HEADER GTP-BINDING PROTEIN 10-FEB-12 4AII TITLE CRYSTAL STRUCTURE OF THE RAT REM2 GTPASE - G DOMAIN BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN REM 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G DOMAIN, RESIDUES 113-283; COMPND 5 SYNONYM: RAD AND GEM-LIKE GTP-BINDING PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS GTP-BINDING PROTEIN, RGK PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR P.REYMOND,A.COQUARD,M.CHENON,M.ZEGHOUF,A.EL MARJOU,A.THOMPSON, AUTHOR 2 J.MENETREY REVDAT 3 20-DEC-23 4AII 1 REMARK LINK REVDAT 2 20-JUN-12 4AII 1 JRNL REVDAT 1 13-JUN-12 4AII 0 JRNL AUTH P.REYMOND,A.COQUARD,M.CHENON,M.ZEGHOUF,A.EL MARJOU, JRNL AUTH 2 A.THOMPSON,J.MENETREY JRNL TITL STRUCTURE OF THE GDP-BOUND G DOMAIN OF THE RGK PROTEIN REM2. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 626 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22684057 JRNL DOI 10.1107/S1744309112013541 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 9160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : -5.06000 REMARK 3 B33 (A**2) : 6.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.941 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.439 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2298 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3115 ; 1.633 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;34.758 ;21.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;17.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1682 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1431 ; 0.575 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2277 ; 1.116 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 867 ; 1.957 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 836 ; 3.275 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 113 A 136 3 REMARK 3 1 B 113 B 136 3 REMARK 3 2 A 150 A 172 3 REMARK 3 2 B 150 B 172 3 REMARK 3 3 A 190 A 282 3 REMARK 3 3 B 190 B 282 3 REMARK 3 4 A 301 A 306 1 REMARK 3 4 B 301 B 306 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 582 ; 0.03 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 582 ; 0.03 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 489 ; 0.04 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 489 ; 0.04 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 582 ; 0.32 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 582 ; 0.32 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 489 ; 0.65 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 489 ; 0.65 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 138-149 AND 171-182 ARE DISORDERED REMARK 4 REMARK 4 4AII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 41.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CBQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5 % PEG 4000, 10% ISOPROPANOL, 100 REMARK 280 MM HEPES SODIUM SALT PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.68700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 GLY A 137 REMARK 465 LEU A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 ASP A 141 REMARK 465 ASN A 142 REMARK 465 ALA A 143 REMARK 465 HIS A 144 REMARK 465 GLU A 145 REMARK 465 MET A 146 REMARK 465 GLU A 147 REMARK 465 ASN A 148 REMARK 465 SER A 149 REMARK 465 GLU A 150 REMARK 465 ILE A 171 REMARK 465 TRP A 172 REMARK 465 GLU A 173 REMARK 465 GLN A 174 REMARK 465 GLY A 175 REMARK 465 ASP A 176 REMARK 465 ALA A 177 REMARK 465 GLY A 178 REMARK 465 GLY A 179 REMARK 465 TRP A 180 REMARK 465 LEU A 181 REMARK 465 GLN A 182 REMARK 465 GLY A 283 REMARK 465 MET B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 GLY B 111 REMARK 465 GLY B 112 REMARK 465 LEU B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 ASP B 141 REMARK 465 ASN B 142 REMARK 465 ALA B 143 REMARK 465 HIS B 144 REMARK 465 GLU B 145 REMARK 465 MET B 146 REMARK 465 GLU B 147 REMARK 465 ASN B 148 REMARK 465 SER B 149 REMARK 465 ILE B 171 REMARK 465 TRP B 172 REMARK 465 GLU B 173 REMARK 465 GLN B 174 REMARK 465 GLY B 175 REMARK 465 ASP B 176 REMARK 465 ALA B 177 REMARK 465 GLY B 178 REMARK 465 GLY B 179 REMARK 465 TRP B 180 REMARK 465 LEU B 181 REMARK 465 GLN B 182 REMARK 465 GLY B 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 206 CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LEU A 212 CG CD1 CD2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 113 CB CG OD1 OD2 REMARK 470 ARG B 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 GLN B 187 CG CD OE1 NE2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 LEU B 212 CG CD1 CD2 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 121 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 232 -9.04 -57.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 276 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1283 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 129 OG REMARK 620 2 GDP A1284 O1B 79.9 REMARK 620 3 HOH A2001 O 86.0 86.0 REMARK 620 4 HOH A2002 O 90.4 99.6 172.8 REMARK 620 5 HOH A2003 O 96.2 173.0 88.0 86.2 REMARK 620 6 HOH A2006 O 171.6 91.7 94.6 89.8 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1283 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 129 OG REMARK 620 2 GDP B1284 O1B 97.8 REMARK 620 3 HOH B2002 O 86.6 100.2 REMARK 620 4 HOH B2003 O 89.9 170.6 85.5 REMARK 620 5 HOH B2004 O 88.5 87.0 171.8 87.9 REMARK 620 6 HOH B2006 O 170.5 79.6 84.8 93.6 100.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1284 DBREF 4AII A 113 283 UNP Q9WTY2 REM2_RAT 113 283 DBREF 4AII B 113 283 UNP Q9WTY2 REM2_RAT 113 283 SEQADV 4AII MET A 104 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 105 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 106 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 107 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 108 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 109 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS A 110 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII GLY A 111 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII GLY A 112 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII MET B 104 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 105 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 106 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 107 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 108 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 109 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII HIS B 110 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII GLY B 111 UNP Q9WTY2 EXPRESSION TAG SEQADV 4AII GLY B 112 UNP Q9WTY2 EXPRESSION TAG SEQRES 1 A 180 MET HIS HIS HIS HIS HIS HIS GLY GLY ASP GLY VAL PHE SEQRES 2 A 180 LYS VAL MET LEU LEU GLY GLU SER GLY VAL GLY LYS SER SEQRES 3 A 180 THR LEU ALA GLY THR PHE GLY GLY LEU GLN GLY ASP ASN SEQRES 4 A 180 ALA HIS GLU MET GLU ASN SER GLU ASP THR TYR GLU ARG SEQRES 5 A 180 ARG ILE MET VAL ASP LYS GLU GLU VAL THR LEU ILE VAL SEQRES 6 A 180 TYR ASP ILE TRP GLU GLN GLY ASP ALA GLY GLY TRP LEU SEQRES 7 A 180 GLN ASP HIS CYS LEU GLN THR GLY ASP ALA PHE LEU ILE SEQRES 8 A 180 VAL PHE SER VAL THR ASP ARG ARG SER PHE SER LYS VAL SEQRES 9 A 180 PRO GLU THR LEU LEU ARG LEU ARG ALA GLY ARG PRO HIS SEQRES 10 A 180 HIS ASP LEU PRO VAL ILE LEU VAL GLY ASN LYS SER ASP SEQRES 11 A 180 LEU ALA ARG SER ARG GLU VAL SER LEU GLU GLU GLY ARG SEQRES 12 A 180 HIS LEU ALA GLY THR LEU SER CYS LYS HIS ILE GLU THR SEQRES 13 A 180 SER ALA ALA LEU HIS HIS ASN THR ARG GLU LEU PHE GLU SEQRES 14 A 180 GLY ALA VAL ARG GLN ILE ARG LEU ARG ARG GLY SEQRES 1 B 180 MET HIS HIS HIS HIS HIS HIS GLY GLY ASP GLY VAL PHE SEQRES 2 B 180 LYS VAL MET LEU LEU GLY GLU SER GLY VAL GLY LYS SER SEQRES 3 B 180 THR LEU ALA GLY THR PHE GLY GLY LEU GLN GLY ASP ASN SEQRES 4 B 180 ALA HIS GLU MET GLU ASN SER GLU ASP THR TYR GLU ARG SEQRES 5 B 180 ARG ILE MET VAL ASP LYS GLU GLU VAL THR LEU ILE VAL SEQRES 6 B 180 TYR ASP ILE TRP GLU GLN GLY ASP ALA GLY GLY TRP LEU SEQRES 7 B 180 GLN ASP HIS CYS LEU GLN THR GLY ASP ALA PHE LEU ILE SEQRES 8 B 180 VAL PHE SER VAL THR ASP ARG ARG SER PHE SER LYS VAL SEQRES 9 B 180 PRO GLU THR LEU LEU ARG LEU ARG ALA GLY ARG PRO HIS SEQRES 10 B 180 HIS ASP LEU PRO VAL ILE LEU VAL GLY ASN LYS SER ASP SEQRES 11 B 180 LEU ALA ARG SER ARG GLU VAL SER LEU GLU GLU GLY ARG SEQRES 12 B 180 HIS LEU ALA GLY THR LEU SER CYS LYS HIS ILE GLU THR SEQRES 13 B 180 SER ALA ALA LEU HIS HIS ASN THR ARG GLU LEU PHE GLU SEQRES 14 B 180 GLY ALA VAL ARG GLN ILE ARG LEU ARG ARG GLY HET MG A1283 1 HET GDP A1284 28 HET MG B1283 1 HET GDP B1284 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *12(H2 O) HELIX 1 1 GLY A 127 GLY A 136 1 10 HELIX 2 2 ASP A 183 GLY A 189 1 7 HELIX 3 3 ASP A 200 LYS A 206 1 7 HELIX 4 4 LYS A 206 ARG A 218 1 13 HELIX 5 5 LEU A 234 ARG A 238 5 5 HELIX 6 6 SER A 241 LEU A 252 1 12 HELIX 7 7 ASN A 266 ARG A 281 1 16 HELIX 8 8 GLY B 127 GLY B 137 1 11 HELIX 9 9 ASP B 183 GLY B 189 1 7 HELIX 10 10 ASP B 200 LYS B 206 1 7 HELIX 11 11 LYS B 206 ALA B 216 1 11 HELIX 12 12 LEU B 234 ARG B 238 5 5 HELIX 13 13 SER B 241 LEU B 252 1 12 HELIX 14 14 ASN B 266 ARG B 281 1 16 SHEET 1 AA 6 THR A 152 VAL A 159 0 SHEET 2 AA 6 GLU A 162 TYR A 169 -1 O GLU A 162 N VAL A 159 SHEET 3 AA 6 VAL A 115 LEU A 121 1 O PHE A 116 N ILE A 167 SHEET 4 AA 6 ALA A 191 SER A 197 1 O ALA A 191 N MET A 119 SHEET 5 AA 6 VAL A 225 ASN A 230 1 O ILE A 226 N ILE A 194 SHEET 6 AA 6 LYS A 255 GLU A 258 1 O LYS A 255 N LEU A 227 SHEET 1 BA 6 THR B 152 VAL B 159 0 SHEET 2 BA 6 GLU B 162 TYR B 169 -1 O GLU B 162 N VAL B 159 SHEET 3 BA 6 VAL B 115 LEU B 121 1 O PHE B 116 N ILE B 167 SHEET 4 BA 6 ALA B 191 SER B 197 1 O ALA B 191 N MET B 119 SHEET 5 BA 6 VAL B 225 ASN B 230 1 O ILE B 226 N ILE B 194 SHEET 6 BA 6 LYS B 255 GLU B 258 1 O LYS B 255 N LEU B 227 LINK OG SER A 129 MG MG A1283 1555 1555 2.26 LINK MG MG A1283 O1B GDP A1284 1555 1555 1.87 LINK MG MG A1283 O HOH A2001 1555 1555 2.20 LINK MG MG A1283 O HOH A2002 1555 1555 2.16 LINK MG MG A1283 O HOH A2003 1555 1555 2.24 LINK MG MG A1283 O HOH A2006 1555 1555 2.15 LINK OG SER B 129 MG MG B1283 1555 1555 2.15 LINK MG MG B1283 O1B GDP B1284 1555 1555 1.97 LINK MG MG B1283 O HOH B2002 1555 1555 2.15 LINK MG MG B1283 O HOH B2003 1555 1555 2.27 LINK MG MG B1283 O HOH B2004 1555 1555 2.17 LINK MG MG B1283 O HOH B2006 1555 1555 2.13 SITE 1 AC1 6 SER A 129 GDP A1284 HOH A2001 HOH A2002 SITE 2 AC1 6 HOH A2003 HOH A2006 SITE 1 AC2 6 SER B 129 GDP B1284 HOH B2002 HOH B2003 SITE 2 AC2 6 HOH B2004 HOH B2006 SITE 1 AC3 17 SER A 124 GLY A 125 GLY A 127 LYS A 128 SITE 2 AC3 17 SER A 129 THR A 130 ASN A 230 LYS A 231 SITE 3 AC3 17 ASP A 233 LEU A 234 SER A 260 ALA A 261 SITE 4 AC3 17 ALA A 262 MG A1283 HOH A2001 HOH A2002 SITE 5 AC3 17 HOH A2006 SITE 1 AC4 17 SER B 124 GLY B 125 VAL B 126 GLY B 127 SITE 2 AC4 17 LYS B 128 SER B 129 THR B 130 ASN B 230 SITE 3 AC4 17 LYS B 231 ASP B 233 LEU B 234 SER B 260 SITE 4 AC4 17 ALA B 261 ALA B 262 MG B1283 HOH B2004 SITE 5 AC4 17 HOH B2006 CRYST1 50.916 59.374 57.297 90.00 101.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019640 0.000000 0.003999 0.00000 SCALE2 0.000000 0.016842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017811 0.00000