE CRYSTAL STRUCTURE OF Y16F OF 3-METHYLADENINE DNA GLYCOSYLASE I (TAG) TITLE 2 IN COMPLEX WITH 3-METHYLADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-3-METHYLADENINE GLYCOSYLASE I; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: 3-METHYLADENINE DNA GLYCOSYLASE I; COMPND 5 EC: 3.2.2.20; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MSSA476; SOURCE 3 ORGANISM_TAXID: 282459; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PEHISTEV KEYWDS HYDROLASE, 3-METHYLADENINE RECOGNITION, DNA REPAIR, 3-METHYLADENINE KEYWDS 2 TAUTOMER EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU,J.H.NAISMITH REVDAT 5 20-DEC-23 4AI5 1 REMARK LINK REVDAT 4 04-APR-18 4AI5 1 REMARK REVDAT 3 20-JUN-12 4AI5 1 JRNL REVDAT 2 13-JUN-12 4AI5 1 JRNL REVDAT 1 15-FEB-12 4AI5 0 JRNL AUTH X.ZHU,X.YAN,L.G.CARTER,H.LIU,S.GRAHAM,P.J.COOTE,J.H.NAISMITH JRNL TITL A MODEL FOR 3-METHYLADENINE RECOGNITION BY 3-METHYLADENINE JRNL TITL 2 DNA GLYCOSYLASE I (TAG) FROM STAPHYLOCOCCUS AUREUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 610 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22684054 JRNL DOI 10.1107/S1744309112016363 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 179.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 45350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3043 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.030 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7929 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5346 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10736 ; 1.550 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13055 ; 1.689 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 939 ; 5.174 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 384 ;35.668 ;24.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1349 ;15.225 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1111 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8789 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1649 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6707 -32.9611 2.4488 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0428 REMARK 3 T33: 0.1377 T12: 0.0021 REMARK 3 T13: -0.0297 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 4.1836 L22: 0.2935 REMARK 3 L33: 16.0035 L12: -0.5195 REMARK 3 L13: -2.7146 L23: -1.3236 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: -0.2932 S13: -0.3509 REMARK 3 S21: 0.0135 S22: 0.0796 S23: 0.0394 REMARK 3 S31: -0.0868 S32: 0.0026 S33: -0.2031 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7745 -12.7249 6.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0137 REMARK 3 T33: 0.0320 T12: 0.0032 REMARK 3 T13: 0.0258 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.4301 L22: 0.5433 REMARK 3 L33: 0.6311 L12: -0.1267 REMARK 3 L13: 0.1836 L23: 0.1724 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0327 S13: -0.0184 REMARK 3 S21: 0.0345 S22: 0.0424 S23: 0.0254 REMARK 3 S31: 0.0056 S32: -0.0511 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6104 -17.4236 -6.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0222 REMARK 3 T33: 0.0223 T12: -0.0134 REMARK 3 T13: -0.0140 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6640 L22: 2.9487 REMARK 3 L33: 0.6545 L12: -0.6170 REMARK 3 L13: -0.5518 L23: -0.1204 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0423 S13: 0.0331 REMARK 3 S21: -0.1485 S22: 0.0303 S23: -0.0352 REMARK 3 S31: 0.0362 S32: -0.0524 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3905 -44.4401 22.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.3502 REMARK 3 T33: 0.2713 T12: 0.1871 REMARK 3 T13: 0.0342 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 10.4979 L22: 10.7023 REMARK 3 L33: 22.7606 L12: 10.5966 REMARK 3 L13: 15.4482 L23: 15.5913 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.5606 S13: -0.2161 REMARK 3 S21: 0.0572 S22: 0.4395 S23: -0.2267 REMARK 3 S31: 0.1738 S32: 0.8930 S33: -0.4058 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7449 -32.8221 23.7391 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0256 REMARK 3 T33: 0.0135 T12: 0.0268 REMARK 3 T13: 0.0173 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0356 L22: 0.9246 REMARK 3 L33: 0.6136 L12: 0.1064 REMARK 3 L13: 0.2165 L23: 0.2246 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0034 S13: 0.0606 REMARK 3 S21: 0.0302 S22: -0.0025 S23: 0.0070 REMARK 3 S31: -0.0440 S32: 0.0044 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0984 -32.5315 33.2181 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0384 REMARK 3 T33: 0.0325 T12: -0.0019 REMARK 3 T13: -0.0213 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.2726 L22: 1.4016 REMARK 3 L33: 1.7609 L12: -1.0969 REMARK 3 L13: 0.1257 L23: 0.4061 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.1177 S13: 0.1233 REMARK 3 S21: 0.1355 S22: 0.0945 S23: -0.1477 REMARK 3 S31: -0.0365 S32: 0.2228 S33: -0.0622 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 31 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9346 -10.6472 85.2251 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.1134 REMARK 3 T33: 0.1618 T12: -0.0051 REMARK 3 T13: 0.0086 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 1.3357 L22: 2.1186 REMARK 3 L33: 1.4363 L12: -0.7084 REMARK 3 L13: 1.3532 L23: -0.5723 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: -0.1500 S13: -0.1559 REMARK 3 S21: 0.1853 S22: -0.0254 S23: 0.0778 REMARK 3 S31: 0.1069 S32: -0.1157 S33: -0.0788 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 149 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4967 3.1614 78.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0358 REMARK 3 T33: 0.0284 T12: 0.0347 REMARK 3 T13: -0.0066 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.1859 L22: 1.4794 REMARK 3 L33: 0.4393 L12: -0.5043 REMARK 3 L13: 0.1303 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.0495 S13: -0.0409 REMARK 3 S21: 0.0132 S22: 0.0128 S23: 0.0282 REMARK 3 S31: -0.0664 S32: -0.0656 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 150 C 186 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0047 -7.8744 75.4675 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.0602 REMARK 3 T33: 0.1021 T12: 0.0144 REMARK 3 T13: 0.0019 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.2684 L22: 2.8236 REMARK 3 L33: 1.7782 L12: -0.9829 REMARK 3 L13: 0.5833 L23: -0.3770 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.0109 S13: -0.3030 REMARK 3 S21: -0.1964 S22: 0.0317 S23: 0.2606 REMARK 3 S31: 0.1303 S32: -0.1206 S33: -0.0296 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 77 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6476 -11.7951 48.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.1981 REMARK 3 T33: 0.0371 T12: 0.0831 REMARK 3 T13: -0.0236 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.7914 L22: 1.1706 REMARK 3 L33: 1.6335 L12: -0.0215 REMARK 3 L13: -0.8735 L23: 0.2544 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: -0.3502 S13: -0.0834 REMARK 3 S21: 0.1705 S22: 0.0996 S23: -0.1512 REMARK 3 S31: 0.2164 S32: 0.3690 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 78 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4199 -10.9181 54.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.1717 REMARK 3 T33: 0.0089 T12: 0.1002 REMARK 3 T13: 0.0219 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.1651 L22: 1.6824 REMARK 3 L33: 2.6703 L12: 0.3371 REMARK 3 L13: 0.4305 L23: 0.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.2320 S12: -0.2707 S13: -0.0274 REMARK 3 S21: 0.1974 S22: 0.1692 S23: 0.0808 REMARK 3 S31: 0.0938 S32: 0.1894 S33: 0.0628 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 123 D 186 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4060 -15.1670 37.6727 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0433 REMARK 3 T33: 0.0531 T12: 0.0278 REMARK 3 T13: 0.0191 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.5454 L22: 0.3808 REMARK 3 L33: 3.0481 L12: -0.3261 REMARK 3 L13: -0.7817 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.0683 S13: -0.2212 REMARK 3 S21: 0.0874 S22: 0.0128 S23: 0.1114 REMARK 3 S31: 0.1926 S32: -0.1634 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -1 E 32 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1902 -18.9161 66.2748 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0925 REMARK 3 T33: 0.0874 T12: 0.0621 REMARK 3 T13: -0.0163 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.9672 L22: 2.3959 REMARK 3 L33: 3.0548 L12: -0.0459 REMARK 3 L13: -0.7959 L23: -1.8580 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: 0.2419 S13: -0.3296 REMARK 3 S21: -0.0858 S22: -0.2183 S23: -0.0383 REMARK 3 S31: 0.1096 S32: 0.0715 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 33 E 167 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6197 -9.1494 55.6285 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.2259 REMARK 3 T33: 0.0360 T12: 0.1475 REMARK 3 T13: -0.0038 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.4745 L22: 1.3839 REMARK 3 L33: 1.4512 L12: -0.5570 REMARK 3 L13: 0.2700 L23: -0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: 0.4852 S13: 0.0367 REMARK 3 S21: -0.3725 S22: -0.3604 S23: 0.0198 REMARK 3 S31: -0.0454 S32: 0.0902 S33: 0.1331 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 168 E 186 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9826 -13.1249 72.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.1738 REMARK 3 T33: 0.1206 T12: 0.0139 REMARK 3 T13: -0.0053 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.4117 L22: 5.7337 REMARK 3 L33: 4.0798 L12: -1.4971 REMARK 3 L13: 0.0372 L23: -2.3390 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.1104 S13: 0.1292 REMARK 3 S21: 0.2032 S22: -0.2050 S23: -0.6617 REMARK 3 S31: -0.1474 S32: 0.7207 S33: 0.1187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JG6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.13150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.40650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.13150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.40650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 16 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TYR 16 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN C, TYR 16 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN D, TYR 16 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN E, TYR 16 TO PHE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 87 CG HIS A 87 CD2 0.056 REMARK 500 HIS B 19 CG HIS B 19 CD2 0.054 REMARK 500 HIS E 17 CG HIS E 17 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 77 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 31.86 -93.03 REMARK 500 VAL A 20 -60.00 -122.24 REMARK 500 ALA B 5 32.76 -87.69 REMARK 500 VAL B 20 -62.03 -122.07 REMARK 500 ALA C 5 34.21 -89.26 REMARK 500 ALA D 5 34.71 -91.30 REMARK 500 VAL D 20 -60.27 -124.55 REMARK 500 ALA E 5 32.48 -94.36 REMARK 500 VAL E 20 -60.19 -122.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 HIS A 17 NE2 116.8 REMARK 620 3 HIS A 175 ND1 108.6 101.0 REMARK 620 4 CYS A 179 SG 112.9 99.5 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 HIS B 17 NE2 106.0 REMARK 620 3 HIS B 175 ND1 106.3 108.0 REMARK 620 4 CYS B 179 SG 113.2 102.8 119.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 4 SG REMARK 620 2 HIS C 17 NE2 113.9 REMARK 620 3 HIS C 175 ND1 106.5 101.1 REMARK 620 4 CYS C 179 SG 113.0 103.9 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 4 SG REMARK 620 2 HIS D 17 NE2 116.0 REMARK 620 3 HIS D 175 ND1 106.3 103.5 REMARK 620 4 CYS D 179 SG 112.9 99.0 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 4 SG REMARK 620 2 HIS E 17 NE2 114.0 REMARK 620 3 HIS E 175 ND1 108.1 103.1 REMARK 620 4 CYS E 179 SG 111.0 102.1 118.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK C 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK D 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK E 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1187 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JG6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A 3-METHYLADENINE DNA GLYCOSYLASE I FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4AI4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E38Q MUTANT OF 3-METHYLADENINE DNA GLYCOSYLASE REMARK 900 I FROM STAPHYLOCOCCUS AUREUS DBREF 4AI5 A 1 186 UNP Q6G8R1 Q6G8R1_STAAS 1 186 DBREF 4AI5 B 1 186 UNP Q6G8R1 Q6G8R1_STAAS 1 186 DBREF 4AI5 C 1 186 UNP Q6G8R1 Q6G8R1_STAAS 1 186 DBREF 4AI5 D 1 186 UNP Q6G8R1 Q6G8R1_STAAS 1 186 DBREF 4AI5 E 1 186 UNP Q6G8R1 Q6G8R1_STAAS 1 186 SEQADV 4AI5 GLY A -1 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 ALA A 0 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 PHE A 16 UNP Q6G8R1 TYR 16 ENGINEERED MUTATION SEQADV 4AI5 GLY B -1 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 ALA B 0 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 PHE B 16 UNP Q6G8R1 TYR 16 ENGINEERED MUTATION SEQADV 4AI5 GLY C -1 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 ALA C 0 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 PHE C 16 UNP Q6G8R1 TYR 16 ENGINEERED MUTATION SEQADV 4AI5 GLY D -1 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 ALA D 0 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 PHE D 16 UNP Q6G8R1 TYR 16 ENGINEERED MUTATION SEQADV 4AI5 GLY E -1 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 ALA E 0 UNP Q6G8R1 EXPRESSION TAG SEQADV 4AI5 PHE E 16 UNP Q6G8R1 TYR 16 ENGINEERED MUTATION SEQRES 1 A 188 GLY ALA MET ASN GLU CYS ALA PHE GLY THR LYS ASP PRO SEQRES 2 A 188 VAL TYR LEU ASN PHE HIS ASP HIS VAL TRP GLY GLN PRO SEQRES 3 A 188 LEU TYR ASP SER LYS ALA LEU PHE LYS LEU LEU ALA LEU SEQRES 4 A 188 GLU SER GLN HIS ALA GLY LEU SER TRP LEU THR ILE LEU SEQRES 5 A 188 LYS LYS LYS GLU ALA TYR GLU GLU ALA PHE TYR ASP PHE SEQRES 6 A 188 GLU PRO GLU LYS VAL ALA GLN MET THR ALA GLN ASP ILE SEQRES 7 A 188 ASP ARG LEU MET THR PHE PRO ASN ILE VAL HIS HIS ARG SEQRES 8 A 188 LYS LYS LEU GLU ALA ILE VAL ASN GLN ALA GLN GLY TYR SEQRES 9 A 188 LEU LYS ILE GLU GLN ALA TYR GLY SER PHE SER LYS PHE SEQRES 10 A 188 LEU TRP SER TYR VAL ASN GLY LYS PRO LYS ASP LEU GLN SEQRES 11 A 188 TYR GLU HIS ALA SER ASP ARG ILE THR VAL ASP ASP THR SEQRES 12 A 188 ALA THR GLN LEU SER LYS ASP LEU LYS GLN TYR GLY PHE SEQRES 13 A 188 LYS PHE LEU GLY PRO VAL THR VAL PHE SER PHE LEU GLU SEQRES 14 A 188 ALA ALA GLY LEU TYR ASP ALA HIS LEU LYS ASP CYS PRO SEQRES 15 A 188 SER LYS PRO LYS HIS ASN SEQRES 1 B 188 GLY ALA MET ASN GLU CYS ALA PHE GLY THR LYS ASP PRO SEQRES 2 B 188 VAL TYR LEU ASN PHE HIS ASP HIS VAL TRP GLY GLN PRO SEQRES 3 B 188 LEU TYR ASP SER LYS ALA LEU PHE LYS LEU LEU ALA LEU SEQRES 4 B 188 GLU SER GLN HIS ALA GLY LEU SER TRP LEU THR ILE LEU SEQRES 5 B 188 LYS LYS LYS GLU ALA TYR GLU GLU ALA PHE TYR ASP PHE SEQRES 6 B 188 GLU PRO GLU LYS VAL ALA GLN MET THR ALA GLN ASP ILE SEQRES 7 B 188 ASP ARG LEU MET THR PHE PRO ASN ILE VAL HIS HIS ARG SEQRES 8 B 188 LYS LYS LEU GLU ALA ILE VAL ASN GLN ALA GLN GLY TYR SEQRES 9 B 188 LEU LYS ILE GLU GLN ALA TYR GLY SER PHE SER LYS PHE SEQRES 10 B 188 LEU TRP SER TYR VAL ASN GLY LYS PRO LYS ASP LEU GLN SEQRES 11 B 188 TYR GLU HIS ALA SER ASP ARG ILE THR VAL ASP ASP THR SEQRES 12 B 188 ALA THR GLN LEU SER LYS ASP LEU LYS GLN TYR GLY PHE SEQRES 13 B 188 LYS PHE LEU GLY PRO VAL THR VAL PHE SER PHE LEU GLU SEQRES 14 B 188 ALA ALA GLY LEU TYR ASP ALA HIS LEU LYS ASP CYS PRO SEQRES 15 B 188 SER LYS PRO LYS HIS ASN SEQRES 1 C 188 GLY ALA MET ASN GLU CYS ALA PHE GLY THR LYS ASP PRO SEQRES 2 C 188 VAL TYR LEU ASN PHE HIS ASP HIS VAL TRP GLY GLN PRO SEQRES 3 C 188 LEU TYR ASP SER LYS ALA LEU PHE LYS LEU LEU ALA LEU SEQRES 4 C 188 GLU SER GLN HIS ALA GLY LEU SER TRP LEU THR ILE LEU SEQRES 5 C 188 LYS LYS LYS GLU ALA TYR GLU GLU ALA PHE TYR ASP PHE SEQRES 6 C 188 GLU PRO GLU LYS VAL ALA GLN MET THR ALA GLN ASP ILE SEQRES 7 C 188 ASP ARG LEU MET THR PHE PRO ASN ILE VAL HIS HIS ARG SEQRES 8 C 188 LYS LYS LEU GLU ALA ILE VAL ASN GLN ALA GLN GLY TYR SEQRES 9 C 188 LEU LYS ILE GLU GLN ALA TYR GLY SER PHE SER LYS PHE SEQRES 10 C 188 LEU TRP SER TYR VAL ASN GLY LYS PRO LYS ASP LEU GLN SEQRES 11 C 188 TYR GLU HIS ALA SER ASP ARG ILE THR VAL ASP ASP THR SEQRES 12 C 188 ALA THR GLN LEU SER LYS ASP LEU LYS GLN TYR GLY PHE SEQRES 13 C 188 LYS PHE LEU GLY PRO VAL THR VAL PHE SER PHE LEU GLU SEQRES 14 C 188 ALA ALA GLY LEU TYR ASP ALA HIS LEU LYS ASP CYS PRO SEQRES 15 C 188 SER LYS PRO LYS HIS ASN SEQRES 1 D 188 GLY ALA MET ASN GLU CYS ALA PHE GLY THR LYS ASP PRO SEQRES 2 D 188 VAL TYR LEU ASN PHE HIS ASP HIS VAL TRP GLY GLN PRO SEQRES 3 D 188 LEU TYR ASP SER LYS ALA LEU PHE LYS LEU LEU ALA LEU SEQRES 4 D 188 GLU SER GLN HIS ALA GLY LEU SER TRP LEU THR ILE LEU SEQRES 5 D 188 LYS LYS LYS GLU ALA TYR GLU GLU ALA PHE TYR ASP PHE SEQRES 6 D 188 GLU PRO GLU LYS VAL ALA GLN MET THR ALA GLN ASP ILE SEQRES 7 D 188 ASP ARG LEU MET THR PHE PRO ASN ILE VAL HIS HIS ARG SEQRES 8 D 188 LYS LYS LEU GLU ALA ILE VAL ASN GLN ALA GLN GLY TYR SEQRES 9 D 188 LEU LYS ILE GLU GLN ALA TYR GLY SER PHE SER LYS PHE SEQRES 10 D 188 LEU TRP SER TYR VAL ASN GLY LYS PRO LYS ASP LEU GLN SEQRES 11 D 188 TYR GLU HIS ALA SER ASP ARG ILE THR VAL ASP ASP THR SEQRES 12 D 188 ALA THR GLN LEU SER LYS ASP LEU LYS GLN TYR GLY PHE SEQRES 13 D 188 LYS PHE LEU GLY PRO VAL THR VAL PHE SER PHE LEU GLU SEQRES 14 D 188 ALA ALA GLY LEU TYR ASP ALA HIS LEU LYS ASP CYS PRO SEQRES 15 D 188 SER LYS PRO LYS HIS ASN SEQRES 1 E 188 GLY ALA MET ASN GLU CYS ALA PHE GLY THR LYS ASP PRO SEQRES 2 E 188 VAL TYR LEU ASN PHE HIS ASP HIS VAL TRP GLY GLN PRO SEQRES 3 E 188 LEU TYR ASP SER LYS ALA LEU PHE LYS LEU LEU ALA LEU SEQRES 4 E 188 GLU SER GLN HIS ALA GLY LEU SER TRP LEU THR ILE LEU SEQRES 5 E 188 LYS LYS LYS GLU ALA TYR GLU GLU ALA PHE TYR ASP PHE SEQRES 6 E 188 GLU PRO GLU LYS VAL ALA GLN MET THR ALA GLN ASP ILE SEQRES 7 E 188 ASP ARG LEU MET THR PHE PRO ASN ILE VAL HIS HIS ARG SEQRES 8 E 188 LYS LYS LEU GLU ALA ILE VAL ASN GLN ALA GLN GLY TYR SEQRES 9 E 188 LEU LYS ILE GLU GLN ALA TYR GLY SER PHE SER LYS PHE SEQRES 10 E 188 LEU TRP SER TYR VAL ASN GLY LYS PRO LYS ASP LEU GLN SEQRES 11 E 188 TYR GLU HIS ALA SER ASP ARG ILE THR VAL ASP ASP THR SEQRES 12 E 188 ALA THR GLN LEU SER LYS ASP LEU LYS GLN TYR GLY PHE SEQRES 13 E 188 LYS PHE LEU GLY PRO VAL THR VAL PHE SER PHE LEU GLU SEQRES 14 E 188 ALA ALA GLY LEU TYR ASP ALA HIS LEU LYS ASP CYS PRO SEQRES 15 E 188 SER LYS PRO LYS HIS ASN HET ZN A 200 1 HET ADK A 400 11 HET SO4 A1187 5 HET ZN B 200 1 HET ADK B 400 11 HET SO4 B1187 5 HET ZN C 200 1 HET ADK C 400 11 HET SO4 C1187 5 HET ZN D 200 1 HET ADK D 400 11 HET ZN E 200 1 HET ADK E 400 11 HET SO4 E1187 5 HETNAM ZN ZINC ION HETNAM ADK 3-METHYL-3H-PURIN-6-YLAMINE HETNAM SO4 SULFATE ION HETSYN ADK 3-METHYLADENINE FORMUL 6 ZN 5(ZN 2+) FORMUL 7 ADK 5(C6 H7 N5) FORMUL 8 SO4 4(O4 S 2-) FORMUL 20 HOH *486(H2 O) HELIX 1 1 GLY A -1 ALA A 5 1 7 HELIX 2 2 ASP A 10 VAL A 20 1 11 HELIX 3 3 ASP A 27 GLN A 40 1 14 HELIX 4 4 SER A 45 LYS A 52 1 8 HELIX 5 5 LYS A 52 PHE A 60 1 9 HELIX 6 6 TYR A 61 PHE A 63 5 3 HELIX 7 7 GLU A 64 GLN A 70 1 7 HELIX 8 8 THR A 72 MET A 80 1 9 HELIX 9 9 HIS A 88 GLY A 110 1 23 HELIX 10 10 SER A 111 SER A 118 1 8 HELIX 11 11 TYR A 119 ASN A 121 5 3 HELIX 12 12 HIS A 131 ARG A 135 5 5 HELIX 13 13 ASP A 139 TYR A 152 1 14 HELIX 14 14 GLY A 158 ALA A 169 1 12 HELIX 15 15 ASP B 10 VAL B 20 1 11 HELIX 16 16 ASP B 27 SER B 39 1 13 HELIX 17 17 SER B 45 LYS B 51 1 7 HELIX 18 18 LYS B 52 PHE B 60 1 9 HELIX 19 19 TYR B 61 PHE B 63 5 3 HELIX 20 20 GLU B 64 GLN B 70 1 7 HELIX 21 21 THR B 72 MET B 80 1 9 HELIX 22 22 HIS B 88 GLY B 110 1 23 HELIX 23 23 SER B 111 TYR B 119 1 9 HELIX 24 24 HIS B 131 ARG B 135 5 5 HELIX 25 25 ASP B 139 TYR B 152 1 14 HELIX 26 26 GLY B 158 ALA B 169 1 12 HELIX 27 27 ASP C 10 VAL C 20 1 11 HELIX 28 28 ASP C 27 SER C 39 1 13 HELIX 29 29 SER C 45 LYS C 52 1 8 HELIX 30 30 LYS C 52 PHE C 60 1 9 HELIX 31 31 TYR C 61 PHE C 63 5 3 HELIX 32 32 GLU C 64 GLN C 70 1 7 HELIX 33 33 THR C 72 MET C 80 1 9 HELIX 34 34 HIS C 88 GLY C 110 1 23 HELIX 35 35 SER C 111 TYR C 119 1 9 HELIX 36 36 HIS C 131 ARG C 135 5 5 HELIX 37 37 ASP C 139 TYR C 152 1 14 HELIX 38 38 GLY C 158 ALA C 169 1 12 HELIX 39 39 GLY D -1 ALA D 5 1 7 HELIX 40 40 ASP D 10 VAL D 20 1 11 HELIX 41 41 ASP D 27 SER D 39 1 13 HELIX 42 42 SER D 45 LYS D 52 1 8 HELIX 43 43 LYS D 52 PHE D 60 1 9 HELIX 44 44 TYR D 61 PHE D 63 5 3 HELIX 45 45 GLU D 64 GLN D 70 1 7 HELIX 46 46 THR D 72 MET D 80 1 9 HELIX 47 47 HIS D 88 GLY D 110 1 23 HELIX 48 48 SER D 111 TYR D 119 1 9 HELIX 49 49 HIS D 131 ARG D 135 5 5 HELIX 50 50 ASP D 139 TYR D 152 1 14 HELIX 51 51 GLY D 158 ALA D 169 1 12 HELIX 52 52 GLY E -1 ALA E 5 1 7 HELIX 53 53 ASP E 10 VAL E 20 1 11 HELIX 54 54 ASP E 27 GLN E 40 1 14 HELIX 55 55 SER E 45 LYS E 51 1 7 HELIX 56 56 LYS E 52 PHE E 60 1 9 HELIX 57 57 TYR E 61 PHE E 63 5 3 HELIX 58 58 GLU E 64 GLN E 70 1 7 HELIX 59 59 THR E 72 MET E 80 1 9 HELIX 60 60 HIS E 88 GLY E 110 1 23 HELIX 61 61 SER E 111 TYR E 119 1 9 HELIX 62 62 HIS E 131 ARG E 135 5 5 HELIX 63 63 ASP E 139 TYR E 152 1 14 HELIX 64 64 GLY E 158 ALA E 169 1 12 SHEET 1 AA 2 LYS A 125 ASP A 126 0 SHEET 2 AA 2 TYR A 172 ASP A 173 1 N ASP A 173 O LYS A 125 SHEET 1 BA 2 LYS B 125 ASP B 126 0 SHEET 2 BA 2 TYR B 172 ASP B 173 1 N ASP B 173 O LYS B 125 SHEET 1 CA 2 LYS C 125 ASP C 126 0 SHEET 2 CA 2 TYR C 172 ASP C 173 1 N ASP C 173 O LYS C 125 SHEET 1 DA 2 LYS D 125 ASP D 126 0 SHEET 2 DA 2 TYR D 172 ASP D 173 1 N ASP D 173 O LYS D 125 SHEET 1 EA 2 LYS E 125 ASP E 126 0 SHEET 2 EA 2 TYR E 172 ASP E 173 1 N ASP E 173 O LYS E 125 LINK SG CYS A 4 ZN ZN A 200 1555 1555 2.26 LINK NE2 HIS A 17 ZN ZN A 200 1555 1555 2.02 LINK ND1 HIS A 175 ZN ZN A 200 1555 1555 2.08 LINK SG CYS A 179 ZN ZN A 200 1555 1555 2.27 LINK SG CYS B 4 ZN ZN B 200 1555 1555 2.28 LINK NE2 HIS B 17 ZN ZN B 200 1555 1555 2.12 LINK ND1 HIS B 175 ZN ZN B 200 1555 1555 2.05 LINK SG CYS B 179 ZN ZN B 200 1555 1555 2.32 LINK SG CYS C 4 ZN ZN C 200 1555 1555 2.27 LINK NE2 HIS C 17 ZN ZN C 200 1555 1555 2.09 LINK ND1 HIS C 175 ZN ZN C 200 1555 1555 2.08 LINK SG CYS C 179 ZN ZN C 200 1555 1555 2.29 LINK SG CYS D 4 ZN ZN D 200 1555 1555 2.26 LINK NE2 HIS D 17 ZN ZN D 200 1555 1555 2.05 LINK ND1 HIS D 175 ZN ZN D 200 1555 1555 2.16 LINK SG CYS D 179 ZN ZN D 200 1555 1555 2.30 LINK SG CYS E 4 ZN ZN E 200 1555 1555 2.28 LINK NE2 HIS E 17 ZN ZN E 200 1555 1555 1.98 LINK ND1 HIS E 175 ZN ZN E 200 1555 1555 2.02 LINK SG CYS E 179 ZN ZN E 200 1555 1555 2.30 SITE 1 AC1 4 CYS A 4 HIS A 17 HIS A 175 CYS A 179 SITE 1 AC2 9 PHE A 6 TYR A 13 PHE A 16 TRP A 21 SITE 2 AC2 9 GLU A 38 HIS A 41 TRP A 46 ALA A 168 SITE 3 AC2 9 HOH A2144 SITE 1 AC3 4 CYS B 4 HIS B 17 HIS B 175 CYS B 179 SITE 1 AC4 9 PHE B 6 TYR B 13 PHE B 16 TRP B 21 SITE 2 AC4 9 GLU B 38 HIS B 41 TRP B 46 ALA B 168 SITE 3 AC4 9 HOH B2119 SITE 1 AC5 4 CYS C 4 HIS C 17 HIS C 175 CYS C 179 SITE 1 AC6 8 PHE C 6 TYR C 13 PHE C 16 TRP C 21 SITE 2 AC6 8 GLU C 38 HIS C 41 TRP C 46 ALA C 168 SITE 1 AC7 4 CYS D 4 HIS D 17 HIS D 175 CYS D 179 SITE 1 AC8 8 PHE D 6 TYR D 13 PHE D 16 TRP D 21 SITE 2 AC8 8 GLU D 38 HIS D 41 TRP D 46 ALA D 168 SITE 1 AC9 4 CYS E 4 HIS E 17 HIS E 175 CYS E 179 SITE 1 BC1 9 PHE E 6 TYR E 13 PHE E 16 TRP E 21 SITE 2 BC1 9 GLU E 38 HIS E 41 TRP E 46 ALA E 168 SITE 3 BC1 9 HOH E2053 SITE 1 BC2 8 GLY B 158 PRO B 159 VAL B 160 THR B 161 SITE 2 BC2 8 HOH B2112 HOH B2120 HOH B2121 VAL D 160 SITE 1 BC3 6 GLY A 158 PRO A 159 VAL A 160 THR A 161 SITE 2 BC3 6 HOH A2143 HOH A2150 SITE 1 BC4 8 GLY C 158 PRO C 159 VAL C 160 THR C 161 SITE 2 BC4 8 HOH C2088 HOH C2089 VAL E 160 SO4 E1187 SITE 1 BC5 6 VAL C 160 SO4 C1187 GLY E 158 PRO E 159 SITE 2 BC5 6 VAL E 160 THR E 161 CRYST1 72.263 78.813 179.298 90.00 90.53 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013838 0.000000 0.000128 0.00000 SCALE2 0.000000 0.012688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005578 0.00000